RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 DACT2Q5SW24 774 aa16.65■□□□□ 0.26
VPS33A-209ENST00000544349 HHIPL2Q6UWX4 724 aa16.65■□□□□ 0.26
VPS33A-209ENST00000544349 MTFR1LQ9H019 292 aa16.65■□□□□ 0.26
VPS33A-209ENST00000544349 TFIP11Q9UBB9 837 aaKnown RBP16.65■□□□□ 0.26
VPS33A-209ENST00000544349 ATF5Q9Y2D1 282 aaPredicted RBP16.65■□□□□ 0.26
VPS33A-209ENST00000544349 MYH1P12882 1939 aa16.65■□□□□ 0.26
VPS33A-209ENST00000544349 USP17L3A6NCW0 530 aa16.64■□□□□ 0.25
VPS33A-209ENST00000544349 USP17L4A6NCW7 530 aa16.64■□□□□ 0.25
VPS33A-209ENST00000544349 LETM1O95202 739 aaPredicted RBP16.64■□□□□ 0.25
VPS33A-209ENST00000544349 SCNN1DP51172 638 aa16.64■□□□□ 0.25
VPS33A-209ENST00000544349 PLCD1P51178 756 aa16.64■□□□□ 0.25
VPS33A-209ENST00000544349 USP17L1Q7RTZ2 530 aa16.64■□□□□ 0.25
VPS33A-209ENST00000544349 RTKN2Q8IZC4 609 aa16.64■□□□□ 0.25
VPS33A-209ENST00000544349 ZNF654Q8IZM8 581 aa16.64■□□□□ 0.25
VPS33A-209ENST00000544349 DYNLL2Q96FJ2 89 aa16.64■□□□□ 0.25
VPS33A-209ENST00000544349 ZSCAN16Q9H4T2 348 aaPredicted RBP16.64■□□□□ 0.25
VPS33A-209ENST00000544349 SAP30BPQ9UHR5 308 aaKnown RBP16.64■□□□□ 0.25
VPS33A-209ENST00000544349 PPIP5K2O43314 1243 aa16.64■□□□□ 0.25
VPS33A-209ENST00000544349 ZNF500O60304 480 aaPredicted RBP16.64■□□□□ 0.25
VPS33A-209ENST00000544349 POLD1P28340 1107 aa16.64■□□□□ 0.25
VPS33A-209ENST00000544349 FOSBP53539 338 aa16.64■□□□□ 0.25
VPS33A-209ENST00000544349 TGFB2P61812 414 aa16.64■□□□□ 0.25
VPS33A-209ENST00000544349 FAM47AQ5JRC9 791 aa16.64■□□□□ 0.25
VPS33A-209ENST00000544349 IFIT1BQ5T764 474 aaKnown RBP16.64■□□□□ 0.25
VPS33A-209ENST00000544349 TEKT1Q969V4 418 aa16.64■□□□□ 0.25
VPS33A-209ENST00000544349 PSMD1Q99460 953 aa16.64■□□□□ 0.25
VPS33A-209ENST00000544349 OFD1O75665 1012 aa16.63■□□□□ 0.25
VPS33A-209ENST00000544349 LEO1Q8WVC0 666 aaPredicted RBP16.63■□□□□ 0.25
VPS33A-209ENST00000544349 MRIQ9BWK5 157 aa16.63■□□□□ 0.25
VPS33A-209ENST00000544349 ADAMTSL1Q8N6G6 1762 aa16.63■□□□□ 0.25
VPS33A-209ENST00000544349 TSPY2A6NKD2 308 aa16.63■□□□□ 0.25
VPS33A-209ENST00000544349 AP5Z1O43299 807 aa16.63■□□□□ 0.25
VPS33A-209ENST00000544349 RTN1Q16799 776 aa16.63■□□□□ 0.25
VPS33A-209ENST00000544349 UVSSAQ2YD98 709 aa16.63■□□□□ 0.25
VPS33A-209ENST00000544349 SPATA32Q96LK8 384 aa16.63■□□□□ 0.25
VPS33A-209ENST00000544349 CRKP46108 304 aa16.62■□□□□ 0.25
VPS33A-209ENST00000544349 APOBEC3HQ6NTF7 200 aaKnown RBP16.62■□□□□ 0.25
VPS33A-209ENST00000544349 FANCBQ8NB91 859 aa16.62■□□□□ 0.25
VPS33A-209ENST00000544349 PHKBQ93100 1093 aa16.62■□□□□ 0.25
VPS33A-209ENST00000544349 C8orf76Q96K31 380 aa16.62■□□□□ 0.25
VPS33A-209ENST00000544349 MKNK2Q9HBH9 465 aa16.62■□□□□ 0.25
VPS33A-209ENST00000544349 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.62■□□□□ 0.25
VPS33A-209ENST00000544349 CCDC196A0A1B0GTZ2 297 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 NMT2O60551 498 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 ADCY5O95622 1261 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 IFNAR1P17181 557 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 IARSP41252 1262 aaKnown RBP16.61■□□□□ 0.25
VPS33A-209ENST00000544349 HDLBPQ00341 1268 aaKnown RBP16.61■□□□□ 0.25
VPS33A-209ENST00000544349 TFAP4Q01664 338 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 GUCY1B3Q02153 619 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 R3HDM1Q15032 1099 aaKnown RBP16.61■□□□□ 0.25
VPS33A-209ENST00000544349 PPP2R5BQ15173 497 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 CAMK4Q16566 473 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 KIAA0825Q8IV33 1275 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 RGS22Q8NE09 1264 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 NUP133Q8WUM0 1156 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 PGBD1Q96JS3 809 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 USP40Q9NVE5 1235 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 PIM2Q9P1W9 311 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 YDJCA8MPS7 323 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 WDHD1O75717 1129 aaPredicted RBP16.61■□□□□ 0.25
VPS33A-209ENST00000544349 PTMAP06454 111 aaKnown RBP16.61■□□□□ 0.25
VPS33A-209ENST00000544349 CDC42EP5Q6NZY7 148 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 C16orf86Q6ZW13 317 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 CATIPQ7Z7H3 387 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 FBXO18Q8NFZ0 1043 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 ZDHHC15Q96MV8 337 aa16.61■□□□□ 0.25
VPS33A-209ENST00000544349 STK36Q9NRP7 1315 aa16.6■□□□□ 0.25
VPS33A-209ENST00000544349 PICALMQ13492 652 aa16.6■□□□□ 0.25
VPS33A-209ENST00000544349 ZNF444Q8N0Y2 327 aaPredicted RBP16.6■□□□□ 0.25
VPS33A-209ENST00000544349 SLC44A5Q8NCS7 719 aa16.6■□□□□ 0.25
VPS33A-209ENST00000544349 NUP62CLQ9H1M0 184 aa16.6■□□□□ 0.25
VPS33A-209ENST00000544349 ZNF287Q9HBT7 754 aa16.6■□□□□ 0.25
VPS33A-209ENST00000544349 PSME4Q14997 1843 aa16.6■□□□□ 0.25
VPS33A-209ENST00000544349 ECM29Q5VYK3 1845 aa16.6■□□□□ 0.25
VPS33A-209ENST00000544349 FMNL1O95466 1100 aaPredicted RBP16.6■□□□□ 0.25
VPS33A-209ENST00000544349 CDK8P49336 464 aa16.6■□□□□ 0.25
VPS33A-209ENST00000544349 SSRP1Q08945 709 aaKnown RBP16.6■□□□□ 0.25
VPS33A-209ENST00000544349 TROAPQ12815 778 aa16.6■□□□□ 0.25
VPS33A-209ENST00000544349 SOGA3Q5TF21 947 aa16.6■□□□□ 0.25
VPS33A-209ENST00000544349 OTUD7BQ6GQQ9 843 aa16.6■□□□□ 0.25
VPS33A-209ENST00000544349 ALG1Q9BT22 464 aa16.6■□□□□ 0.25
VPS33A-209ENST00000544349 FTOQ9C0B1 505 aaKnown RBP eCLIP16.6■□□□□ 0.25
VPS33A-209ENST00000544349 SCAND2PQ9GZW5 306 aaPredicted RBP16.6■□□□□ 0.25
VPS33A-209ENST00000544349 DDX4Q9NQI0 724 aaKnown RBP16.6■□□□□ 0.25
VPS33A-209ENST00000544349 IL17RBQ9NRM6 502 aa16.6■□□□□ 0.25
VPS33A-209ENST00000544349 DACT1Q9NYF0 836 aa16.6■□□□□ 0.25
VPS33A-209ENST00000544349 CALM1P0DP23 149 aa16.59■□□□□ 0.25
VPS33A-209ENST00000544349 CALM2P0DP24 149 aa16.59■□□□□ 0.25
VPS33A-209ENST00000544349 CALM3P0DP25 149 aa16.59■□□□□ 0.25
VPS33A-209ENST00000544349 RASA1P20936 1047 aa16.59■□□□□ 0.25
VPS33A-209ENST00000544349 RCSD1Q6JBY9 416 aa16.59■□□□□ 0.25
VPS33A-209ENST00000544349 SLC26A6Q9BXS9 759 aa16.59■□□□□ 0.25
VPS33A-209ENST00000544349 VPS33BQ9H267 617 aa16.59■□□□□ 0.25
VPS33A-209ENST00000544349 TCP11L1Q9NUJ3 509 aa16.59■□□□□ 0.25
VPS33A-209ENST00000544349 DDAH1O94760 285 aa16.58■□□□□ 0.25
VPS33A-209ENST00000544349 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.58■□□□□ 0.25
VPS33A-209ENST00000544349 NBPF11Q86T75 865 aa16.58■□□□□ 0.25
VPS33A-209ENST00000544349 DGKHQ86XP1 1220 aa16.58■□□□□ 0.25
VPS33A-209ENST00000544349 CKAP2LQ8IYA6 745 aa16.58■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms