RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 RGMBQ6NW40 437 aa17.17■□□□□ 0.34
TNFRSF1A-216ENST00000543995 MFSD6Q6ZSS7 791 aa17.17■□□□□ 0.34
TNFRSF1A-216ENST00000543995 RNF41Q9H4P4 317 aaPredicted RBP17.17■□□□□ 0.34
TNFRSF1A-216ENST00000543995 CABP5Q9NP86 173 aa17.17■□□□□ 0.34
TNFRSF1A-216ENST00000543995 INCENPQ9NQS7 918 aa17.17■□□□□ 0.34
TNFRSF1A-216ENST00000543995 SNCAIPQ9Y6H5 919 aa17.17■□□□□ 0.34
TNFRSF1A-216ENST00000543995 CYP21A2P08686 494 aa17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 GRM1Q13255 1194 aa17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 C8orf34Q49A92 452 aa17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 RRP12Q5JTH9 1297 aaKnown RBP17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 NOL9Q5SY16 702 aaKnown RBP17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 AKNAD1Q5T1N1 836 aa17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 TBC1D10CQ8IV04 446 aa17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 STAG1Q8WVM7 1258 aa17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 NBPF3Q9H094 633 aa17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 GH2P01242 217 aa17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 ASNSP08243 561 aa17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 PCP11498 1178 aaKnown RBP17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 RASA1P20936 1047 aa17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 RNF20Q5VTR2 975 aa17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 CREB3L3Q68CJ9 461 aa17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 HHIPL1Q96JK4 782 aa17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 CCDC17Q96LX7 622 aa17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 ZBTB21Q9ULJ3 1066 aa17.16■□□□□ 0.34
TNFRSF1A-216ENST00000543995 RASSF10A6NK89 507 aa17.15■□□□□ 0.34
TNFRSF1A-216ENST00000543995 SLC27A2O14975 620 aa17.15■□□□□ 0.34
TNFRSF1A-216ENST00000543995 RANBP6O60518 1105 aaKnown RBP17.15■□□□□ 0.34
TNFRSF1A-216ENST00000543995 TSPY3P0CV98 308 aa17.15■□□□□ 0.34
TNFRSF1A-216ENST00000543995 TSPY8P0CW00 308 aa17.15■□□□□ 0.34
TNFRSF1A-216ENST00000543995 AKR1B1P15121 316 aa17.15■□□□□ 0.34
TNFRSF1A-216ENST00000543995 RAB3GAP1Q15042 981 aa17.15■□□□□ 0.34
TNFRSF1A-216ENST00000543995 NECTIN1Q15223 517 aa17.15■□□□□ 0.34
TNFRSF1A-216ENST00000543995 SHROOM1Q2M3G4 852 aaPredicted RBP17.15■□□□□ 0.34
TNFRSF1A-216ENST00000543995 OPTNQ96CV9 577 aa17.15■□□□□ 0.34
TNFRSF1A-216ENST00000543995 GINM1Q9NU53 330 aa17.15■□□□□ 0.34
TNFRSF1A-216ENST00000543995 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.15■□□□□ 0.34
TNFRSF1A-216ENST00000543995 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.15■□□□□ 0.34
TNFRSF1A-216ENST00000543995 ORC4O43929 436 aa17.14■□□□□ 0.33
TNFRSF1A-216ENST00000543995 JAG1P78504 1218 aa17.14■□□□□ 0.33
TNFRSF1A-216ENST00000543995 FAM47AQ5JRC9 791 aa17.14■□□□□ 0.33
TNFRSF1A-216ENST00000543995 CYP4F22Q6NT55 531 aa17.14■□□□□ 0.33
TNFRSF1A-216ENST00000543995 ERO1BQ86YB8 467 aa17.14■□□□□ 0.33
TNFRSF1A-216ENST00000543995 CNKSR2Q8WXI2 1034 aa17.14■□□□□ 0.33
TNFRSF1A-216ENST00000543995 CCDC102AQ96A19 550 aa17.14■□□□□ 0.33
TNFRSF1A-216ENST00000543995 OTUD5Q96G74 571 aa17.14■□□□□ 0.33
TNFRSF1A-216ENST00000543995 TACC3Q9Y6A5 838 aa17.14■□□□□ 0.33
TNFRSF1A-216ENST00000543995 ZHX2Q9Y6X8 837 aa17.14■□□□□ 0.33
TNFRSF1A-216ENST00000543995 SPDYE5A6NIY4 337 aa17.13■□□□□ 0.33
TNFRSF1A-216ENST00000543995 TSPY2A6NKD2 308 aa17.13■□□□□ 0.33
TNFRSF1A-216ENST00000543995 USP17L5A8MUK1 530 aa17.13■□□□□ 0.33
TNFRSF1A-216ENST00000543995 EPB41L2O43491 1005 aaKnown RBP17.13■□□□□ 0.33
TNFRSF1A-216ENST00000543995 FGRP09769 529 aa17.13■□□□□ 0.33
TNFRSF1A-216ENST00000543995 PTPRAP18433 802 aa17.13■□□□□ 0.33
TNFRSF1A-216ENST00000543995 MCCP23508 829 aa17.13■□□□□ 0.33
TNFRSF1A-216ENST00000543995 ECE1P42892 770 aa17.13■□□□□ 0.33
TNFRSF1A-216ENST00000543995 TFAP4Q01664 338 aa17.13■□□□□ 0.33
TNFRSF1A-216ENST00000543995 TRDNQ13061 729 aa17.13■□□□□ 0.33
TNFRSF1A-216ENST00000543995 MKRN3Q13064 507 aaKnown RBP17.13■□□□□ 0.33
TNFRSF1A-216ENST00000543995 TMEM179Q6ZVK1 233 aa17.13■□□□□ 0.33
TNFRSF1A-216ENST00000543995 CCDC84Q86UT8 332 aaPredicted RBP17.13■□□□□ 0.33
TNFRSF1A-216ENST00000543995 RASAL3Q86YV0 1011 aa17.13■□□□□ 0.33
TNFRSF1A-216ENST00000543995 AS3MTQ9HBK9 375 aa17.13■□□□□ 0.33
TNFRSF1A-216ENST00000543995 NEDD4P46934 1319 aa17.13■□□□□ 0.33
TNFRSF1A-216ENST00000543995 E7EWF7 191 aa17.12■□□□□ 0.33
TNFRSF1A-216ENST00000543995 ZKSCAN1P17029 563 aaPredicted RBP17.12■□□□□ 0.33
TNFRSF1A-216ENST00000543995 PPATQ06203 517 aa17.12■□□□□ 0.33
TNFRSF1A-216ENST00000543995 SEPT2Q15019 361 aa17.12■□□□□ 0.33
TNFRSF1A-216ENST00000543995 ESR2Q92731 530 aa17.12■□□□□ 0.33
TNFRSF1A-216ENST00000543995 WNK4Q96J92 1243 aa17.12■□□□□ 0.33
TNFRSF1A-216ENST00000543995 USP26Q9BXU7 913 aa17.12■□□□□ 0.33
TNFRSF1A-216ENST00000543995 KRT23Q9C075 422 aa17.12■□□□□ 0.33
TNFRSF1A-216ENST00000543995 CNNM2Q9H8M5 875 aa17.12■□□□□ 0.33
TNFRSF1A-216ENST00000543995 SEC24BO95487 1268 aa17.11■□□□□ 0.33
TNFRSF1A-216ENST00000543995 SLC10A3P09131 477 aa17.11■□□□□ 0.33
TNFRSF1A-216ENST00000543995 HSPA4P34932 840 aa17.11■□□□□ 0.33
TNFRSF1A-216ENST00000543995 SPRYD7Q5W111 196 aa17.11■□□□□ 0.33
TNFRSF1A-216ENST00000543995 RALYLQ86SE5 291 aaKnown RBP17.11■□□□□ 0.33
TNFRSF1A-216ENST00000543995 CAPNS2Q96L46 248 aa17.11■□□□□ 0.33
TNFRSF1A-216ENST00000543995 TAF6LQ9Y6J9 622 aa17.11■□□□□ 0.33
TNFRSF1A-216ENST00000543995 PHIPQ8WWQ0 1821 aa17.11■□□□□ 0.33
TNFRSF1A-216ENST00000543995 B4E1Z4 1266 aa17.11■□□□□ 0.33
TNFRSF1A-216ENST00000543995 KDM4AO75164 1064 aa17.11■□□□□ 0.33
TNFRSF1A-216ENST00000543995 ZBTB48P10074 688 aaPredicted RBP17.11■□□□□ 0.33
TNFRSF1A-216ENST00000543995 GUCY1A2P33402 732 aa17.11■□□□□ 0.33
TNFRSF1A-216ENST00000543995 PPIL2Q13356 520 aa17.11■□□□□ 0.33
TNFRSF1A-216ENST00000543995 NEDD1Q8NHV4 660 aa17.11■□□□□ 0.33
TNFRSF1A-216ENST00000543995 NCOA7Q8NI08 942 aa17.11■□□□□ 0.33
TNFRSF1A-216ENST00000543995 TBC1D2Q9BYX2 928 aa17.11■□□□□ 0.33
TNFRSF1A-216ENST00000543995 GREB1LQ9C091 1923 aaPredicted RBP17.1■□□□□ 0.33
TNFRSF1A-216ENST00000543995 FAM155AB1AL88 458 aaPredicted RBP17.1■□□□□ 0.33
TNFRSF1A-216ENST00000543995 IRF6O14896 467 aa17.1■□□□□ 0.33
TNFRSF1A-216ENST00000543995 GJA5P36382 358 aa17.1■□□□□ 0.33
TNFRSF1A-216ENST00000543995 ATP2B2Q01814 1243 aa17.1■□□□□ 0.33
TNFRSF1A-216ENST00000543995 ICA1Q05084 483 aa17.1■□□□□ 0.33
TNFRSF1A-216ENST00000543995 SPP2Q13103 211 aa17.1■□□□□ 0.33
TNFRSF1A-216ENST00000543995 STOX1Q6ZVD7 989 aa17.1■□□□□ 0.33
TNFRSF1A-216ENST00000543995 ZNF280CQ8ND82 737 aa17.1■□□□□ 0.33
TNFRSF1A-216ENST00000543995 KANSL2Q9H9L4 492 aa17.1■□□□□ 0.33
TNFRSF1A-216ENST00000543995 TRIM75PA6NK02 468 aa17.09■□□□□ 0.33
TNFRSF1A-216ENST00000543995 NT5C2P49902 561 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms