RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 NOD1Q9Y239 953 aa6.31□□□□□ -1.4
CLIP1-217ENST00000543205 ANKRD31Q8N7Z5 1873 aa6.31□□□□□ -1.4
CLIP1-217ENST00000543205 N4BP2Q86UW6 1770 aaPredicted RBP6.3□□□□□ -1.4
CLIP1-217ENST00000543205 hCG_2014768A0A024R1R8 64 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 ANKRD18BA2A2Z9 1011 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 C21orf2O43822 256 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 GRIN3BO60391 1043 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 GNAI2P04899 355 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 CENPBP07199 599 aaPredicted RBP6.3□□□□□ -1.4
CLIP1-217ENST00000543205 CSF1RP07333 972 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 YBX3P16989 372 aaKnown RBP eCLIP6.3□□□□□ -1.4
CLIP1-217ENST00000543205 HSPA6P17066 643 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 ITGA6P23229 1130 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 IGHMBP2P38935 993 aaKnown RBP6.3□□□□□ -1.4
CLIP1-217ENST00000543205 RPS8P62241 208 aaKnown RBP6.3□□□□□ -1.4
CLIP1-217ENST00000543205 IFIT5Q13325 482 aaKnown RBP6.3□□□□□ -1.4
CLIP1-217ENST00000543205 CCDC57Q2TAC2 916 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 EPHA10Q5JZY3 1008 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 C20orf194Q5TEA3 1177 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 SOGA3Q5TF21 947 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 ANKRD18AQ8IVF6 992 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 KCNB2Q92953 911 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 EVI5LQ96CN4 794 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 GREM2Q9H772 168 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 PRDM10Q9NQV6 1147 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 SEC31BQ9NQW1 1179 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 CUEDC1Q9NWM3 386 aaPredicted RBP6.3□□□□□ -1.4
CLIP1-217ENST00000543205 DDX19BQ9UMR2 479 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 SUPT16HQ9Y5B9 1047 aaKnown RBP6.3□□□□□ -1.4
CLIP1-217ENST00000543205 LRRFIP2Q9Y608 721 aaKnown RBP6.3□□□□□ -1.4
CLIP1-217ENST00000543205 TNRC6CQ9HCJ0 1690 aaKnown RBP6.3□□□□□ -1.4
CLIP1-217ENST00000543205 ZBTB7BO15156 539 aaPredicted RBP6.3□□□□□ -1.4
CLIP1-217ENST00000543205 ST8SIA5O15466 376 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 GTF2F1P35269 517 aaKnown RBP eCLIP6.3□□□□□ -1.4
CLIP1-217ENST00000543205 SCTRP47872 440 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 USP4Q13107 963 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 ARHGAP27Q6ZUM4 889 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 TMC4Q7Z404 712 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 CELF1Q92879 486 aaKnown RBP6.3□□□□□ -1.4
CLIP1-217ENST00000543205 KAZALD1Q96I82 304 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 MPHOSPH8Q99549 860 aa6.3□□□□□ -1.4
CLIP1-217ENST00000543205 DDX60Q8IY21 1712 aaKnown RBP6.29□□□□□ -1.4
CLIP1-217ENST00000543205 WDR4P57081 412 aaKnown RBP6.29□□□□□ -1.4
CLIP1-217ENST00000543205 IGBP1P78318 339 aa6.29□□□□□ -1.4
CLIP1-217ENST00000543205 RABL6Q3YEC7 729 aaPredicted RBP6.29□□□□□ -1.4
CLIP1-217ENST00000543205 CCDC93Q567U6 631 aa6.29□□□□□ -1.4
CLIP1-217ENST00000543205 SP8Q8IXZ3 490 aa6.29□□□□□ -1.4
CLIP1-217ENST00000543205 ANKRD44Q8N8A2 993 aa6.29□□□□□ -1.4
CLIP1-217ENST00000543205 SGSM3Q96HU1 749 aa6.29□□□□□ -1.4
CLIP1-217ENST00000543205 ATP6V0A2Q9Y487 856 aa6.29□□□□□ -1.4
CLIP1-217ENST00000543205 RTL9Q8NET4 1388 aa6.29□□□□□ -1.4
CLIP1-217ENST00000543205 KIAA1551Q9HCM1 1747 aa6.29□□□□□ -1.4
CLIP1-217ENST00000543205 ZIC2O95409 532 aaPredicted RBP6.28□□□□□ -1.4
CLIP1-217ENST00000543205 ERVK-9P63128 1117 aa6.28□□□□□ -1.4
CLIP1-217ENST00000543205 MRPL58Q14197 206 aaKnown RBP6.28□□□□□ -1.4
CLIP1-217ENST00000543205 APBB1IPQ7Z5R6 666 aaPredicted RBP6.28□□□□□ -1.4
CLIP1-217ENST00000543205 TRIM50Q86XT4 487 aa6.28□□□□□ -1.4
CLIP1-217ENST00000543205 RTKN2Q8IZC4 609 aa6.28□□□□□ -1.4
CLIP1-217ENST00000543205 C7orf43Q8WVR3 580 aa6.28□□□□□ -1.4
CLIP1-217ENST00000543205 METTL14Q9HCE5 456 aaKnown RBP6.28□□□□□ -1.4
CLIP1-217ENST00000543205 BSDC1Q9NW68 430 aaPredicted RBP6.28□□□□□ -1.4
CLIP1-217ENST00000543205 COL11A2P13942 1736 aaPredicted RBP6.28□□□□□ -1.4
CLIP1-217ENST00000543205 LAMB2P55268 1798 aa6.28□□□□□ -1.4
CLIP1-217ENST00000543205 DLEC1Q9Y238 1755 aa6.28□□□□□ -1.4
CLIP1-217ENST00000543205 GTF2IP78347 998 aa6.28□□□□□ -1.4
CLIP1-217ENST00000543205 CTC1Q2NKJ3 1217 aa6.28□□□□□ -1.4
CLIP1-217ENST00000543205 CRTC2Q53ET0 693 aaPredicted RBP6.28□□□□□ -1.4
CLIP1-217ENST00000543205 OLFM4Q6UX06 510 aa6.28□□□□□ -1.4
CLIP1-217ENST00000543205 METTL16Q86W50 562 aaKnown RBP6.28□□□□□ -1.4
CLIP1-217ENST00000543205 NT5DC4Q86YG4 428 aa6.28□□□□□ -1.4
CLIP1-217ENST00000543205 HPS1Q92902 700 aa6.28□□□□□ -1.4
CLIP1-217ENST00000543205 ITPKCQ96DU7 683 aa6.28□□□□□ -1.4
CLIP1-217ENST00000543205 ZNF594Q96JF6 807 aaPredicted RBP6.28□□□□□ -1.4
CLIP1-217ENST00000543205 ANKIB1Q9P2G1 1089 aa6.28□□□□□ -1.4
CLIP1-217ENST00000543205 SCAMP3O14828 347 aaKnown RBP6.27□□□□□ -1.41
CLIP1-217ENST00000543205 SRGAP3O43295 1099 aa6.27□□□□□ -1.41
CLIP1-217ENST00000543205 RASA1P20936 1047 aa6.27□□□□□ -1.41
CLIP1-217ENST00000543205 ATP1A2P50993 1020 aa6.27□□□□□ -1.41
CLIP1-217ENST00000543205 DPP8Q6V1X1 898 aaPredicted RBP6.27□□□□□ -1.41
CLIP1-217ENST00000543205 LDHAL6AQ6ZMR3 332 aa6.27□□□□□ -1.41
CLIP1-217ENST00000543205 TAOK3Q9H2K8 898 aa6.27□□□□□ -1.41
CLIP1-217ENST00000543205 ZFAND3Q9H8U3 227 aa6.27□□□□□ -1.41
CLIP1-217ENST00000543205 CNNM1Q9NRU3 951 aa6.27□□□□□ -1.41
CLIP1-217ENST00000543205 ZBTB40Q9NUA8 1239 aa6.27□□□□□ -1.41
CLIP1-217ENST00000543205 NSFL1CQ9UNZ2 370 aaKnown RBP6.27□□□□□ -1.41
CLIP1-217ENST00000543205 CCDC194A0A1B0GVG4 234 aa6.26□□□□□ -1.41
CLIP1-217ENST00000543205 USP17L15C9J2P7 530 aa6.26□□□□□ -1.41
CLIP1-217ENST00000543205 USP17L10C9JJH3 530 aa6.26□□□□□ -1.41
CLIP1-217ENST00000543205 USP17L13C9JLJ4 530 aa6.26□□□□□ -1.41
CLIP1-217ENST00000543205 USP17L12C9JPN9 530 aa6.26□□□□□ -1.41
CLIP1-217ENST00000543205 USP17L11C9JVI0 530 aa6.26□□□□□ -1.41
CLIP1-217ENST00000543205 USP17L21D6R901 530 aa6.26□□□□□ -1.41
CLIP1-217ENST00000543205 USP17L18D6R9N7 530 aa6.26□□□□□ -1.41
CLIP1-217ENST00000543205 USP17L22D6RA61 530 aa6.26□□□□□ -1.41
CLIP1-217ENST00000543205 USP17L17D6RBQ6 530 aa6.26□□□□□ -1.41
CLIP1-217ENST00000543205 USP17L19D6RCP7 530 aa6.26□□□□□ -1.41
CLIP1-217ENST00000543205 USP17L20D6RJB6 530 aa6.26□□□□□ -1.41
CLIP1-217ENST00000543205 LILRA1O75019 489 aa6.26□□□□□ -1.41
CLIP1-217ENST00000543205 AVPP01185 164 aa6.26□□□□□ -1.41
CLIP1-217ENST00000543205 TIMP2P16035 220 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms