RNA–Protein interactions for RNA: ENST00000542777.1

DDX11-222, Transcript of DEAD/H-box helicase 11, human

TSL 2

Gene DDX11, Length 489 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-222	ENST00000542777	GDF11	O95390	407 aa		19.6	■□□□□ 0.73
DDX11-222	ENST00000542777	HLA-DOA	P06340	250 aa		19.6	■□□□□ 0.73
DDX11-222	ENST00000542777	FXR1	P51114	621 aa	Known RBP eCLIP	19.6	■□□□□ 0.73
DDX11-222	ENST00000542777	CEP85	Q6P2H3	762 aa		19.6	■□□□□ 0.73
DDX11-222	ENST00000542777	GINM1	Q9NU53	330 aa		19.6	■□□□□ 0.73
DDX11-222	ENST00000542777	C19orf81	C9J6K1	198 aa		19.59	■□□□□ 0.73
DDX11-222	ENST00000542777	TFRC	P02786	760 aa	Known RBP	19.59	■□□□□ 0.73
DDX11-222	ENST00000542777	IRX3	P78415	501 aa	Predicted RBP	19.59	■□□□□ 0.73
DDX11-222	ENST00000542777	SHROOM1	Q2M3G4	852 aa	Predicted RBP	19.59	■□□□□ 0.73
DDX11-222	ENST00000542777	DEFB118	Q96PH6	123 aa		19.59	■□□□□ 0.73
DDX11-222	ENST00000542777	USP17L10	C9JJH3	530 aa		19.58	■□□□□ 0.72
DDX11-222	ENST00000542777	CAPN2	P17655	700 aa		19.58	■□□□□ 0.72
DDX11-222	ENST00000542777	HOXA7	P31268	230 aa	Predicted RBP	19.58	■□□□□ 0.72
DDX11-222	ENST00000542777	ERC1	Q8IUD2	1116 aa		19.58	■□□□□ 0.72
DDX11-222	ENST00000542777	MAGEB6	Q8N7X4	407 aa		19.58	■□□□□ 0.72
DDX11-222	ENST00000542777	MIGA1	Q8NAN2	632 aa		19.58	■□□□□ 0.72
DDX11-222	ENST00000542777	P2RX7	Q99572	595 aa	Known RBP	19.58	■□□□□ 0.72
DDX11-222	ENST00000542777	MORF4L1	Q9UBU8	362 aa		19.58	■□□□□ 0.72
DDX11-222	ENST00000542777	GJD2	Q9UKL4	321 aa		19.58	■□□□□ 0.72
DDX11-222	ENST00000542777	ZBTB21	Q9ULJ3	1066 aa		19.58	■□□□□ 0.72
DDX11-222	ENST00000542777	EXOC6B	Q9Y2D4	811 aa		19.58	■□□□□ 0.72
DDX11-222	ENST00000542777	NDUFB9	Q9Y6M9	179 aa		19.58	■□□□□ 0.72
DDX11-222	ENST00000542777	MYH1	P12882	1939 aa		19.57	■□□□□ 0.72
DDX11-222	ENST00000542777	USP5	P45974	858 aa		19.57	■□□□□ 0.72
DDX11-222	ENST00000542777	CHRDL2	Q6WN34	429 aa		19.57	■□□□□ 0.72
DDX11-222	ENST00000542777	AACS	Q86V21	672 aa		19.57	■□□□□ 0.72
DDX11-222	ENST00000542777	CERS3	Q8IU89	383 aa		19.57	■□□□□ 0.72
DDX11-222	ENST00000542777	PANK1	Q8TE04	598 aa		19.57	■□□□□ 0.72
DDX11-222	ENST00000542777	ANTXR1	Q9H6X2	564 aa		19.57	■□□□□ 0.72
DDX11-222	ENST00000542777	PAK6	Q9NQU5	681 aa	Predicted RBP	19.57	■□□□□ 0.72
DDX11-222	ENST00000542777	CEP290	O15078	2479 aa		19.56	■□□□□ 0.72
DDX11-222	ENST00000542777	MAP3K12	Q12852	859 aa		19.56	■□□□□ 0.72
DDX11-222	ENST00000542777	NR2E3	Q9Y5X4	410 aa		19.56	■□□□□ 0.72
DDX11-222	ENST00000542777	HMGCR	P04035	888 aa		19.55	■□□□□ 0.72
DDX11-222	ENST00000542777	HERVK_113	P62684	666 aa		19.55	■□□□□ 0.72
DDX11-222	ENST00000542777	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	19.55	■□□□□ 0.72
DDX11-222	ENST00000542777	ZBED9	Q6R2W3	1325 aa		19.54	■□□□□ 0.72
DDX11-222	ENST00000542777	PEX10	O60683	326 aa		19.54	■□□□□ 0.72
DDX11-222	ENST00000542777	GH2	P01242	217 aa		19.54	■□□□□ 0.72
DDX11-222	ENST00000542777	HSP90AB4P	Q58FF6	505 aa		19.54	■□□□□ 0.72
DDX11-222	ENST00000542777	USP17L2	Q6R6M4	530 aa		19.54	■□□□□ 0.72
DDX11-222	ENST00000542777	GPRC5A	Q8NFJ5	357 aa		19.54	■□□□□ 0.72
DDX11-222	ENST00000542777	CRISPLD2	Q9H0B8	497 aa		19.54	■□□□□ 0.72
DDX11-222	ENST00000542777	TXNRD2	Q9NNW7	524 aa		19.54	■□□□□ 0.72
DDX11-222	ENST00000542777	IL1RAPL2	Q9NP60	686 aa		19.54	■□□□□ 0.72
DDX11-222	ENST00000542777	EMILIN3	Q9NT22	766 aa		19.54	■□□□□ 0.72
DDX11-222	ENST00000542777	PLXNB2	O15031	1838 aa		19.53	■□□□□ 0.72
DDX11-222	ENST00000542777	TATDN1	Q6P1N9	297 aa		19.53	■□□□□ 0.72
DDX11-222	ENST00000542777	TMED8	Q6PL24	325 aa	Predicted RBP	19.53	■□□□□ 0.72
DDX11-222	ENST00000542777	TTC6	Q86TZ1	520 aa		19.53	■□□□□ 0.72
DDX11-222	ENST00000542777	RHPN1	Q8TCX5	695 aa		19.53	■□□□□ 0.72
DDX11-222	ENST00000542777	RBPJL	Q9UBG7	517 aa		19.53	■□□□□ 0.72
DDX11-222	ENST00000542777	SERPINB13	Q9UIV8	391 aa		19.53	■□□□□ 0.72
DDX11-222	ENST00000542777	RPTOR	Q8N122	1335 aa		19.52	■□□□□ 0.72
DDX11-222	ENST00000542777	MS4A1	P11836	297 aa		19.52	■□□□□ 0.72
DDX11-222	ENST00000542777	CYP2B6	P20813	491 aa		19.52	■□□□□ 0.72
DDX11-222	ENST00000542777	TRIM32	Q13049	653 aa		19.52	■□□□□ 0.72
DDX11-222	ENST00000542777	PAWR	Q96IZ0	340 aa	Known RBP	19.52	■□□□□ 0.72
DDX11-222	ENST00000542777	NUDT12	Q9BQG2	462 aa		19.52	■□□□□ 0.72
DDX11-222	ENST00000542777	EHD4	Q9H223	541 aa		19.52	■□□□□ 0.72
DDX11-222	ENST00000542777	HMX1	Q9NP08	348 aa	Predicted RBP	19.52	■□□□□ 0.72
DDX11-222	ENST00000542777	RBM27	Q9P2N5	1060 aa	Known RBP	19.52	■□□□□ 0.72
DDX11-222	ENST00000542777	EVI5	O60447	810 aa		19.51	■□□□□ 0.71
DDX11-222	ENST00000542777	TTF1	Q15361	905 aa	Predicted RBP	19.51	■□□□□ 0.71
DDX11-222	ENST00000542777		Q3C1V9	767 aa		19.51	■□□□□ 0.71
DDX11-222	ENST00000542777	GTF3C2	Q8WUA4	911 aa	Predicted RBP	19.51	■□□□□ 0.71
DDX11-222	ENST00000542777	PAGR1	Q9BTK6	254 aa		19.51	■□□□□ 0.71
DDX11-222	ENST00000542777	MAPK4	P31152	587 aa		19.5	■□□□□ 0.71
DDX11-222	ENST00000542777	ERVK-9	P63128	1117 aa		19.5	■□□□□ 0.71
DDX11-222	ENST00000542777	ERVK-24	P63145	666 aa		19.5	■□□□□ 0.71
DDX11-222	ENST00000542777	RAB3GAP1	Q15042	981 aa		19.5	■□□□□ 0.71
DDX11-222	ENST00000542777	ZYX	Q15942	572 aa	Known RBP	19.5	■□□□□ 0.71
DDX11-222	ENST00000542777	CERKL	Q49MI3	558 aa	Predicted RBP	19.5	■□□□□ 0.71
DDX11-222	ENST00000542777	NECAB2	Q7Z6G3	386 aa		19.5	■□□□□ 0.71
DDX11-222	ENST00000542777	CCAR1	Q8IX12	1150 aa	Known RBP	19.5	■□□□□ 0.71
DDX11-222	ENST00000542777	CLASRP	Q8N2M8	674 aa	Known RBP	19.5	■□□□□ 0.71
DDX11-222	ENST00000542777	TRIB2	Q92519	343 aa		19.5	■□□□□ 0.71
DDX11-222	ENST00000542777	FEZ1	Q99689	392 aa		19.5	■□□□□ 0.71
DDX11-222	ENST00000542777	RIOK1	Q9BRS2	568 aa	Known RBP	19.5	■□□□□ 0.71
DDX11-222	ENST00000542777	MAGEB6P1	A0A0J9YX57	407 aa		19.49	■□□□□ 0.71
DDX11-222	ENST00000542777	APBB1	O00213	710 aa		19.49	■□□□□ 0.71
DDX11-222	ENST00000542777	PLCD1	P51178	756 aa		19.49	■□□□□ 0.71
DDX11-222	ENST00000542777	PDE3A	Q14432	1141 aa		19.49	■□□□□ 0.71
DDX11-222	ENST00000542777	ABCB5	Q2M3G0	1257 aa		19.49	■□□□□ 0.71
DDX11-222	ENST00000542777	RPAP2	Q8IXW5	612 aa	Predicted RBP	19.49	■□□□□ 0.71
DDX11-222	ENST00000542777	ANKLE1	Q8NAG6	615 aa		19.49	■□□□□ 0.71
DDX11-222	ENST00000542777	DIS3L	Q8TF46	1054 aa	Known RBP	19.49	■□□□□ 0.71
DDX11-222	ENST00000542777	SOCS4	Q8WXH5	440 aa		19.49	■□□□□ 0.71
DDX11-222	ENST00000542777	KIF1BP	Q96EK5	621 aa		19.49	■□□□□ 0.71
DDX11-222	ENST00000542777	C12orf42	Q96LP6	360 aa		19.49	■□□□□ 0.71
DDX11-222	ENST00000542777	PORCN	Q9H237	461 aa		19.49	■□□□□ 0.71
DDX11-222	ENST00000542777	CABP5	Q9NP86	173 aa		19.49	■□□□□ 0.71
DDX11-222	ENST00000542777	TRIOBP	Q9H2D6	2365 aa		19.49	■□□□□ 0.71
DDX11-222	ENST00000542777	USP17L15	C9J2P7	530 aa		19.48	■□□□□ 0.71
DDX11-222	ENST00000542777	USP17L13	C9JLJ4	530 aa		19.48	■□□□□ 0.71
DDX11-222	ENST00000542777	USP17L11	C9JVI0	530 aa		19.48	■□□□□ 0.71
DDX11-222	ENST00000542777	USP17L18	D6R9N7	530 aa		19.48	■□□□□ 0.71
DDX11-222	ENST00000542777	USP17L22	D6RA61	530 aa		19.48	■□□□□ 0.71
DDX11-222	ENST00000542777	USP17L17	D6RBQ6	530 aa		19.48	■□□□□ 0.71
DDX11-222	ENST00000542777	USP17L19	D6RCP7	530 aa		19.48	■□□□□ 0.71

Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms