RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 C16orf45Q96MC5 204 aaPredicted RBP12.64□□□□□ -0.39
CDH3-203ENST00000542274 MTRQ99707 1265 aa12.64□□□□□ -0.39
CDH3-203ENST00000542274 ZNF215Q9UL58 517 aaPredicted RBP12.64□□□□□ -0.39
CDH3-203ENST00000542274 COL5A3P25940 1745 aaPredicted RBP12.64□□□□□ -0.39
CDH3-203ENST00000542274 BRWD3Q6RI45 1802 aa12.63□□□□□ -0.39
CDH3-203ENST00000542274 TRPC1P48995 793 aa12.63□□□□□ -0.39
CDH3-203ENST00000542274 HSP90B2PQ58FF3 399 aa12.63□□□□□ -0.39
CDH3-203ENST00000542274 SMARCC1Q92922 1105 aaPredicted RBP12.63□□□□□ -0.39
CDH3-203ENST00000542274 IL17RAQ96F46 866 aa12.63□□□□□ -0.39
CDH3-203ENST00000542274 DUSP9Q99956 384 aaKnown RBP12.63□□□□□ -0.39
CDH3-203ENST00000542274 UBA5Q9GZZ9 404 aa12.63□□□□□ -0.39
CDH3-203ENST00000542274 PSD3Q9NYI0 1048 aa12.63□□□□□ -0.39
CDH3-203ENST00000542274 ITM2BQ9Y287 266 aa12.63□□□□□ -0.39
CDH3-203ENST00000542274 CYP11B2P19099 503 aa12.63□□□□□ -0.39
CDH3-203ENST00000542274 LAMB3Q13751 1172 aa12.63□□□□□ -0.39
CDH3-203ENST00000542274 NLRP10Q86W26 655 aa12.63□□□□□ -0.39
CDH3-203ENST00000542274 CACTIN-AS1Q8N1I8 211 aa12.63□□□□□ -0.39
CDH3-203ENST00000542274 NECAB1Q8N987 351 aa12.63□□□□□ -0.39
CDH3-203ENST00000542274 DHRS1Q96LJ7 313 aa12.63□□□□□ -0.39
CDH3-203ENST00000542274 TSGA10Q9BZW7 698 aa12.63□□□□□ -0.39
CDH3-203ENST00000542274 TRIM7Q9C029 511 aa12.63□□□□□ -0.39
CDH3-203ENST00000542274 MMADHCQ9H3L0 296 aaPredicted RBP12.63□□□□□ -0.39
CDH3-203ENST00000542274 GPBP1L1Q9HC44 474 aaPredicted RBP12.63□□□□□ -0.39
CDH3-203ENST00000542274 SPATA7Q9P0W8 599 aa12.63□□□□□ -0.39
CDH3-203ENST00000542274 NHSQ6T4R5 1651 aa12.63□□□□□ -0.39
CDH3-203ENST00000542274 UBN2Q6ZU65 1347 aa12.62□□□□□ -0.39
CDH3-203ENST00000542274 KIF2AO00139 706 aaPredicted RBP12.62□□□□□ -0.39
CDH3-203ENST00000542274 MCM2P49736 904 aa12.62□□□□□ -0.39
CDH3-203ENST00000542274 CCDC83Q8IWF9 413 aa12.62□□□□□ -0.39
CDH3-203ENST00000542274 MAP4K1Q92918 833 aa12.62□□□□□ -0.39
CDH3-203ENST00000542274 EXOC4Q96A65 974 aa12.62□□□□□ -0.39
CDH3-203ENST00000542274 ANKIB1Q9P2G1 1089 aa12.62□□□□□ -0.39
CDH3-203ENST00000542274 A0A0G2JLW4 131 aa12.62□□□□□ -0.39
CDH3-203ENST00000542274 ATP5JP18859 108 aa12.62□□□□□ -0.39
CDH3-203ENST00000542274 VCAM1P19320 739 aa12.62□□□□□ -0.39
CDH3-203ENST00000542274 OAS2P29728 719 aaKnown RBP12.62□□□□□ -0.39
CDH3-203ENST00000542274 ST3GAL1Q11201 340 aa12.62□□□□□ -0.39
CDH3-203ENST00000542274 ZFYVE27Q5T4F4 411 aa12.62□□□□□ -0.39
CDH3-203ENST00000542274 SPDYE1Q8NFV5 336 aaPredicted RBP12.62□□□□□ -0.39
CDH3-203ENST00000542274 B4GALNT2Q8NHY0 566 aa12.62□□□□□ -0.39
CDH3-203ENST00000542274 KCNF1Q9H3M0 494 aa12.62□□□□□ -0.39
CDH3-203ENST00000542274 ODF2LQ9ULJ1 636 aa12.62□□□□□ -0.39
CDH3-203ENST00000542274 ERLIN2O94905 339 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 MRPL12P52815 198 aaKnown RBP12.61□□□□□ -0.39
CDH3-203ENST00000542274 TTC30BQ8N4P2 665 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 TRIML1Q8N9V2 468 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 SNRKQ9NRH2 765 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 RABL2AQ9UBK7 228 aaPredicted RBP12.61□□□□□ -0.39
CDH3-203ENST00000542274 USP25Q9UHP3 1055 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 ZNF609O15014 1411 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 RTN3O95197 1032 aaPredicted RBP12.61□□□□□ -0.39
CDH3-203ENST00000542274 ADORA1P30542 326 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 ZNF394Q53GI3 561 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 CCDC70Q6NSX1 233 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 MED23Q9ULK4 1368 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 RREB1Q92766 1687 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 FRMD3A2A2Y4 597 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 ADCY5O95622 1261 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 H2AFXP16104 143 aaPredicted RBP12.61□□□□□ -0.39
CDH3-203ENST00000542274 LMNB1P20700 586 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 VPS53Q5VIR6 699 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 SYNE3Q6ZMZ3 975 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 TMEM63CQ9P1W3 806 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 TRMT112Q9UI30 125 aaKnown RBP12.61□□□□□ -0.39
CDH3-203ENST00000542274 MAPK8IP1Q9UQF2 711 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 TMEM98Q9Y2Y6 226 aa12.61□□□□□ -0.39
CDH3-203ENST00000542274 RPAP1Q9BWH6 1393 aaPredicted RBP12.6□□□□□ -0.39
CDH3-203ENST00000542274 A0A1B0GUA9 196 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 EYA2O00167 538 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 KIF5CO60282 957 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 TAF5LO75529 589 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 PCCAP05165 728 aaPredicted RBP12.6□□□□□ -0.39
CDH3-203ENST00000542274 CLCN6P51797 869 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 MPP3Q13368 585 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 ME3Q16798 604 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 TRIM11Q96F44 468 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 FAM81BQ96LP2 452 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 ENO4A6NNW6 628 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.6□□□□□ -0.39
CDH3-203ENST00000542274 TIMM44O43615 452 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 CAMTA2O94983 1202 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 CCDC175P0C221 793 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 RRP12Q5JTH9 1297 aaKnown RBP12.6□□□□□ -0.39
CDH3-203ENST00000542274 WDR78Q5VTH9 848 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 FBXW10Q5XX13 1052 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 PI16Q6UXB8 463 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 AMIGO3Q86WK7 504 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 ZBTB38Q8NAP3 1195 aaPredicted RBP12.6□□□□□ -0.39
CDH3-203ENST00000542274 ZSWIM6Q9HCJ5 1215 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 CCNL1Q9UK58 526 aaPredicted RBP12.6□□□□□ -0.39
CDH3-203ENST00000542274 LIMCH1Q9UPQ0 1083 aa12.6□□□□□ -0.39
CDH3-203ENST00000542274 MYH3P11055 1940 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 LRRC10BA6NIK2 292 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 PSMC1P62191 440 aaKnown RBP12.59□□□□□ -0.39
CDH3-203ENST00000542274 TRIM28Q13263 835 aaKnown RBP12.59□□□□□ -0.39
CDH3-203ENST00000542274 SF3B2Q13435 895 aaKnown RBP12.59□□□□□ -0.39
CDH3-203ENST00000542274 IQCB1Q15051 598 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 ERO1AQ96HE7 468 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 INTS4Q96HW7 963 aaKnown RBP12.59□□□□□ -0.39
CDH3-203ENST00000542274 HAUS7Q99871 368 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms