RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 DCTPP1Q9H773 170 aa10.62□□□□□ -0.71
CLSTN3-212ENST00000541770 AS3MTQ9HBK9 375 aa10.62□□□□□ -0.71
CLSTN3-212ENST00000541770 CWC22Q9HCG8 908 aaKnown RBP10.62□□□□□ -0.71
CLSTN3-212ENST00000541770 GJD2Q9UKL4 321 aa10.62□□□□□ -0.71
CLSTN3-212ENST00000541770 OGDHLQ9ULD0 1010 aa10.62□□□□□ -0.71
CLSTN3-212ENST00000541770 EXOC6BQ9Y2D4 811 aa10.62□□□□□ -0.71
CLSTN3-212ENST00000541770 RFX7Q2KHR2 1363 aa10.62□□□□□ -0.71
CLSTN3-212ENST00000541770 PFASO15067 1338 aa10.61□□□□□ -0.71
CLSTN3-212ENST00000541770 COL6A3P12111 3177 aa10.61□□□□□ -0.71
CLSTN3-212ENST00000541770 RANBP2P49792 3224 aaKnown RBP10.61□□□□□ -0.71
CLSTN3-212ENST00000541770 USP17L5A8MUK1 530 aa10.61□□□□□ -0.71
CLSTN3-212ENST00000541770 ZKSCAN1P17029 563 aaPredicted RBP10.61□□□□□ -0.71
CLSTN3-212ENST00000541770 TIMM10P62072 90 aa10.61□□□□□ -0.71
CLSTN3-212ENST00000541770 IRX6P78412 446 aaPredicted RBP10.61□□□□□ -0.71
CLSTN3-212ENST00000541770 MECOMQ03112 1051 aa10.61□□□□□ -0.71
CLSTN3-212ENST00000541770 RASGRF1Q13972 1273 aa10.61□□□□□ -0.71
CLSTN3-212ENST00000541770 RHPN1Q8TCX5 695 aa10.61□□□□□ -0.71
CLSTN3-212ENST00000541770 KIF1BPQ96EK5 621 aa10.61□□□□□ -0.71
CLSTN3-212ENST00000541770 TMOD4Q9NZQ9 345 aa10.61□□□□□ -0.71
CLSTN3-212ENST00000541770 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.61□□□□□ -0.71
CLSTN3-212ENST00000541770 A0A1B0GUL7 405 aa10.6□□□□□ -0.71
CLSTN3-212ENST00000541770 TBC1D12O60347 775 aa10.6□□□□□ -0.71
CLSTN3-212ENST00000541770 CCND3P30281 292 aaPredicted RBP10.6□□□□□ -0.71
CLSTN3-212ENST00000541770 CAP2P40123 477 aa10.6□□□□□ -0.71
CLSTN3-212ENST00000541770 MTMR2Q13614 643 aa10.6□□□□□ -0.71
CLSTN3-212ENST00000541770 LRRC26Q2I0M4 334 aa10.6□□□□□ -0.71
CLSTN3-212ENST00000541770 TNNI3KQ59H18 835 aa10.6□□□□□ -0.71
CLSTN3-212ENST00000541770 PIAS4Q8N2W9 510 aaPredicted RBP10.6□□□□□ -0.71
CLSTN3-212ENST00000541770 NEUROD6Q96NK8 337 aa10.6□□□□□ -0.71
CLSTN3-212ENST00000541770 LBHD1Q9BQE6 289 aaPredicted RBP10.6□□□□□ -0.71
CLSTN3-212ENST00000541770 PAGR1Q9BTK6 254 aa10.6□□□□□ -0.71
CLSTN3-212ENST00000541770 TBC1D2Q9BYX2 928 aa10.6□□□□□ -0.71
CLSTN3-212ENST00000541770 FPGT-TNNI3KV9GXZ4 949 aa10.6□□□□□ -0.71
CLSTN3-212ENST00000541770 GPR75-ASB3A0A0A6YYF3 556 aa10.59□□□□□ -0.71
CLSTN3-212ENST00000541770 LDHCP07864 332 aa10.59□□□□□ -0.71
CLSTN3-212ENST00000541770 RHBDL3P58872 404 aa10.59□□□□□ -0.71
CLSTN3-212ENST00000541770 CACNB2Q08289 660 aaPredicted RBP10.59□□□□□ -0.71
CLSTN3-212ENST00000541770 RRP1BQ14684 758 aaKnown RBP10.59□□□□□ -0.71
CLSTN3-212ENST00000541770 TEX11Q8IYF3 940 aa10.59□□□□□ -0.71
CLSTN3-212ENST00000541770 CLASRPQ8N2M8 674 aaKnown RBP10.59□□□□□ -0.71
CLSTN3-212ENST00000541770 GPRC5AQ8NFJ5 357 aa10.59□□□□□ -0.71
CLSTN3-212ENST00000541770 SOCS4Q8WXH5 440 aa10.59□□□□□ -0.71
CLSTN3-212ENST00000541770 FAM163AQ96GL9 167 aaPredicted RBP10.59□□□□□ -0.71
CLSTN3-212ENST00000541770 XAGE2Q96GT9 111 aa10.59□□□□□ -0.71
CLSTN3-212ENST00000541770 P2RX7Q99572 595 aaKnown RBP10.59□□□□□ -0.71
CLSTN3-212ENST00000541770 NOL10Q9BSC4 688 aaKnown RBP10.59□□□□□ -0.71
CLSTN3-212ENST00000541770 TRIM34Q9BYJ4 488 aa10.59□□□□□ -0.71
CLSTN3-212ENST00000541770 RWDD1Q9H446 243 aaPredicted RBP10.59□□□□□ -0.71
CLSTN3-212ENST00000541770 RAI14Q9P0K7 980 aa10.59□□□□□ -0.71
CLSTN3-212ENST00000541770 MAST2Q6P0Q8 1798 aa10.59□□□□□ -0.71
CLSTN3-212ENST00000541770 SIPA1L1O43166 1804 aa10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 CDK5RAP2Q96SN8 1893 aa10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 CNGA1P29973 690 aa10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 RGS2P41220 211 aa10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 HERVK_113P62684 666 aa10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 GSTO1P78417 241 aa10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 CCL14Q16627 93 aa10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 SH3D19Q5HYK7 790 aa10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 GORABQ5T7V8 394 aa10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 MAP3K21Q5TCX8 1036 aa10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 ZNF697Q5TEC3 545 aa10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 WDR78Q5VTH9 848 aa10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 TBC1D9Q6ZT07 1266 aa10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 TRMT44Q8IYL2 757 aaKnown RBP10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 EAF2Q96CJ1 260 aaPredicted RBP10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 LRRCC1Q9C099 1032 aa10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 SENP6Q9GZR1 1112 aaPredicted RBP10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 TXNRD2Q9NNW7 524 aa10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 MORF4L1Q9UBU8 362 aa10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 PRKAG2Q9UGJ0 569 aa10.58□□□□□ -0.72
CLSTN3-212ENST00000541770 GDF11O95390 407 aa10.57□□□□□ -0.72
CLSTN3-212ENST00000541770 NEFLP07196 543 aa10.57□□□□□ -0.72
CLSTN3-212ENST00000541770 COL6A1P12109 1028 aa10.57□□□□□ -0.72
CLSTN3-212ENST00000541770 MAPK4P31152 587 aa10.57□□□□□ -0.72
CLSTN3-212ENST00000541770 ATN1P54259 1190 aaPredicted RBP10.57□□□□□ -0.72
CLSTN3-212ENST00000541770 BACE1P56817 501 aa10.57□□□□□ -0.72
CLSTN3-212ENST00000541770 Q3C1V9 767 aa10.57□□□□□ -0.72
CLSTN3-212ENST00000541770 PI16Q6UXB8 463 aa10.57□□□□□ -0.72
CLSTN3-212ENST00000541770 GPR142Q7Z601 462 aa10.57□□□□□ -0.72
CLSTN3-212ENST00000541770 PLEKHH3Q7Z736 793 aa10.57□□□□□ -0.72
CLSTN3-212ENST00000541770 CRACR2BQ8N4Y2 399 aaPredicted RBP10.57□□□□□ -0.72
CLSTN3-212ENST00000541770 GUCD1Q96NT3 240 aa10.57□□□□□ -0.72
CLSTN3-212ENST00000541770 PORCNQ9H237 461 aa10.57□□□□□ -0.72
CLSTN3-212ENST00000541770 IL1RAPL2Q9NP60 686 aa10.57□□□□□ -0.72
CLSTN3-212ENST00000541770 HERC5Q9UII4 1024 aaKnown RBP10.57□□□□□ -0.72
CLSTN3-212ENST00000541770 NDUFB9Q9Y6M9 179 aa10.57□□□□□ -0.72
CLSTN3-212ENST00000541770 PDS5AQ29RF7 1337 aaKnown RBP10.57□□□□□ -0.72
CLSTN3-212ENST00000541770 USP17L10C9JJH3 530 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 APBB1O00213 710 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 NPM3O75607 178 aaKnown RBP10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 IGHDP01880 384 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 ASNSP08243 561 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 UQCRFS1P1P0C7P4 283 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 XRCC5P13010 732 aaKnown RBP10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 ARID4AP29374 1257 aaPredicted RBP10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 ERVK-9P63128 1117 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 ERVK-24P63145 666 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 CCDC158Q5M9N0 1113 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 LHX8Q68G74 356 aa10.56□□□□□ -0.72
CLSTN3-212ENST00000541770 AACSQ86V21 672 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms