RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 HLA-DOAP06340 250 aa15.05■□□□□ -0
SNHG1-216ENST00000541416 MNX1P50219 401 aaPredicted RBP15.05■□□□□ -0
SNHG1-216ENST00000541416 LRIT3Q3SXY7 679 aa15.05■□□□□ -0
SNHG1-216ENST00000541416 CCDC158Q5M9N0 1113 aa15.05■□□□□ -0
SNHG1-216ENST00000541416 PI16Q6UXB8 463 aa15.05■□□□□ -0
SNHG1-216ENST00000541416 DEFB123Q8N688 67 aa15.05■□□□□ -0
SNHG1-216ENST00000541416 SH3RF3Q8TEJ3 882 aaPredicted RBP15.05■□□□□ -0
SNHG1-216ENST00000541416 ZNF384Q8TF68 577 aa15.05■□□□□ -0
SNHG1-216ENST00000541416 TRIB2Q92519 343 aa15.05■□□□□ -0
SNHG1-216ENST00000541416 UBE2OQ9C0C9 1292 aaKnown RBP15.05■□□□□ -0
SNHG1-216ENST00000541416 DDX60LQ5H9U9 1706 aaKnown RBP15.05■□□□□ -0
SNHG1-216ENST00000541416 ALPK3Q96L96 1907 aa15.05■□□□□ -0
SNHG1-216ENST00000541416 GLRX3O76003 335 aaKnown RBP15.04■□□□□ -0
SNHG1-216ENST00000541416 RGS2P41220 211 aa15.04■□□□□ -0
SNHG1-216ENST00000541416 MAGEA10P43363 369 aaPredicted RBP15.04■□□□□ -0
SNHG1-216ENST00000541416 TTC39AQ5SRH9 613 aa15.04■□□□□ -0
SNHG1-216ENST00000541416 MAP3K21Q5TCX8 1036 aa15.04■□□□□ -0
SNHG1-216ENST00000541416 AATFQ9NY61 560 aaKnown RBP eCLIP15.04■□□□□ -01e-323■□□□□ 9
SNHG1-216ENST00000541416 SYN1P17600 705 aa15.03■□□□□ -0
SNHG1-216ENST00000541416 MCAMP43121 646 aa15.03■□□□□ -0
SNHG1-216ENST00000541416 PPP4CP60510 307 aa15.03■□□□□ -0
SNHG1-216ENST00000541416 CCNA1P78396 465 aa15.03■□□□□ -0
SNHG1-216ENST00000541416 TRIM32Q13049 653 aa15.03■□□□□ -0
SNHG1-216ENST00000541416 CERS3Q8IU89 383 aa15.03■□□□□ -0
SNHG1-216ENST00000541416 TGFBRAP1Q8WUH2 860 aa15.03■□□□□ -0
SNHG1-216ENST00000541416 P2RX7Q99572 595 aaKnown RBP15.03■□□□□ -0
SNHG1-216ENST00000541416 RARSP54136 660 aaKnown RBP15.02■□□□□ -0
SNHG1-216ENST00000541416 ERVK-9P63128 1117 aa15.02■□□□□ -0
SNHG1-216ENST00000541416 ERVK-24P63145 666 aa15.02■□□□□ -0
SNHG1-216ENST00000541416 RRP1BQ14684 758 aaKnown RBP15.02■□□□□ -0
SNHG1-216ENST00000541416 USP17L2Q6R6M4 530 aa15.02■□□□□ -0
SNHG1-216ENST00000541416 APBA2Q99767 749 aa15.02■□□□□ -0
SNHG1-216ENST00000541416 GPR108Q9NPR9 543 aa15.02■□□□□ -0
SNHG1-216ENST00000541416 STXBP5LQ9Y2K9 1186 aa15.02■□□□□ -0
SNHG1-216ENST00000541416 LAMA2P24043 3122 aaKnown RBP15.02□□□□□ -0.01
SNHG1-216ENST00000541416 MAST2Q6P0Q8 1798 aa15.01□□□□□ -0.01
SNHG1-216ENST00000541416 FLT1P17948 1338 aa15.01□□□□□ -0.01
SNHG1-216ENST00000541416 OS9Q13438 667 aaPredicted RBP15.01□□□□□ -0.01
SNHG1-216ENST00000541416 PLEKHH3Q7Z736 793 aa15.01□□□□□ -0.01
SNHG1-216ENST00000541416 METTL16Q86W50 562 aaKnown RBP15.01□□□□□ -0.01
SNHG1-216ENST00000541416 MAPKAPK5Q8IW41 473 aa15.01□□□□□ -0.01
SNHG1-216ENST00000541416 FEZ1Q99689 392 aa15.01□□□□□ -0.01
SNHG1-216ENST00000541416 PAGR1Q9BTK6 254 aa15.01□□□□□ -0.01
SNHG1-216ENST00000541416 ZBTB21Q9ULJ3 1066 aa15.01□□□□□ -0.01
SNHG1-216ENST00000541416 GDF11O95390 407 aa15□□□□□ -0.01
SNHG1-216ENST00000541416 USP14P54578 494 aa15□□□□□ -0.01
SNHG1-216ENST00000541416 CACNB2Q08289 660 aaPredicted RBP15□□□□□ -0.01
SNHG1-216ENST00000541416 MFSD14CQ5VZR4 134 aa15□□□□□ -0.01
SNHG1-216ENST00000541416 GPR142Q7Z601 462 aa15□□□□□ -0.01
SNHG1-216ENST00000541416 LBHD1Q9BQE6 289 aaPredicted RBP15□□□□□ -0.01
SNHG1-216ENST00000541416 RBPJLQ9UBG7 517 aa15□□□□□ -0.01
SNHG1-216ENST00000541416 PALD1Q9ULE6 856 aa15□□□□□ -0.01
SNHG1-216ENST00000541416 RABGAP1Q9Y3P9 1069 aa15□□□□□ -0.01
SNHG1-216ENST00000541416 IVNS1ABPQ9Y6Y0 642 aa15□□□□□ -0.01
SNHG1-216ENST00000541416 PLXNB2O15031 1838 aa15□□□□□ -0.01
SNHG1-216ENST00000541416 PFASO15067 1338 aa14.99□□□□□ -0.01
SNHG1-216ENST00000541416 USP17L15C9J2P7 530 aa14.99□□□□□ -0.01
SNHG1-216ENST00000541416 USP17L13C9JLJ4 530 aa14.99□□□□□ -0.01
SNHG1-216ENST00000541416 USP17L11C9JVI0 530 aa14.99□□□□□ -0.01
SNHG1-216ENST00000541416 USP17L18D6R9N7 530 aa14.99□□□□□ -0.01
SNHG1-216ENST00000541416 USP17L22D6RA61 530 aa14.99□□□□□ -0.01
SNHG1-216ENST00000541416 USP17L17D6RBQ6 530 aa14.99□□□□□ -0.01
SNHG1-216ENST00000541416 USP17L19D6RCP7 530 aa14.99□□□□□ -0.01
SNHG1-216ENST00000541416 USP17L20D6RJB6 530 aa14.99□□□□□ -0.01
SNHG1-216ENST00000541416 MSCO60682 206 aa14.99□□□□□ -0.01
SNHG1-216ENST00000541416 USP17L24Q0WX57 530 aa14.99□□□□□ -0.01
SNHG1-216ENST00000541416 MORN1Q5T089 497 aa14.99□□□□□ -0.01
SNHG1-216ENST00000541416 EDC3Q96F86 508 aaKnown RBP14.99□□□□□ -0.01
SNHG1-216ENST00000541416 TXNRD2Q9NNW7 524 aa14.99□□□□□ -0.01
SNHG1-216ENST00000541416 SNRKQ9NRH2 765 aa14.99□□□□□ -0.01
SNHG1-216ENST00000541416 COL6A1P12109 1028 aa14.98□□□□□ -0.01
SNHG1-216ENST00000541416 MAP2K5Q13163 448 aa14.98□□□□□ -0.01
SNHG1-216ENST00000541416 TNNI3KQ59H18 835 aa14.98□□□□□ -0.01
SNHG1-216ENST00000541416 WDR78Q5VTH9 848 aa14.98□□□□□ -0.01
SNHG1-216ENST00000541416 TMED8Q6PL24 325 aaPredicted RBP14.98□□□□□ -0.01
SNHG1-216ENST00000541416 USP6NLQ92738 828 aa14.98□□□□□ -0.01
SNHG1-216ENST00000541416 ZNF512BQ96KM6 892 aaPredicted RBP14.98□□□□□ -0.01
SNHG1-216ENST00000541416 PORCNQ9H237 461 aa14.98□□□□□ -0.01
SNHG1-216ENST00000541416 MTMR10Q9NXD2 777 aa14.98□□□□□ -0.01
SNHG1-216ENST00000541416 PRKAG2Q9UGJ0 569 aa14.98□□□□□ -0.01
SNHG1-216ENST00000541416 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.98□□□□□ -0.01
SNHG1-216ENST00000541416 FPGT-TNNI3KV9GXZ4 949 aa14.98□□□□□ -0.01
SNHG1-216ENST00000541416 FOCADQ5VW36 1801 aa14.98□□□□□ -0.01
SNHG1-216ENST00000541416 UNC80Q8N2C7 3258 aa14.98□□□□□ -0.01
SNHG1-216ENST00000541416 SIPA1L1O43166 1804 aa14.97□□□□□ -0.01
SNHG1-216ENST00000541416 PNMA6EA0A0J9YXQ4 647 aa14.97□□□□□ -0.01
SNHG1-216ENST00000541416 GH2P01242 217 aa14.97□□□□□ -0.01
SNHG1-216ENST00000541416 TRIM27P14373 513 aa14.97□□□□□ -0.01
SNHG1-216ENST00000541416 USP5P45974 858 aa14.97□□□□□ -0.01
SNHG1-216ENST00000541416 Q3C1V9 767 aa14.97□□□□□ -0.01
SNHG1-216ENST00000541416 LHX8Q68G74 356 aa14.97□□□□□ -0.01
SNHG1-216ENST00000541416 Q7L0L9 218 aa14.97□□□□□ -0.01
SNHG1-216ENST00000541416 FRAT1Q92837 279 aaPredicted RBP14.97□□□□□ -0.01
SNHG1-216ENST00000541416 C12orf42Q96LP6 360 aa14.97□□□□□ -0.01
SNHG1-216ENST00000541416 DNAJC18Q9H819 358 aa14.97□□□□□ -0.01
SNHG1-216ENST00000541416 CABP5Q9NP86 173 aa14.97□□□□□ -0.01
SNHG1-216ENST00000541416 EMILIN3Q9NT22 766 aa14.97□□□□□ -0.01
SNHG1-216ENST00000541416 SAP30BPQ9UHR5 308 aaKnown RBP14.97□□□□□ -0.01
SNHG1-216ENST00000541416 SLC15A5A6NIM6 579 aa14.96□□□□□ -0.01
SNHG1-216ENST00000541416 CYP2E1P05181 493 aaPredicted RBP14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms