RNA–Protein interactions for RNA: ENST00000540963.1

CHFR-218, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 875 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-218ENST00000540963 GTF3C2Q8WUA4 911 aaPredicted RBP32.94■■■□□ 2.86
CHFR-218ENST00000540963 HERVK_113P62684 666 aa32.93■■■□□ 2.86
CHFR-218ENST00000540963 NAA16Q6N069 864 aaPredicted RBP32.93■■■□□ 2.86
CHFR-218ENST00000540963 P2RX7Q99572 595 aaKnown RBP32.93■■■□□ 2.86
CHFR-218ENST00000540963 GPR108Q9NPR9 543 aa32.93■■■□□ 2.86
CHFR-218ENST00000540963 IPO8O15397 1037 aaKnown RBP32.92■■■□□ 2.86
CHFR-218ENST00000540963 MAPK4P31152 587 aa32.92■■■□□ 2.86
CHFR-218ENST00000540963 USP17L10C9JJH3 530 aa32.91■■■□□ 2.86
CHFR-218ENST00000540963 CYP2B6P20813 491 aa32.91■■■□□ 2.86
CHFR-218ENST00000540963 LRIT3Q3SXY7 679 aa32.91■■■□□ 2.86
CHFR-218ENST00000540963 AATFQ9NY61 560 aaKnown RBP eCLIP32.91■■■□□ 2.86
CHFR-218ENST00000540963 DLL1O00548 723 aa32.9■■■□□ 2.86
CHFR-218ENST00000540963 PRKAR2AP13861 404 aaKnown RBP32.9■■■□□ 2.86
CHFR-218ENST00000540963 PDE3AQ14432 1141 aa32.9■■■□□ 2.86
CHFR-218ENST00000540963 DNAJC18Q9H819 358 aa32.9■■■□□ 2.86
CHFR-218ENST00000540963 ZMYND8Q9ULU4 1186 aaPredicted RBP32.9■■■□□ 2.86
CHFR-218ENST00000540963 FLT1P17948 1338 aa32.89■■■□□ 2.86
CHFR-218ENST00000540963 PNMA6EA0A0J9YXQ4 647 aa32.89■■■□□ 2.86
CHFR-218ENST00000540963 CRACR2BQ8N4Y2 399 aaPredicted RBP32.89■■■□□ 2.86
CHFR-218ENST00000540963 TGFBRAP1Q8WUH2 860 aa32.89■■■□□ 2.86
CHFR-218ENST00000540963 TRIM34Q9BYJ4 488 aa32.89■■■□□ 2.86
CHFR-218ENST00000540963 TXNRD2Q9NNW7 524 aa32.89■■■□□ 2.86
CHFR-218ENST00000540963 CCDC158Q5M9N0 1113 aa32.88■■■□□ 2.85
CHFR-218ENST00000540963 USP6NLQ92738 828 aa32.88■■■□□ 2.85
CHFR-218ENST00000540963 ZNF512BQ96KM6 892 aaPredicted RBP32.88■■■□□ 2.85
CHFR-218ENST00000540963 RBPJLQ9UBG7 517 aa32.88■■■□□ 2.85
CHFR-218ENST00000540963 ATF7IPQ6VMQ6 1270 aa32.87■■■□□ 2.85
CHFR-218ENST00000540963 ZBTB21Q9ULJ3 1066 aa32.87■■■□□ 2.85
CHFR-218ENST00000540963 TRIM27P14373 513 aa32.86■■■□□ 2.85
CHFR-218ENST00000540963 ZKSCAN1P17029 563 aaPredicted RBP32.86■■■□□ 2.85
CHFR-218ENST00000540963 ERVK-9P63128 1117 aa32.86■■■□□ 2.85
CHFR-218ENST00000540963 ERVK-24P63145 666 aa32.86■■■□□ 2.85
CHFR-218ENST00000540963 JAG1P78504 1218 aa32.86■■■□□ 2.85
CHFR-218ENST00000540963 TTC39AQ5SRH9 613 aa32.86■■■□□ 2.85
CHFR-218ENST00000540963 MAPKAPK5Q8IW41 473 aa32.86■■■□□ 2.85
CHFR-218ENST00000540963 TDHQ8IZJ6 230 aa32.86■■■□□ 2.85
CHFR-218ENST00000540963 PFASO15067 1338 aa32.85■■■□□ 2.85
CHFR-218ENST00000540963 COL6A1P12109 1028 aa32.85■■■□□ 2.85
CHFR-218ENST00000540963 RGS2P41220 211 aa32.85■■■□□ 2.85
CHFR-218ENST00000540963 MAGEA10P43363 369 aaPredicted RBP32.85■■■□□ 2.85
CHFR-218ENST00000540963 CCAR1Q8IX12 1150 aaKnown RBP32.85■■■□□ 2.85
CHFR-218ENST00000540963 A0A0C4DFX4 3053 aa32.85■■■□□ 2.85
CHFR-218ENST00000540963 MYO5AQ9Y4I1 1855 aaKnown RBP32.84■■■□□ 2.85
CHFR-218ENST00000540963 HLA-DOAP06340 250 aa32.84■■■□□ 2.85
CHFR-218ENST00000540963 CACNB2Q08289 660 aaPredicted RBP32.84■■■□□ 2.85
CHFR-218ENST00000540963 TNNI3KQ59H18 835 aa32.84■■■□□ 2.85
CHFR-218ENST00000540963 MORN1Q5T089 497 aa32.84■■■□□ 2.85
CHFR-218ENST00000540963 PALD1Q9ULE6 856 aa32.84■■■□□ 2.85
CHFR-218ENST00000540963 FPGT-TNNI3KV9GXZ4 949 aa32.84■■■□□ 2.85
CHFR-218ENST00000540963 SYN1P17600 705 aa32.83■■■□□ 2.85
CHFR-218ENST00000540963 USP17L2Q6R6M4 530 aa32.83■■■□□ 2.85
CHFR-218ENST00000540963 GPR142Q7Z601 462 aa32.83■■■□□ 2.85
CHFR-218ENST00000540963 ADGRA1Q86SQ6 560 aa32.83■■■□□ 2.85
CHFR-218ENST00000540963 CERS3Q8IU89 383 aa32.83■■■□□ 2.85
CHFR-218ENST00000540963 APBA2Q99767 749 aa32.83■■■□□ 2.85
CHFR-218ENST00000540963 SNRKQ9NRH2 765 aa32.83■■■□□ 2.85
CHFR-218ENST00000540963 CYP2E1P05181 493 aaPredicted RBP32.82■■■□□ 2.84
CHFR-218ENST00000540963 Q3C1V9 767 aa32.82■■■□□ 2.84
CHFR-218ENST00000540963 PLEKHH3Q7Z736 793 aa32.82■■■□□ 2.84
CHFR-218ENST00000540963 DEFB123Q8N688 67 aa32.82■■■□□ 2.84
CHFR-218ENST00000540963 EMILIN3Q9NT22 766 aa32.82■■■□□ 2.84
CHFR-218ENST00000540963 MYH1P12882 1939 aa32.81■■■□□ 2.84
CHFR-218ENST00000540963 GDF11O95390 407 aa32.81■■■□□ 2.84
CHFR-218ENST00000540963 POLA2Q14181 598 aa32.81■■■□□ 2.84
CHFR-218ENST00000540963 C12orf42Q96LP6 360 aa32.81■■■□□ 2.84
CHFR-218ENST00000540963 PORCNQ9H237 461 aa32.81■■■□□ 2.84
CHFR-218ENST00000540963 LHX8Q68G74 356 aa32.8■■■□□ 2.84
CHFR-218ENST00000540963 DBNDD2Q9BQY9 259 aa32.8■■■□□ 2.84
CHFR-218ENST00000540963 UBE2OQ9C0C9 1292 aaKnown RBP32.8■■■□□ 2.84
CHFR-218ENST00000540963 STXBP5LQ9Y2K9 1186 aa32.8■■■□□ 2.84
CHFR-218ENST00000540963 RABGAP1Q9Y3P9 1069 aa32.8■■■□□ 2.84
CHFR-218ENST00000540963 PEX10O60683 326 aa32.79■■■□□ 2.84
CHFR-218ENST00000540963 GLRX3O76003 335 aaKnown RBP32.79■■■□□ 2.84
CHFR-218ENST00000540963 FRMPD3Q5JV73 1810 aa32.79■■■□□ 2.84
CHFR-218ENST00000540963 CCNA1P78396 465 aa32.78■■■□□ 2.84
CHFR-218ENST00000540963 SHROOM1Q2M3G4 852 aaPredicted RBP32.78■■■□□ 2.84
CHFR-218ENST00000540963 TMED8Q6PL24 325 aaPredicted RBP32.78■■■□□ 2.84
CHFR-218ENST00000540963 SSH3Q8TE77 659 aa32.78■■■□□ 2.84
CHFR-218ENST00000540963 PAGR1Q9BTK6 254 aa32.78■■■□□ 2.84
CHFR-218ENST00000540963 MAP2K5Q13163 448 aa32.77■■■□□ 2.84
CHFR-218ENST00000540963 TATDN1Q6P1N9 297 aa32.77■■■□□ 2.84
CHFR-218ENST00000540963 POTEEQ6S8J3 1075 aa32.77■■■□□ 2.84
CHFR-218ENST00000540963 USP17L15C9J2P7 530 aa32.76■■■□□ 2.83
CHFR-218ENST00000540963 USP17L13C9JLJ4 530 aa32.76■■■□□ 2.83
CHFR-218ENST00000540963 USP17L11C9JVI0 530 aa32.76■■■□□ 2.83
CHFR-218ENST00000540963 USP17L18D6R9N7 530 aa32.76■■■□□ 2.83
CHFR-218ENST00000540963 USP17L22D6RA61 530 aa32.76■■■□□ 2.83
CHFR-218ENST00000540963 USP17L17D6RBQ6 530 aa32.76■■■□□ 2.83
CHFR-218ENST00000540963 USP17L19D6RCP7 530 aa32.76■■■□□ 2.83
CHFR-218ENST00000540963 USP17L20D6RJB6 530 aa32.76■■■□□ 2.83
CHFR-218ENST00000540963 CCND3P30281 292 aaPredicted RBP32.76■■■□□ 2.83
CHFR-218ENST00000540963 USP17L24Q0WX57 530 aa32.76■■■□□ 2.83
CHFR-218ENST00000540963 CCL14Q16627 93 aa32.76■■■□□ 2.83
CHFR-218ENST00000540963 EHD4Q9H223 541 aa32.76■■■□□ 2.83
CHFR-218ENST00000540963 SAP30BPQ9UHR5 308 aaKnown RBP32.76■■■□□ 2.83
CHFR-218ENST00000540963 GH2P01242 217 aa32.75■■■□□ 2.83
CHFR-218ENST00000540963 ZAP70P43403 619 aa32.75■■■□□ 2.83
CHFR-218ENST00000540963 USP14P54578 494 aa32.75■■■□□ 2.83
CHFR-218ENST00000540963 OS9Q13438 667 aaPredicted RBP32.75■■■□□ 2.83
CHFR-218ENST00000540963 MTMR10Q9NXD2 777 aa32.75■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms