RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 USP26Q9BXU7 913 aa7.07□□□□□ -1.28
PRKDC-209ENST00000540819 OSBPL1AQ9BXW6 950 aa7.07□□□□□ -1.28
PRKDC-209ENST00000540819 KBTBD4Q9NVX7 518 aa7.07□□□□□ -1.28
PRKDC-209ENST00000540819 PIM2Q9P1W9 311 aa7.07□□□□□ -1.28
PRKDC-209ENST00000540819 MSRB2Q9Y3D2 182 aa7.07□□□□□ -1.28
PRKDC-209ENST00000540819 ADAMTS4O75173 837 aa7.06□□□□□ -1.28
PRKDC-209ENST00000540819 IFRD2Q12894 506 aaPredicted RBP7.06□□□□□ -1.28
PRKDC-209ENST00000540819 PWP1Q13610 501 aa7.06□□□□□ -1.28
PRKDC-209ENST00000540819 FAM50AQ14320 339 aaKnown RBP7.06□□□□□ -1.28
PRKDC-209ENST00000540819 MAP9Q49MG5 647 aa7.06□□□□□ -1.28
PRKDC-209ENST00000540819 HGSNATQ68CP4 663 aa7.06□□□□□ -1.28
PRKDC-209ENST00000540819 KRTAP19-1Q8IUB9 90 aa7.06□□□□□ -1.28
PRKDC-209ENST00000540819 DNAJC7Q99615 494 aa7.06□□□□□ -1.28
PRKDC-209ENST00000540819 ANGEL1Q9UNK9 670 aaKnown RBP7.06□□□□□ -1.28
PRKDC-209ENST00000540819 FAM95CA0A1B0GW59 222 aa7.05□□□□□ -1.28
PRKDC-209ENST00000540819 CAND2O75155 1236 aa7.05□□□□□ -1.28
PRKDC-209ENST00000540819 USP17L7P0C7H9 530 aa7.05□□□□□ -1.28
PRKDC-209ENST00000540819 GNALP38405 381 aa7.05□□□□□ -1.28
PRKDC-209ENST00000540819 HDAC1Q13547 482 aaPredicted RBP7.05□□□□□ -1.28
PRKDC-209ENST00000540819 SGO2Q562F6 1265 aa7.05□□□□□ -1.28
PRKDC-209ENST00000540819 EXOSC6Q5RKV6 272 aaKnown RBP7.05□□□□□ -1.28
PRKDC-209ENST00000540819 PAOXQ6QHF9 649 aa7.05□□□□□ -1.28
PRKDC-209ENST00000540819 C11orf96Q7Z7L8 435 aa7.05□□□□□ -1.28
PRKDC-209ENST00000540819 SMG8Q8ND04 991 aaKnown RBP7.05□□□□□ -1.28
PRKDC-209ENST00000540819 APBA2Q99767 749 aa7.05□□□□□ -1.28
PRKDC-209ENST00000540819 ZKSCAN3Q9BRR0 538 aa7.05□□□□□ -1.28
PRKDC-209ENST00000540819 CHRDQ9H2X0 955 aa7.05□□□□□ -1.28
PRKDC-209ENST00000540819 GINM1Q9NU53 330 aa7.05□□□□□ -1.28
PRKDC-209ENST00000540819 GNL3LQ9NVN8 582 aaKnown RBP7.05□□□□□ -1.28
PRKDC-209ENST00000540819 CCDC85CA6NKD9 419 aa7.04□□□□□ -1.28
PRKDC-209ENST00000540819 EREGO14944 169 aa7.04□□□□□ -1.28
PRKDC-209ENST00000540819 TNNI3KQ59H18 835 aa7.04□□□□□ -1.28
PRKDC-209ENST00000540819 VN1R5Q7Z5H4 357 aa7.04□□□□□ -1.28
PRKDC-209ENST00000540819 CPLX3Q8WVH0 158 aa7.04□□□□□ -1.28
PRKDC-209ENST00000540819 SCYL1Q96KG9 808 aa7.04□□□□□ -1.28
PRKDC-209ENST00000540819 YIPF2Q9BWQ6 316 aa7.04□□□□□ -1.28
PRKDC-209ENST00000540819 TMPRSS13Q9BYE2 586 aa7.04□□□□□ -1.28
PRKDC-209ENST00000540819 SUGCTQ9HAC7 445 aa7.04□□□□□ -1.28
PRKDC-209ENST00000540819 ADAMTS1Q9UHI8 967 aa7.04□□□□□ -1.28
PRKDC-209ENST00000540819 PNMA2Q9UL42 364 aa7.04□□□□□ -1.28
PRKDC-209ENST00000540819 TNFRSF21O75509 655 aa7.03□□□□□ -1.28
PRKDC-209ENST00000540819 WDHD1O75717 1129 aaPredicted RBP7.03□□□□□ -1.28
PRKDC-209ENST00000540819 HOXA10P31260 410 aaPredicted RBP7.03□□□□□ -1.28
PRKDC-209ENST00000540819 GSTM4Q03013 218 aa7.03□□□□□ -1.28
PRKDC-209ENST00000540819 SAFB2Q14151 953 aaKnown RBP eCLIP7.03□□□□□ -1.28
PRKDC-209ENST00000540819 BRDTQ58F21 947 aaPredicted RBP7.03□□□□□ -1.28
PRKDC-209ENST00000540819 CLEC4GQ6UXB4 293 aa7.03□□□□□ -1.28
PRKDC-209ENST00000540819 RELL1Q8IUW5 271 aa7.03□□□□□ -1.28
PRKDC-209ENST00000540819 SYNPOQ8N3V7 929 aa7.03□□□□□ -1.28
PRKDC-209ENST00000540819 SNX29Q8TEQ0 813 aa7.03□□□□□ -1.28
PRKDC-209ENST00000540819 CCDC74AQ96AQ1 378 aa7.03□□□□□ -1.28
PRKDC-209ENST00000540819 SOX17Q9H6I2 414 aaPredicted RBP7.03□□□□□ -1.28
PRKDC-209ENST00000540819 ATP8A1Q9Y2Q0 1164 aa7.03□□□□□ -1.28
PRKDC-209ENST00000540819 LOC100289279A0A1B0GTE1 492 aa7.02□□□□□ -1.29
PRKDC-209ENST00000540819 F13BP05160 661 aa7.02□□□□□ -1.29
PRKDC-209ENST00000540819 FOSL1P15407 271 aa7.02□□□□□ -1.29
PRKDC-209ENST00000540819 EPHB1P54762 984 aa7.02□□□□□ -1.29
PRKDC-209ENST00000540819 SQSTM1Q13501 440 aa7.02□□□□□ -1.29
PRKDC-209ENST00000540819 RASGRF1Q13972 1273 aa7.02□□□□□ -1.29
PRKDC-209ENST00000540819 HLTFQ14527 1009 aaKnown RBP eCLIP7.02□□□□□ -1.29
PRKDC-209ENST00000540819 TCEA2Q15560 299 aa7.02□□□□□ -1.29
PRKDC-209ENST00000540819 VPS72Q15906 364 aa7.02□□□□□ -1.29
PRKDC-209ENST00000540819 NFE2Q16621 373 aaPredicted RBP7.02□□□□□ -1.29
PRKDC-209ENST00000540819 CPSF6Q16630 551 aaKnown RBP eCLIP7.02□□□□□ -1.29
PRKDC-209ENST00000540819 PI16Q6UXB8 463 aa7.02□□□□□ -1.29
PRKDC-209ENST00000540819 WDR75Q8IWA0 830 aaKnown RBP7.02□□□□□ -1.29
PRKDC-209ENST00000540819 TMTC2Q8N394 836 aa7.02□□□□□ -1.29
PRKDC-209ENST00000540819 SAMD3Q8N6K7 520 aa7.02□□□□□ -1.29
PRKDC-209ENST00000540819 TSR2Q969E8 191 aaKnown RBP7.02□□□□□ -1.29
PRKDC-209ENST00000540819 EAF1Q96JC9 268 aaPredicted RBP7.02□□□□□ -1.29
PRKDC-209ENST00000540819 METTL22Q9BUU2 404 aaPredicted RBP7.02□□□□□ -1.29
PRKDC-209ENST00000540819 NT5C1AQ9BXI3 368 aa7.02□□□□□ -1.29
PRKDC-209ENST00000540819 PLAAQ9Y263 795 aa7.02□□□□□ -1.29
PRKDC-209ENST00000540819 ALG1L2C9J202 215 aa7.01□□□□□ -1.29
PRKDC-209ENST00000540819 PDPK1O15530 556 aa7.01□□□□□ -1.29
PRKDC-209ENST00000540819 KRT18P05783 430 aaKnown RBP7.01□□□□□ -1.29
PRKDC-209ENST00000540819 ESRRAP11474 423 aaPredicted RBP7.01□□□□□ -1.29
PRKDC-209ENST00000540819 DRD2P14416 443 aa7.01□□□□□ -1.29
PRKDC-209ENST00000540819 PMLP29590 882 aa7.01□□□□□ -1.29
PRKDC-209ENST00000540819 EIF4A3P38919 411 aaKnown RBP7.01□□□□□ -1.29
PRKDC-209ENST00000540819 CDKN1CP49918 316 aaPredicted RBP7.01□□□□□ -1.29
PRKDC-209ENST00000540819 EVA1CP58658 441 aa7.01□□□□□ -1.29
PRKDC-209ENST00000540819 TKFCQ3LXA3 575 aa7.01□□□□□ -1.29
PRKDC-209ENST00000540819 C2orf27AQ580R0 203 aa7.01□□□□□ -1.29
PRKDC-209ENST00000540819 EPS8L3Q8TE67 593 aaKnown RBP7.01□□□□□ -1.29
PRKDC-209ENST00000540819 FBLIM1Q8WUP2 373 aa7.01□□□□□ -1.29
PRKDC-209ENST00000540819 ANAPC16Q96DE5 110 aa7.01□□□□□ -1.29
PRKDC-209ENST00000540819 IL17RAQ96F46 866 aa7.01□□□□□ -1.29
PRKDC-209ENST00000540819 PLCD4Q9BRC7 762 aa7.01□□□□□ -1.29
PRKDC-209ENST00000540819 ADGRE2Q9UHX3 823 aa7.01□□□□□ -1.29
PRKDC-209ENST00000540819 CCDC189A1A4V9 331 aa7□□□□□ -1.29
PRKDC-209ENST00000540819 CYP26A1O43174 497 aa7□□□□□ -1.29
PRKDC-209ENST00000540819 TSPAN6O43657 245 aa7□□□□□ -1.29
PRKDC-209ENST00000540819 TIAF1O95411 115 aa7□□□□□ -1.29
PRKDC-209ENST00000540819 LDHAP00338 332 aaKnown RBP7□□□□□ -1.29
PRKDC-209ENST00000540819 SOX4Q06945 474 aaPredicted RBP7□□□□□ -1.29
PRKDC-209ENST00000540819 THAP3Q8WTV1 239 aaPredicted RBP7□□□□□ -1.29
PRKDC-209ENST00000540819 TBC1D32Q96NH3 1257 aa7□□□□□ -1.29
PRKDC-209ENST00000540819 SRRTQ9BXP5 876 aaKnown RBP7□□□□□ -1.29
PRKDC-209ENST00000540819 BHLHE41Q9C0J9 482 aaPredicted RBP7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms