RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 PPP2R5BQ15173 497 aa11.19□□□□□ -0.62
CLIP1-212ENST00000540304 DIXDC1Q155Q3 683 aa11.19□□□□□ -0.62
CLIP1-212ENST00000540304 ENAHQ8N8S7 591 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-212ENST00000540304 SH3RF3Q8TEJ3 882 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-212ENST00000540304 TBC1D22AQ8WUA7 517 aa11.19□□□□□ -0.62
CLIP1-212ENST00000540304 WASF1Q92558 559 aa11.19□□□□□ -0.62
CLIP1-212ENST00000540304 SLC26A6Q9BXS9 759 aa11.19□□□□□ -0.62
CLIP1-212ENST00000540304 PDE4BQ07343 736 aa11.18□□□□□ -0.62
CLIP1-212ENST00000540304 CCDC173Q0VFZ6 552 aa11.18□□□□□ -0.62
CLIP1-212ENST00000540304 TRIM29Q14134 588 aa11.18□□□□□ -0.62
CLIP1-212ENST00000540304 TRIM22Q8IYM9 498 aa11.18□□□□□ -0.62
CLIP1-212ENST00000540304 FANCBQ8NB91 859 aa11.18□□□□□ -0.62
CLIP1-212ENST00000540304 AIFM3Q96NN9 605 aa11.18□□□□□ -0.62
CLIP1-212ENST00000540304 NUP62CLQ9H1M0 184 aa11.18□□□□□ -0.62
CLIP1-212ENST00000540304 DDX19AQ9NUU7 478 aaKnown RBP11.18□□□□□ -0.62
CLIP1-212ENST00000540304 MCM9Q9NXL9 1143 aa11.18□□□□□ -0.62
CLIP1-212ENST00000540304 RTEL1Q9NZ71 1219 aa11.18□□□□□ -0.62
CLIP1-212ENST00000540304 MKRN1Q9UHC7 482 aaKnown RBP11.18□□□□□ -0.62
CLIP1-212ENST00000540304 CYP2D6P10635 497 aa11.18□□□□□ -0.62
CLIP1-212ENST00000540304 NT5C2P49902 561 aa11.18□□□□□ -0.62
CLIP1-212ENST00000540304 EVX2Q03828 476 aa11.18□□□□□ -0.62
CLIP1-212ENST00000540304 SLC4A8Q2Y0W8 1093 aa11.18□□□□□ -0.62
CLIP1-212ENST00000540304 AXDND1Q5T1B0 1012 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-212ENST00000540304 IFIT1BQ5T764 474 aaKnown RBP11.18□□□□□ -0.62
CLIP1-212ENST00000540304 KRT40Q6A162 431 aa11.18□□□□□ -0.62
CLIP1-212ENST00000540304 NUP133Q8WUM0 1156 aa11.18□□□□□ -0.62
CLIP1-212ENST00000540304 MASTLQ96GX5 879 aa11.18□□□□□ -0.62
CLIP1-212ENST00000540304 RTFDC1Q9BY42 306 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-212ENST00000540304 GTPBP4Q9BZE4 634 aaKnown RBP11.18□□□□□ -0.62
CLIP1-212ENST00000540304 MYH6P13533 1939 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 FAM205AQ6ZU69 1335 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 ROBO3Q96MS0 1386 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 KIF28PB7ZC32 967 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 USP17L8P0C7I0 530 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 MFSD14BQ5SR56 506 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 C12orf60Q5U649 245 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 MYSM1Q5VVJ2 828 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 CATIPQ7Z7H3 387 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 SLF2Q8IX21 1173 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 AMOTL1Q8IY63 956 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 COA1Q9GZY4 146 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 DACT1Q9NYF0 836 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 QSER1Q2KHR3 1735 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 DDX60LQ5H9U9 1706 aaKnown RBP11.17□□□□□ -0.62
CLIP1-212ENST00000540304 POLR3DP05423 398 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-212ENST00000540304 CALM1P0DP23 149 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 CALM2P0DP24 149 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 CALM3P0DP25 149 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 MSL1Q68DK7 614 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 NBPF11Q86T75 865 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 PPP1R9BQ96SB3 815 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 FUCA2Q9BTY2 467 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 POLR3EQ9NVU0 708 aa11.17□□□□□ -0.62
CLIP1-212ENST00000540304 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-212ENST00000540304 GPR75-ASB3A0A0A6YYF3 556 aa11.16□□□□□ -0.62
CLIP1-212ENST00000540304 UBE2Q2LH0YL09 131 aa11.16□□□□□ -0.62
CLIP1-212ENST00000540304 YEATS4O95619 227 aa11.16□□□□□ -0.62
CLIP1-212ENST00000540304 PLCG2P16885 1265 aa11.16□□□□□ -0.62
CLIP1-212ENST00000540304 BTDP43251 543 aa11.16□□□□□ -0.62
CLIP1-212ENST00000540304 MAP3K11Q16584 847 aa11.16□□□□□ -0.62
CLIP1-212ENST00000540304 TAF3Q5VWG9 929 aa11.16□□□□□ -0.62
CLIP1-212ENST00000540304 CRACR2BQ8N4Y2 399 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-212ENST00000540304 MPNDQ8N594 471 aa11.16□□□□□ -0.62
CLIP1-212ENST00000540304 TMX4Q9H1E5 349 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-212ENST00000540304 FOCADQ5VW36 1801 aa11.16□□□□□ -0.62
CLIP1-212ENST00000540304 RIMBP2O15034 1052 aa11.16□□□□□ -0.62
CLIP1-212ENST00000540304 DDAH1O94760 285 aa11.16□□□□□ -0.62
CLIP1-212ENST00000540304 DEXIO95424 95 aa11.16□□□□□ -0.62
CLIP1-212ENST00000540304 DPP8Q6V1X1 898 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-212ENST00000540304 FAM163AQ96GL9 167 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-212ENST00000540304 ZC3H12CQ9C0D7 883 aaKnown RBP11.16□□□□□ -0.62
CLIP1-212ENST00000540304 TNMDQ9H2S6 317 aa11.16□□□□□ -0.62
CLIP1-212ENST00000540304 CLSTN2Q9H4D0 955 aa11.16□□□□□ -0.62
CLIP1-212ENST00000540304 RBM28Q9NW13 759 aaKnown RBP11.16□□□□□ -0.62
CLIP1-212ENST00000540304 RGS17Q9UGC6 210 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-212ENST00000540304 TSPY2A6NKD2 308 aa11.15□□□□□ -0.62
CLIP1-212ENST00000540304 NR1I2O75469 434 aa11.15□□□□□ -0.62
CLIP1-212ENST00000540304 ME1P48163 572 aa11.15□□□□□ -0.62
CLIP1-212ENST00000540304 GNL2Q13823 731 aaKnown RBP11.15□□□□□ -0.62
CLIP1-212ENST00000540304 STK38Q15208 465 aa11.15□□□□□ -0.62
CLIP1-212ENST00000540304 LINC00301Q8NCQ3 95 aa11.15□□□□□ -0.62
CLIP1-212ENST00000540304 KCNG4Q8TDN1 519 aa11.15□□□□□ -0.62
CLIP1-212ENST00000540304 TGFBRAP1Q8WUH2 860 aa11.15□□□□□ -0.62
CLIP1-212ENST00000540304 CLIC4Q9Y696 253 aa11.15□□□□□ -0.62
CLIP1-212ENST00000540304 GAKO14976 1311 aa11.15□□□□□ -0.62
CLIP1-212ENST00000540304 U2AF2P26368 475 aaKnown RBP eCLIP11.15□□□□□ -0.631e-8■■■■□ 25.7
CLIP1-212ENST00000540304 GTF2IP78347 998 aa11.15□□□□□ -0.63
CLIP1-212ENST00000540304 FAM47AQ5JRC9 791 aa11.15□□□□□ -0.63
CLIP1-212ENST00000540304 CCAR1Q8IX12 1150 aaKnown RBP11.15□□□□□ -0.63
CLIP1-212ENST00000540304 RNF26Q9BY78 433 aaPredicted RBP11.15□□□□□ -0.63
CLIP1-212ENST00000540304 SUGT1Q9Y2Z0 365 aa11.15□□□□□ -0.63
CLIP1-212ENST00000540304 UTRNP46939 3433 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 CCDC192P0DO97 292 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 GUCY1A2P33402 732 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 TROAPQ12815 778 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 CAMK4Q16566 473 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 ANO1Q5XXA6 986 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 POTEAQ6S8J7 498 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 OLFM4Q6UX06 510 aa11.14□□□□□ -0.63
CLIP1-212ENST00000540304 CCDC73Q6ZRK6 1079 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms