RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 WTAPQ15007 396 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 MUM1L1Q5H9M0 696 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 PLCD3Q8N3E9 789 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 TRIML1Q8N9V2 468 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 PNKPQ96T60 521 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 NUP88Q99567 741 aaPredicted RBP12.79□□□□□ -0.36
SYNE1-237ENST00000539504 MYH15Q9Y2K3 1946 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 MBD4O95243 580 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 ITGA6P23229 1130 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 TCIRG1Q13488 830 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 KIF6Q6ZMV9 814 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 GOLGA6L1Q8N7Z2 621 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 OXER1Q8TDS5 423 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 FAN1Q9Y2M0 1017 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 A0A1B0GTH6 734 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 MYO1CO00159 1063 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 N4BP1O75113 896 aaKnown RBP12.78□□□□□ -0.36
SYNE1-237ENST00000539504 SPATA1Q5VX52 437 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 ARMT1Q9H993 441 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 SEC31BQ9NQW1 1179 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 hCG_1642624A0A1W2PR95 340 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 IFNAR1P17181 557 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 ERCC5P28715 1186 aaPredicted RBP12.78□□□□□ -0.36
SYNE1-237ENST00000539504 ACTN2P35609 894 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 PHKA1P46020 1223 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 EPSTI1Q96J88 318 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 MED15Q96RN5 788 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 RSPH14Q9UHP6 348 aa12.78□□□□□ -0.36
SYNE1-237ENST00000539504 C5P01031 1676 aa12.77□□□□□ -0.36
SYNE1-237ENST00000539504 MAGEB6Q8N7X4 407 aa12.77□□□□□ -0.36
SYNE1-237ENST00000539504 NAPGQ99747 312 aaPredicted RBP12.77□□□□□ -0.36
SYNE1-237ENST00000539504 NAA15Q9BXJ9 866 aaKnown RBP12.77□□□□□ -0.36
SYNE1-237ENST00000539504 VPS16Q9H269 839 aa12.77□□□□□ -0.36
SYNE1-237ENST00000539504 ANKZF1Q9H8Y5 726 aa12.77□□□□□ -0.36
SYNE1-237ENST00000539504 LCMT1Q9UIC8 334 aa12.77□□□□□ -0.36
SYNE1-237ENST00000539504 ANKRD18BA2A2Z9 1011 aa12.77□□□□□ -0.37
SYNE1-237ENST00000539504 TRIM75PA6NK02 468 aa12.77□□□□□ -0.37
SYNE1-237ENST00000539504 BEND6Q5SZJ8 279 aaPredicted RBP12.77□□□□□ -0.37
SYNE1-237ENST00000539504 CNGA4Q8IV77 575 aa12.77□□□□□ -0.37
SYNE1-237ENST00000539504 IFNL3Q8IZI9 196 aa12.77□□□□□ -0.37
SYNE1-237ENST00000539504 CTAGE1Q96RT6 745 aa12.77□□□□□ -0.37
SYNE1-237ENST00000539504 MFAP3LO75121 409 aa12.77□□□□□ -0.37
SYNE1-237ENST00000539504 UBE3CQ15386 1083 aa12.77□□□□□ -0.37
SYNE1-237ENST00000539504 TOM1L2Q6ZVM7 507 aa12.77□□□□□ -0.37
SYNE1-237ENST00000539504 SGMS1Q86VZ5 419 aa12.77□□□□□ -0.37
SYNE1-237ENST00000539504 SLF1Q9BQI6 1058 aa12.77□□□□□ -0.37
SYNE1-237ENST00000539504 GBP3Q9H0R5 595 aa12.77□□□□□ -0.37
SYNE1-237ENST00000539504 GREM2Q9H772 168 aa12.77□□□□□ -0.37
SYNE1-237ENST00000539504 CTNND2Q9UQB3 1225 aa12.77□□□□□ -0.37
SYNE1-237ENST00000539504 SRPRBQ9Y5M8 271 aaKnown RBP12.77□□□□□ -0.37
SYNE1-237ENST00000539504 ACTN4O43707 911 aaKnown RBP12.76□□□□□ -0.37
SYNE1-237ENST00000539504 DEXIO95424 95 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 SARSP49591 514 aaKnown RBP12.76□□□□□ -0.37
SYNE1-237ENST00000539504 ANKRD20A12PQ8NF67 263 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 STRBPQ96SI9 672 aaKnown RBP12.76□□□□□ -0.37
SYNE1-237ENST00000539504 UBAC1Q9BSL1 405 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 ACBD3Q9H3P7 528 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 TTF2Q9UNY4 1162 aaKnown RBP12.76□□□□□ -0.37
SYNE1-237ENST00000539504 AFDNP55196 1824 aaKnown RBP12.76□□□□□ -0.37
SYNE1-237ENST00000539504 CCDC196A0A1B0GTZ2 297 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 LIFRP42702 1097 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 VSNL1P62760 191 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 RGS22Q8NE09 1264 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 KRT23Q9C075 422 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 FOXP1Q9H334 677 aaPredicted RBP12.76□□□□□ -0.37
SYNE1-237ENST00000539504 FBXO3Q9UK99 471 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 GUCA1BQ9UMX6 200 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 RRP15Q9Y3B9 282 aaKnown RBP12.76□□□□□ -0.37
SYNE1-237ENST00000539504 FAM205CA6NFA0 338 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 MAP2K7O14733 419 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 XBP1P17861 261 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 CDC25AP30304 524 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 MAP3K12Q12852 859 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 AKNAD1Q5T1N1 836 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 RRAGBQ5VZM2 374 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 ZCRB1Q8TBF4 217 aaKnown RBP12.76□□□□□ -0.37
SYNE1-237ENST00000539504 NACAP1Q9BZK3 213 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 VPS54Q9P1Q0 977 aa12.76□□□□□ -0.37
SYNE1-237ENST00000539504 USP54Q70EL1 1684 aa12.75□□□□□ -0.37
SYNE1-237ENST00000539504 MINDY4BA8MYZ0 360 aa12.75□□□□□ -0.37
SYNE1-237ENST00000539504 PATL2C9JE40 543 aaKnown RBP12.75□□□□□ -0.37
SYNE1-237ENST00000539504 PRKAB2O43741 272 aa12.75□□□□□ -0.37
SYNE1-237ENST00000539504 CD44P16070 742 aaKnown RBP12.75□□□□□ -0.37
SYNE1-237ENST00000539504 FXR1P51114 621 aaKnown RBP eCLIP12.75□□□□□ -0.37
SYNE1-237ENST00000539504 ISCA1Q9BUE6 129 aa12.75□□□□□ -0.37
SYNE1-237ENST00000539504 BLZF1Q9H2G9 400 aa12.75□□□□□ -0.37
SYNE1-237ENST00000539504 CNNM2Q9H8M5 875 aa12.75□□□□□ -0.37
SYNE1-237ENST00000539504 PIP4K2BP78356 416 aa12.75□□□□□ -0.37
SYNE1-237ENST00000539504 CASP8Q14790 479 aa12.75□□□□□ -0.37
SYNE1-237ENST00000539504 ZNF174Q15697 407 aa12.75□□□□□ -0.37
SYNE1-237ENST00000539504 NT5DC1Q5TFE4 455 aa12.75□□□□□ -0.37
SYNE1-237ENST00000539504 TAB2Q9NYJ8 693 aa12.75□□□□□ -0.37
SYNE1-237ENST00000539504 ADD3Q9UEY8 706 aaKnown RBP12.75□□□□□ -0.37
SYNE1-237ENST00000539504 PCCAP05165 728 aaPredicted RBP12.75□□□□□ -0.37
SYNE1-237ENST00000539504 IVLP07476 585 aa12.75□□□□□ -0.37
SYNE1-237ENST00000539504 SYMPKQ92797 1274 aaKnown RBP12.75□□□□□ -0.37
SYNE1-237ENST00000539504 STK36Q9NRP7 1315 aa12.75□□□□□ -0.37
SYNE1-237ENST00000539504 MAPK8IP1Q9UQF2 711 aa12.75□□□□□ -0.37
SYNE1-237ENST00000539504 SLC4A4Q9Y6R1 1079 aa12.75□□□□□ -0.37
SYNE1-237ENST00000539504 ABL1P00519 1130 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms