RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 SWAP70Q9UH65 585 aa12.56□□□□□ -0.4
LEMD3-202ENST00000539442 SERPINB13Q9UIV8 391 aa12.56□□□□□ -0.4
LEMD3-202ENST00000539442 MYH1P12882 1939 aa12.55□□□□□ -0.4
LEMD3-202ENST00000539442 GLTPD2A6NH11 291 aa12.55□□□□□ -0.4
LEMD3-202ENST00000539442 SMIM22K7EJ46 135 aa12.55□□□□□ -0.4
LEMD3-202ENST00000539442 KDM4AO75164 1064 aa12.55□□□□□ -0.4
LEMD3-202ENST00000539442 FGD1P98174 961 aa12.55□□□□□ -0.4
LEMD3-202ENST00000539442 TCP10Q12799 353 aa12.55□□□□□ -0.4
LEMD3-202ENST00000539442 COL9A3Q14050 684 aaPredicted RBP12.55□□□□□ -0.4
LEMD3-202ENST00000539442 SART3Q15020 963 aaKnown RBP12.55□□□□□ -0.4
LEMD3-202ENST00000539442 RRP12Q5JTH9 1297 aaKnown RBP12.55□□□□□ -0.4
LEMD3-202ENST00000539442 RBM26Q5T8P6 1007 aaKnown RBP12.55□□□□□ -0.4
LEMD3-202ENST00000539442 Q6ZUG5 572 aa12.55□□□□□ -0.4
LEMD3-202ENST00000539442 SAMD7Q7Z3H4 446 aa12.55□□□□□ -0.4
LEMD3-202ENST00000539442 ZSCAN31Q96LW9 406 aaPredicted RBP12.55□□□□□ -0.4
LEMD3-202ENST00000539442 MKNK2Q9HBH9 465 aa12.55□□□□□ -0.4
LEMD3-202ENST00000539442 VEZTQ9HBM0 779 aa12.55□□□□□ -0.4
LEMD3-202ENST00000539442 ZSWIM5Q9P217 1185 aa12.55□□□□□ -0.4
LEMD3-202ENST00000539442 LIMCH1Q9UPQ0 1083 aa12.55□□□□□ -0.4
LEMD3-202ENST00000539442 DDTLA6NHG4 134 aaPredicted RBP12.54□□□□□ -0.4
LEMD3-202ENST00000539442 TCP10L2B9ZVM9 353 aa12.54□□□□□ -0.4
LEMD3-202ENST00000539442 EGFRP00533 1210 aa12.54□□□□□ -0.4
LEMD3-202ENST00000539442 EPS15P42566 896 aa12.54□□□□□ -0.4
LEMD3-202ENST00000539442 CDK8P49336 464 aa12.54□□□□□ -0.4
LEMD3-202ENST00000539442 TOB2Q14106 344 aaPredicted RBP12.54□□□□□ -0.4
LEMD3-202ENST00000539442 SLC4A8Q2Y0W8 1093 aa12.54□□□□□ -0.4
LEMD3-202ENST00000539442 CYB5R4Q7L1T6 521 aa12.54□□□□□ -0.4
LEMD3-202ENST00000539442 SH3BP5LQ7L8J4 393 aa12.54□□□□□ -0.4
LEMD3-202ENST00000539442 METTL16Q86W50 562 aaKnown RBP12.54□□□□□ -0.4
LEMD3-202ENST00000539442 IQCA1Q86XH1 822 aa12.54□□□□□ -0.4
LEMD3-202ENST00000539442 APOBEC3FQ8IUX4 373 aaKnown RBP12.54□□□□□ -0.4
LEMD3-202ENST00000539442 FOXP4Q8IVH2 680 aaPredicted RBP12.54□□□□□ -0.4
LEMD3-202ENST00000539442 ZSCAN29Q8IWY8 852 aaPredicted RBP12.54□□□□□ -0.4
LEMD3-202ENST00000539442 ZFPM1Q8IX07 1006 aa12.54□□□□□ -0.4
LEMD3-202ENST00000539442 STK11IPQ8N1F8 1099 aa12.54□□□□□ -0.4
LEMD3-202ENST00000539442 DYNLL2Q96FJ2 89 aa12.54□□□□□ -0.4
LEMD3-202ENST00000539442 TCEANC2Q96MN5 208 aa12.54□□□□□ -0.4
LEMD3-202ENST00000539442 INCENPQ9NQS7 918 aa12.54□□□□□ -0.4
LEMD3-202ENST00000539442 SH2B1Q9NRF2 756 aaPredicted RBP12.54□□□□□ -0.4
LEMD3-202ENST00000539442 CNTNAP1P78357 1384 aa12.54□□□□□ -0.4
LEMD3-202ENST00000539442 ERICH2A1L162 156 aa12.53□□□□□ -0.4
LEMD3-202ENST00000539442 IQCA1LA6NCM1 817 aa12.53□□□□□ -0.4
LEMD3-202ENST00000539442 TSPY2A6NKD2 308 aa12.53□□□□□ -0.4
LEMD3-202ENST00000539442 SH2B2O14492 632 aaPredicted RBP12.53□□□□□ -0.4
LEMD3-202ENST00000539442 RANBP6O60518 1105 aaKnown RBP12.53□□□□□ -0.4
LEMD3-202ENST00000539442 PRDM1O75626 825 aa12.53□□□□□ -0.4
LEMD3-202ENST00000539442 LIFRP42702 1097 aa12.53□□□□□ -0.4
LEMD3-202ENST00000539442 EVCP57679 992 aa12.53□□□□□ -0.4
LEMD3-202ENST00000539442 CCDC178Q5BJE1 867 aa12.53□□□□□ -0.4
LEMD3-202ENST00000539442 ZNF444Q8N0Y2 327 aaPredicted RBP12.53□□□□□ -0.4
LEMD3-202ENST00000539442 TMTC2Q8N394 836 aa12.53□□□□□ -0.4
LEMD3-202ENST00000539442 CRACR2BQ8N4Y2 399 aaPredicted RBP12.53□□□□□ -0.4
LEMD3-202ENST00000539442 TRPM4Q8TD43 1214 aa12.53□□□□□ -0.4
LEMD3-202ENST00000539442 BRF1Q92994 677 aa12.53□□□□□ -0.4
LEMD3-202ENST00000539442 TMX3Q96JJ7 454 aa12.53□□□□□ -0.4
LEMD3-202ENST00000539442 UBAC1Q9BSL1 405 aa12.53□□□□□ -0.4
LEMD3-202ENST00000539442 TRIM34Q9BYJ4 488 aa12.53□□□□□ -0.4
LEMD3-202ENST00000539442 HERC5Q9UII4 1024 aaKnown RBP12.53□□□□□ -0.4
LEMD3-202ENST00000539442 HACL1Q9UJ83 578 aa12.53□□□□□ -0.4
LEMD3-202ENST00000539442 ANGEL1Q9UNK9 670 aaKnown RBP12.53□□□□□ -0.4
LEMD3-202ENST00000539442 PPP2R3BQ9Y5P8 575 aa12.53□□□□□ -0.4
LEMD3-202ENST00000539442 PITPNM2Q9BZ72 1349 aa12.53□□□□□ -0.4
LEMD3-202ENST00000539442 IFIT3O14879 490 aaKnown RBP12.52□□□□□ -0.41
LEMD3-202ENST00000539442 RASA1P20936 1047 aa12.52□□□□□ -0.41
LEMD3-202ENST00000539442 TMEM67Q5HYA8 995 aa12.52□□□□□ -0.41
LEMD3-202ENST00000539442 USP50Q70EL3 339 aaPredicted RBP12.52□□□□□ -0.41
LEMD3-202ENST00000539442 CHST3Q7LGC8 479 aa12.52□□□□□ -0.41
LEMD3-202ENST00000539442 SGMS1Q86VZ5 419 aa12.52□□□□□ -0.41
LEMD3-202ENST00000539442 SLC44A5Q8NCS7 719 aa12.52□□□□□ -0.41
LEMD3-202ENST00000539442 NKX2-3Q8TAU0 364 aa12.52□□□□□ -0.41
LEMD3-202ENST00000539442 IGDCC4Q8TDY8 1250 aa12.52□□□□□ -0.41
LEMD3-202ENST00000539442 CCDC17Q96LX7 622 aa12.52□□□□□ -0.41
LEMD3-202ENST00000539442 CSRNP1Q96S65 589 aa12.52□□□□□ -0.41
LEMD3-202ENST00000539442 LRRC2Q9BYS8 371 aa12.52□□□□□ -0.41
LEMD3-202ENST00000539442 TCP11L1Q9NUJ3 509 aa12.52□□□□□ -0.41
LEMD3-202ENST00000539442 PLIN4Q96Q06 1357 aa12.52□□□□□ -0.41
LEMD3-202ENST00000539442 TBC1D12O60347 775 aa12.51□□□□□ -0.41
LEMD3-202ENST00000539442 TSPY3P0CV98 308 aa12.51□□□□□ -0.41
LEMD3-202ENST00000539442 TSPY8P0CW00 308 aa12.51□□□□□ -0.41
LEMD3-202ENST00000539442 SHMT1P34896 483 aa12.51□□□□□ -0.41
LEMD3-202ENST00000539442 HIRAP54198 1017 aaPredicted RBP12.51□□□□□ -0.41
LEMD3-202ENST00000539442 TFAP4Q01664 338 aa12.51□□□□□ -0.41
LEMD3-202ENST00000539442 CUL4AQ13619 759 aa12.51□□□□□ -0.41
LEMD3-202ENST00000539442 RASA3Q14644 834 aa12.51□□□□□ -0.41
LEMD3-202ENST00000539442 WTAPQ15007 396 aa12.51□□□□□ -0.41
LEMD3-202ENST00000539442 ANGEL2Q5VTE6 544 aaKnown RBP12.51□□□□□ -0.41
LEMD3-202ENST00000539442 TATDN1Q6P1N9 297 aa12.51□□□□□ -0.41
LEMD3-202ENST00000539442 NOL8Q76FK4 1167 aaKnown RBP12.51□□□□□ -0.41
LEMD3-202ENST00000539442 NEDD1Q8NHV4 660 aa12.51□□□□□ -0.41
LEMD3-202ENST00000539442 CHMP4CQ96CF2 233 aa12.51□□□□□ -0.41
LEMD3-202ENST00000539442 ZNF274Q96GC6 653 aaPredicted RBP12.51□□□□□ -0.41
LEMD3-202ENST00000539442 ZSCAN10Q96SZ4 725 aaPredicted RBP12.51□□□□□ -0.41
LEMD3-202ENST00000539442 DNAJC18Q9H819 358 aa12.51□□□□□ -0.41
LEMD3-202ENST00000539442 LY9Q9HBG7 655 aa12.51□□□□□ -0.41
LEMD3-202ENST00000539442 GGA3Q9NZ52 723 aa12.51□□□□□ -0.41
LEMD3-202ENST00000539442 PGAP2Q9UHJ9 254 aa12.51□□□□□ -0.41
LEMD3-202ENST00000539442 TPCN1Q9ULQ1 816 aa12.51□□□□□ -0.41
LEMD3-202ENST00000539442 TNKSO95271 1327 aa12.51□□□□□ -0.41
LEMD3-202ENST00000539442 SRCAPQ6ZRS2 3230 aa12.5□□□□□ -0.41
LEMD3-202ENST00000539442 TTLL13PA6NNM8 815 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms