RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 A1CFQ9NQ94 594 aaKnown RBP7.73□□□□□ -1.17
USP28-207ENST00000538475 HMG20BQ9P0W2 317 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 ADAM21Q9UKJ8 722 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 RCOR1Q9UKL0 485 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 LRRC37A3O60309 1634 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 C3P01024 1663 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 NALCNQ8IZF0 1738 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 A0A087WUV0 522 aaPredicted RBP7.72□□□□□ -1.17
USP28-207ENST00000538475 A0A1B0GTH6 734 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 ZBTB7CA1YPR0 619 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 BACH1O14867 736 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 KIF3BO15066 747 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 GLRX3O76003 335 aaKnown RBP7.72□□□□□ -1.17
USP28-207ENST00000538475 SMC2O95347 1197 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 CCDC172P0C7W6 258 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 CSB-PGBD3P0DP91 1061 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 ATP1A2P50993 1020 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 KRT32Q14532 448 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 DBN1Q16643 649 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 E4F1Q66K89 784 aaPredicted RBP7.72□□□□□ -1.17
USP28-207ENST00000538475 MCTP2Q6DN12 878 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 CCDC73Q6ZRK6 1079 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 RSRC2Q7L4I2 434 aaKnown RBP7.72□□□□□ -1.17
USP28-207ENST00000538475 HDXQ7Z353 690 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 ERC1Q8IUD2 1116 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 C10orf67Q8IYJ2 551 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 PGBD3Q8N328 593 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 STAG1Q8WVM7 1258 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 SECISBP2LQ93073 1101 aaKnown RBP7.72□□□□□ -1.17
USP28-207ENST00000538475 RILPL2Q969X0 211 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 ZNF837Q96EG3 531 aaPredicted RBP7.72□□□□□ -1.17
USP28-207ENST00000538475 FUT8Q9BYC5 575 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 DNAJC25Q9H1X3 360 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 MED4Q9NPJ6 270 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 DONSONQ9NYP3 566 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 CEP83Q9Y592 693 aa7.72□□□□□ -1.17
USP28-207ENST00000538475 NPATQ14207 1427 aa7.71□□□□□ -1.17
USP28-207ENST00000538475 VPS37CA5D8V6 355 aaPredicted RBP7.71□□□□□ -1.18
USP28-207ENST00000538475 USP27XA6NNY8 438 aa7.71□□□□□ -1.18
USP28-207ENST00000538475 TMEM229AB2RXF0 380 aa7.71□□□□□ -1.18
USP28-207ENST00000538475 IKBKBO14920 756 aa7.71□□□□□ -1.18
USP28-207ENST00000538475 SRGAP3O43295 1099 aa7.71□□□□□ -1.18
USP28-207ENST00000538475 MCM3P25205 808 aa7.71□□□□□ -1.18
USP28-207ENST00000538475 FAM160A1Q05DH4 1040 aa7.71□□□□□ -1.18
USP28-207ENST00000538475 NAA16Q6N069 864 aaPredicted RBP7.71□□□□□ -1.18
USP28-207ENST00000538475 CCDC83Q8IWF9 413 aa7.71□□□□□ -1.18
USP28-207ENST00000538475 FAM71BQ8TC56 605 aa7.71□□□□□ -1.18
USP28-207ENST00000538475 BICD2Q8TD16 824 aa7.71□□□□□ -1.18
USP28-207ENST00000538475 GOLGA1Q92805 767 aa7.71□□□□□ -1.18
USP28-207ENST00000538475 GTPBP3Q969Y2 492 aaKnown RBP7.71□□□□□ -1.18
USP28-207ENST00000538475 PHACTR3Q96KR7 559 aa7.71□□□□□ -1.18
USP28-207ENST00000538475 ZNF396Q96N95 335 aaPredicted RBP7.71□□□□□ -1.18
USP28-207ENST00000538475 TRERF1Q96PN7 1200 aa7.71□□□□□ -1.18
USP28-207ENST00000538475 NIFKQ9BYG3 293 aaKnown RBP7.71□□□□□ -1.18
USP28-207ENST00000538475 NUCKS1Q9H1E3 243 aaKnown RBP7.71□□□□□ -1.18
USP28-207ENST00000538475 VIPAS39Q9H9C1 493 aa7.71□□□□□ -1.18
USP28-207ENST00000538475 TFIP11Q9UBB9 837 aaKnown RBP7.71□□□□□ -1.18
USP28-207ENST00000538475 RAB21Q9UL25 225 aa7.71□□□□□ -1.18
USP28-207ENST00000538475 SIGLEC1Q9BZZ2 1709 aa7.71□□□□□ -1.18
USP28-207ENST00000538475 ATXN2Q99700 1313 aaKnown RBP7.71□□□□□ -1.18
USP28-207ENST00000538475 MLH3Q9UHC1 1453 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 A0A1W2PQ27 194 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 A0A1W2PQ64 194 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 A0A1W2PQD8 194 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 A6NJY4 79 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 GPR25O00155 361 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 ARHGAP6O43182 974 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 KINO60870 393 aaKnown RBP7.7□□□□□ -1.18
USP28-207ENST00000538475 PPFIA4O75335 1185 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 TXLNAP40222 546 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 EVCP57679 992 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 SRPK2P78362 688 aaKnown RBP7.7□□□□□ -1.18
USP28-207ENST00000538475 KRT76Q01546 638 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 NECTIN1Q15223 517 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 RNFT1Q5M7Z0 435 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 GORABQ5T7V8 394 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 TRIM65Q6PJ69 517 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 SPATS2Q86XZ4 545 aaKnown RBP7.7□□□□□ -1.18
USP28-207ENST00000538475 HOMER1Q86YM7 354 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 CCAR1Q8IX12 1150 aaKnown RBP7.7□□□□□ -1.18
USP28-207ENST00000538475 DHX40Q8IX18 779 aaKnown RBP7.7□□□□□ -1.18
USP28-207ENST00000538475 CKAP2LQ8IYA6 745 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 CEP112Q8N8E3 955 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.7□□□□□ -1.18
USP28-207ENST00000538475 NEK11Q8NG66 645 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 CTCFLQ8NI51 663 aaPredicted RBP7.7□□□□□ -1.18
USP28-207ENST00000538475 DNAAF4Q8WXU2 420 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 AIDAQ96BJ3 306 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 GPATCH3Q96I76 525 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 TMX1Q9H3N1 280 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 DIP2AQ14689 1571 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 TMEM131LA2VDJ0 1609 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 JCADQ9P266 1359 aa7.7□□□□□ -1.18
USP28-207ENST00000538475 MED1Q15648 1581 aaPredicted RBP7.69□□□□□ -1.18
USP28-207ENST00000538475 EIF3CLB5ME19 914 aaKnown RBP7.69□□□□□ -1.18
USP28-207ENST00000538475 POLR3GO15318 223 aaPredicted RBP7.69□□□□□ -1.18
USP28-207ENST00000538475 APPP05067 770 aa7.69□□□□□ -1.18
USP28-207ENST00000538475 MSX1P28360 303 aa7.69□□□□□ -1.18
USP28-207ENST00000538475 APOBRQ0VD83 1088 aa7.69□□□□□ -1.18
USP28-207ENST00000538475 RESTQ13127 1097 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms