RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 TTC41PQ6P2S7 1318 aa17.86■□□□□ 0.45
USP28-204ENST00000537642 HTTP42858 3142 aa17.86■□□□□ 0.45
USP28-204ENST00000537642 LACTBP83111 547 aaPredicted RBP17.85■□□□□ 0.45
USP28-204ENST00000537642 TREML2Q5T2D2 321 aa17.85■□□□□ 0.45
USP28-204ENST00000537642 ANKRD45Q5TZF3 282 aa17.85■□□□□ 0.45
USP28-204ENST00000537642 EXOC6Q8TAG9 804 aa17.85■□□□□ 0.45
USP28-204ENST00000537642 GCC1Q96CN9 775 aa17.85■□□□□ 0.45
USP28-204ENST00000537642 WDR18Q9BV38 432 aa17.85■□□□□ 0.45
USP28-204ENST00000537642 SALL3Q9BXA9 1300 aa17.85■□□□□ 0.45
USP28-204ENST00000537642 ARHGAP39Q9C0H5 1083 aa17.85■□□□□ 0.45
USP28-204ENST00000537642 PUS7LQ9H0K6 701 aaKnown RBP17.85■□□□□ 0.45
USP28-204ENST00000537642 AS3MTQ9HBK9 375 aa17.85■□□□□ 0.45
USP28-204ENST00000537642 AGTPBP1Q9UPW5 1226 aa17.85■□□□□ 0.45
USP28-204ENST00000537642 PTPN22Q9Y2R2 807 aa17.85■□□□□ 0.45
USP28-204ENST00000537642 SUPT16HQ9Y5B9 1047 aaKnown RBP17.85■□□□□ 0.45
USP28-204ENST00000537642 HMGCS2P54868 508 aa17.84■□□□□ 0.45
USP28-204ENST00000537642 GABPAQ06546 454 aa17.84■□□□□ 0.45
USP28-204ENST00000537642 SH3D19Q5HYK7 790 aa17.84■□□□□ 0.45
USP28-204ENST00000537642 PROCA1Q8NCQ7 364 aaPredicted RBP17.84■□□□□ 0.45
USP28-204ENST00000537642 ERC2O15083 957 aa17.83■□□□□ 0.44
USP28-204ENST00000537642 GH2P01242 217 aa17.83■□□□□ 0.44
USP28-204ENST00000537642 CYP2D6P10635 497 aa17.83■□□□□ 0.44
USP28-204ENST00000537642 BCRP11274 1271 aa17.83■□□□□ 0.44
USP28-204ENST00000537642 MX1P20591 662 aa17.83■□□□□ 0.44
USP28-204ENST00000537642 SHMT1P34896 483 aa17.83■□□□□ 0.44
USP28-204ENST00000537642 ATP8A2Q9NTI2 1148 aa17.83■□□□□ 0.44
USP28-204ENST00000537642 GLRX3O76003 335 aaKnown RBP17.82■□□□□ 0.44
USP28-204ENST00000537642 CTGFP29279 349 aa17.82■□□□□ 0.44
USP28-204ENST00000537642 BACE1P56817 501 aa17.82■□□□□ 0.44
USP28-204ENST00000537642 MTMR2Q13614 643 aa17.82■□□□□ 0.44
USP28-204ENST00000537642 KIF22Q14807 665 aa17.82■□□□□ 0.44
USP28-204ENST00000537642 ARHGEF6Q15052 776 aa17.82■□□□□ 0.44
USP28-204ENST00000537642 CERKLQ49MI3 558 aaPredicted RBP17.82■□□□□ 0.44
USP28-204ENST00000537642 MYH8P13535 1937 aa17.81■□□□□ 0.44
USP28-204ENST00000537642 RNF113AO15541 343 aaKnown RBP17.81■□□□□ 0.44
USP28-204ENST00000537642 ECM2O94769 699 aaPredicted RBP17.81■□□□□ 0.44
USP28-204ENST00000537642 RGS19P49795 217 aa17.81■□□□□ 0.44
USP28-204ENST00000537642 APPBP2Q92624 585 aa17.81■□□□□ 0.44
USP28-204ENST00000537642 OSBP2Q969R2 916 aa17.81■□□□□ 0.44
USP28-204ENST00000537642 ZBTB47Q9UFB7 747 aaPredicted RBP17.81■□□□□ 0.44
USP28-204ENST00000537642 SLC4A4Q9Y6R1 1079 aa17.81■□□□□ 0.44
USP28-204ENST00000537642 MGAMO43451 1857 aa17.81■□□□□ 0.44
USP28-204ENST00000537642 CENPFP49454 3210 aa17.8■□□□□ 0.44
USP28-204ENST00000537642 CYP2D7A0A087X1C5 515 aa17.8■□□□□ 0.44
USP28-204ENST00000537642 C19orf81C9J6K1 198 aa17.8■□□□□ 0.44
USP28-204ENST00000537642 USP17L10C9JJH3 530 aa17.8■□□□□ 0.44
USP28-204ENST00000537642 SMIM22K7EJ46 135 aa17.8■□□□□ 0.44
USP28-204ENST00000537642 ZFYP08048 801 aaPredicted RBP17.8■□□□□ 0.44
USP28-204ENST00000537642 SOX10P56693 466 aa17.8■□□□□ 0.44
USP28-204ENST00000537642 ABCB5Q2M3G0 1257 aa17.8■□□□□ 0.44
USP28-204ENST00000537642 SMC5Q8IY18 1101 aa17.8■□□□□ 0.44
USP28-204ENST00000537642 SLC44A5Q8NCS7 719 aa17.8■□□□□ 0.44
USP28-204ENST00000537642 TRIM47Q96LD4 638 aa17.8■□□□□ 0.44
USP28-204ENST00000537642 STRBPQ96SI9 672 aaKnown RBP17.8■□□□□ 0.44
USP28-204ENST00000537642 USP17L12C9JPN9 530 aa17.79■□□□□ 0.44
USP28-204ENST00000537642 USP17L21D6R901 530 aa17.79■□□□□ 0.44
USP28-204ENST00000537642 IGHDP01880 384 aa17.79■□□□□ 0.44
USP28-204ENST00000537642 GUCY1A2P33402 732 aa17.79■□□□□ 0.44
USP28-204ENST00000537642 PSMC4P43686 418 aa17.79■□□□□ 0.44
USP28-204ENST00000537642 RAB3GAP1Q15042 981 aa17.79■□□□□ 0.44
USP28-204ENST00000537642 C12orf60Q5U649 245 aa17.79■□□□□ 0.44
USP28-204ENST00000537642 SMCR8Q8TEV9 937 aaPredicted RBP17.79■□□□□ 0.44
USP28-204ENST00000537642 DYNLL2Q96FJ2 89 aa17.79■□□□□ 0.44
USP28-204ENST00000537642 RWDD1Q9H446 243 aaPredicted RBP17.79■□□□□ 0.44
USP28-204ENST00000537642 TMOD4Q9NZQ9 345 aa17.79■□□□□ 0.44
USP28-204ENST00000537642 STAP2Q9UGK3 403 aa17.79■□□□□ 0.44
USP28-204ENST00000537642 PNMA3Q9UL41 463 aa17.79■□□□□ 0.44
USP28-204ENST00000537642 PTCH2Q9Y6C5 1203 aa17.79■□□□□ 0.44
USP28-204ENST00000537642 M0R2C6 588 aa17.78■□□□□ 0.44
USP28-204ENST00000537642 GNRH1P01148 92 aa17.78■□□□□ 0.44
USP28-204ENST00000537642 PDE1AP54750 535 aa17.78■□□□□ 0.44
USP28-204ENST00000537642 PABPC4Q13310 644 aaKnown RBP eCLIP17.78■□□□□ 0.44
USP28-204ENST00000537642 LNPKQ9C0E8 428 aa17.78■□□□□ 0.44
USP28-204ENST00000537642 ASCC2Q9H1I8 757 aaPredicted RBP17.78■□□□□ 0.44
USP28-204ENST00000537642 CABP5Q9NP86 173 aa17.78■□□□□ 0.44
USP28-204ENST00000537642 EMILIN3Q9NT22 766 aa17.78■□□□□ 0.44
USP28-204ENST00000537642 SWAP70Q9UH65 585 aa17.78■□□□□ 0.44
USP28-204ENST00000537642 GSG1L2A8MUP6 293 aa17.77■□□□□ 0.44
USP28-204ENST00000537642 GPAA1O43292 621 aa17.77■□□□□ 0.44
USP28-204ENST00000537642 OSBPP22059 807 aa17.77■□□□□ 0.44
USP28-204ENST00000537642 HOXA7P31268 230 aaPredicted RBP17.77■□□□□ 0.44
USP28-204ENST00000537642 SEPT2Q15019 361 aa17.77■□□□□ 0.44
USP28-204ENST00000537642 LRRFIP1Q32MZ4 808 aaKnown RBP17.77■□□□□ 0.44
USP28-204ENST00000537642 CTR9Q6PD62 1173 aa17.77■□□□□ 0.44
USP28-204ENST00000537642 ANKRD13CQ8N6S4 541 aa17.77■□□□□ 0.44
USP28-204ENST00000537642 ACER1Q8TDN7 264 aa17.77■□□□□ 0.44
USP28-204ENST00000537642 DDRGK1Q96HY6 314 aa17.77■□□□□ 0.44
USP28-204ENST00000537642 FSD1Q9BTV5 496 aa17.77■□□□□ 0.44
USP28-204ENST00000537642 TAOK2Q9UL54 1235 aa17.77■□□□□ 0.44
USP28-204ENST00000537642 DOCK3Q8IZD9 2030 aa17.77■□□□□ 0.43
USP28-204ENST00000537642 FMNL1O95466 1100 aaPredicted RBP17.76■□□□□ 0.43
USP28-204ENST00000537642 B4GALNT3Q6L9W6 998 aa17.76■□□□□ 0.43
USP28-204ENST00000537642 USP17L2Q6R6M4 530 aa17.76■□□□□ 0.43
USP28-204ENST00000537642 AMOTL1Q8IY63 956 aa17.76■□□□□ 0.43
USP28-204ENST00000537642 ARMC5Q96C12 935 aa17.76■□□□□ 0.43
USP28-204ENST00000537642 SEC62Q99442 399 aaKnown RBP17.76■□□□□ 0.43
USP28-204ENST00000537642 SRRDQ9UH36 339 aa17.76■□□□□ 0.43
USP28-204ENST00000537642 MPHOSPH10O00566 681 aaKnown RBP17.75■□□□□ 0.43
USP28-204ENST00000537642 GCLCP48506 637 aaPredicted RBP17.75■□□□□ 0.43
USP28-204ENST00000537642 CDK8P49336 464 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 187 ms