RNA–Protein interactions for RNA: ENST00000533733.5

ATM-222, Transcript of ATM serine/threonine kinase, human

TSL 1 (best)

Gene ATM, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATM-222	ENST00000533733	HIBADH	P31937	336 aa	Known RBP	13.74	□□□□□ -0.21
ATM-222	ENST00000533733	CCDC144B	Q3MJ40	725 aa		13.74	□□□□□ -0.21
ATM-222	ENST00000533733	PYM1	Q9BRP8	204 aa	Known RBP	13.74	□□□□□ -0.21
ATM-222	ENST00000533733	BTBD18	B2RXH4	712 aa		13.73	□□□□□ -0.21
ATM-222	ENST00000533733	KRT2	P35908	639 aa		13.73	□□□□□ -0.21
ATM-222	ENST00000533733	NT5DC1	Q5TFE4	455 aa		13.73	□□□□□ -0.21
ATM-222	ENST00000533733	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.73	□□□□□ -0.21
ATM-222	ENST00000533733	FAM177A1	Q8N128	213 aa	Predicted RBP	13.73	□□□□□ -0.21
ATM-222	ENST00000533733	CCDC112	Q8NEF3	446 aa		13.73	□□□□□ -0.21
ATM-222	ENST00000533733	NUP133	Q8WUM0	1156 aa		13.73	□□□□□ -0.21
ATM-222	ENST00000533733	NSUN4	Q96CB9	384 aa	Known RBP	13.73	□□□□□ -0.21
ATM-222	ENST00000533733	SBF2	Q86WG5	1849 aa		13.73	□□□□□ -0.21
ATM-222	ENST00000533733	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.73	□□□□□ -0.21
ATM-222	ENST00000533733	NUTM2E	B1AL46	878 aa	Predicted RBP	13.73	□□□□□ -0.21
ATM-222	ENST00000533733	KCNQ2	O43526	872 aa		13.73	□□□□□ -0.21
ATM-222	ENST00000533733	SKIL	P12757	684 aa		13.73	□□□□□ -0.21
ATM-222	ENST00000533733	PDE4B	Q07343	736 aa		13.73	□□□□□ -0.21
ATM-222	ENST00000533733	LRMP	Q12912	555 aa		13.73	□□□□□ -0.21
ATM-222	ENST00000533733	NCAPH	Q15003	741 aa		13.73	□□□□□ -0.21
ATM-222	ENST00000533733	TPD52L1	Q16890	204 aa	Predicted RBP	13.73	□□□□□ -0.21
ATM-222	ENST00000533733	TBC1D9B	Q66K14	1250 aa		13.73	□□□□□ -0.21
ATM-222	ENST00000533733	ADGRA1	Q86SQ6	560 aa		13.73	□□□□□ -0.21
ATM-222	ENST00000533733	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.73	□□□□□ -0.21
ATM-222	ENST00000533733	C17orf53	Q8N3J3	647 aa	Predicted RBP	13.73	□□□□□ -0.21
ATM-222	ENST00000533733	ENAH	Q8N8S7	591 aa	Predicted RBP	13.73	□□□□□ -0.21
ATM-222	ENST00000533733	SDR42E1	Q8WUS8	393 aa		13.73	□□□□□ -0.21
ATM-222	ENST00000533733	FERMT2	Q96AC1	680 aa		13.73	□□□□□ -0.21
ATM-222	ENST00000533733	BCL2L12	Q9HB09	334 aa		13.73	□□□□□ -0.21
ATM-222	ENST00000533733	INCENP	Q9NQS7	918 aa		13.73	□□□□□ -0.21
ATM-222	ENST00000533733	FBXO2	Q9UK22	296 aa	Predicted RBP	13.73	□□□□□ -0.21
ATM-222	ENST00000533733	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
ATM-222	ENST00000533733	TRAPPC10	P48553	1259 aa		13.72	□□□□□ -0.21
ATM-222	ENST00000533733	MLKL	Q8NB16	471 aa		13.72	□□□□□ -0.21
ATM-222	ENST00000533733	CELF1	Q92879	486 aa	Known RBP	13.72	□□□□□ -0.21
ATM-222	ENST00000533733	ZKSCAN3	Q9BRR0	538 aa		13.72	□□□□□ -0.21
ATM-222	ENST00000533733	PHF20	Q9BVI0	1012 aa		13.72	□□□□□ -0.21
ATM-222	ENST00000533733	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
ATM-222	ENST00000533733	LEMD3	Q9Y2U8	911 aa		13.72	□□□□□ -0.21
ATM-222	ENST00000533733	RTCB	Q9Y3I0	505 aa	Known RBP	13.72	□□□□□ -0.21
ATM-222	ENST00000533733	NAV1	Q8NEY1	1877 aa		13.72	□□□□□ -0.21
ATM-222	ENST00000533733	PSD	A5PKW4	1024 aa	Predicted RBP	13.71	□□□□□ -0.21
ATM-222	ENST00000533733	TRIM75P	A6NK02	468 aa		13.71	□□□□□ -0.21
ATM-222	ENST00000533733	CTIF	O43310	598 aa	Known RBP	13.71	□□□□□ -0.21
ATM-222	ENST00000533733	SMC2	O95347	1197 aa		13.71	□□□□□ -0.21
ATM-222	ENST00000533733	TNNT1	P13805	278 aa		13.71	□□□□□ -0.21
ATM-222	ENST00000533733	SFPQ	P23246	707 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
ATM-222	ENST00000533733	HMGB2	P26583	209 aa	Known RBP	13.71	□□□□□ -0.21
ATM-222	ENST00000533733	TOB1	P50616	345 aa	Predicted RBP	13.71	□□□□□ -0.21
ATM-222	ENST00000533733	GSTO1	P78417	241 aa		13.71	□□□□□ -0.21
ATM-222	ENST00000533733	CCZ1B	P86790	482 aa		13.71	□□□□□ -0.21
ATM-222	ENST00000533733	CCZ1	P86791	482 aa	Predicted RBP	13.71	□□□□□ -0.21
ATM-222	ENST00000533733	TROAP	Q12815	778 aa		13.71	□□□□□ -0.21
ATM-222	ENST00000533733	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.71	□□□□□ -0.21
ATM-222	ENST00000533733	FAM98C	Q17RN3	349 aa	Known RBP	13.71	□□□□□ -0.21
ATM-222	ENST00000533733	CTR9	Q6PD62	1173 aa		13.71	□□□□□ -0.21
ATM-222	ENST00000533733	STK11IP	Q8N1F8	1099 aa		13.71	□□□□□ -0.21
ATM-222	ENST00000533733	CTCFL	Q8NI51	663 aa	Predicted RBP	13.71	□□□□□ -0.21
ATM-222	ENST00000533733	WDR66	Q8TBY9	1149 aa		13.71	□□□□□ -0.21
ATM-222	ENST00000533733	KIF5B	P33176	963 aa		13.7	□□□□□ -0.22
ATM-222	ENST00000533733	GUCY1A2	P33402	732 aa		13.7	□□□□□ -0.22
ATM-222	ENST00000533733	FANCC	Q00597	558 aa		13.7	□□□□□ -0.22
ATM-222	ENST00000533733	POSTN	Q15063	836 aa		13.7	□□□□□ -0.22
ATM-222	ENST00000533733	TMTC3	Q6ZXV5	915 aa		13.7	□□□□□ -0.22
ATM-222	ENST00000533733	FILIP1	Q7Z7B0	1213 aa		13.7	□□□□□ -0.22
ATM-222	ENST00000533733	METTL16	Q86W50	562 aa	Known RBP	13.7	□□□□□ -0.22
ATM-222	ENST00000533733	AMOTL1	Q8IY63	956 aa		13.7	□□□□□ -0.22
ATM-222	ENST00000533733	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.7	□□□□□ -0.22
ATM-222	ENST00000533733	XPO4	Q9C0E2	1151 aa	Known RBP	13.7	□□□□□ -0.22
ATM-222	ENST00000533733	IFNK	Q9P0W0	207 aa		13.7	□□□□□ -0.22
ATM-222	ENST00000533733	MDM2	Q00987	491 aa	Predicted RBP	13.7	□□□□□ -0.22
ATM-222	ENST00000533733	MECOM	Q03112	1051 aa		13.7	□□□□□ -0.22
ATM-222	ENST00000533733	FUT2	Q10981	343 aa		13.7	□□□□□ -0.22
ATM-222	ENST00000533733	PTPN14	Q15678	1187 aa		13.7	□□□□□ -0.22
ATM-222	ENST00000533733	LONRF3	Q496Y0	759 aa		13.7	□□□□□ -0.22
ATM-222	ENST00000533733	C15orf52	Q6ZUT6	534 aa	Known RBP	13.7	□□□□□ -0.22
ATM-222	ENST00000533733	C3orf67	Q6ZVT6	689 aa		13.7	□□□□□ -0.22
ATM-222	ENST00000533733	SMARCE1	Q969G3	411 aa		13.7	□□□□□ -0.22
ATM-222	ENST00000533733	CLIC6	Q96NY7	704 aa		13.7	□□□□□ -0.22
ATM-222	ENST00000533733	DCP1A	Q9NPI6	582 aa	Predicted RBP	13.7	□□□□□ -0.22
ATM-222	ENST00000533733	KCNJ14	Q9UNX9	436 aa		13.7	□□□□□ -0.22
ATM-222	ENST00000533733	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.7	□□□□□ -0.22
ATM-222	ENST00000533733	ROBO3	Q96MS0	1386 aa		13.69	□□□□□ -0.22
ATM-222	ENST00000533733	USP17L12	C9JPN9	530 aa		13.69	□□□□□ -0.22
ATM-222	ENST00000533733	USP17L21	D6R901	530 aa		13.69	□□□□□ -0.22
ATM-222	ENST00000533733	BIN1	O00499	593 aa		13.69	□□□□□ -0.22
ATM-222	ENST00000533733	RIOK3	O14730	519 aa	Known RBP	13.69	□□□□□ -0.22
ATM-222	ENST00000533733	SARS	P49591	514 aa	Known RBP	13.69	□□□□□ -0.22
ATM-222	ENST00000533733	DYNLL1	P63167	89 aa	Known RBP	13.69	□□□□□ -0.22
ATM-222	ENST00000533733	PNOC	Q13519	176 aa		13.69	□□□□□ -0.22
ATM-222	ENST00000533733	NYAP1	Q6ZVC0	841 aa		13.69	□□□□□ -0.22
ATM-222	ENST00000533733	ENOX1	Q8TC92	643 aa	Known RBP	13.69	□□□□□ -0.22
ATM-222	ENST00000533733	ERCC4	Q92889	916 aa	Predicted RBP	13.69	□□□□□ -0.22
ATM-222	ENST00000533733	SH3GLB2	Q9NR46	395 aa		13.69	□□□□□ -0.22
ATM-222	ENST00000533733	PCDHA5	Q9Y5H7	936 aa		13.69	□□□□□ -0.22
ATM-222	ENST00000533733	LDHC	P07864	332 aa		13.68	□□□□□ -0.22
ATM-222	ENST00000533733	CALML3	P27482	149 aa		13.68	□□□□□ -0.22
ATM-222	ENST00000533733	ERCC5	P28715	1186 aa	Predicted RBP	13.68	□□□□□ -0.22
ATM-222	ENST00000533733	GNAQ	P50148	359 aa		13.68	□□□□□ -0.22
ATM-222	ENST00000533733	UBASH3A	P57075	661 aa		13.68	□□□□□ -0.22
ATM-222	ENST00000533733	PKN1	Q16512	942 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms