RNA–Protein interactions for RNA: ENST00000529828.5

PTPRC-213, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 2,336 nt, Biotype non stop decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-213ENST00000529828 SPP2Q13103 211 aa4.4□□□□□ -1.7
PTPRC-213ENST00000529828 FAM110CQ1W6H9 321 aa4.4□□□□□ -1.7
PTPRC-213ENST00000529828 LRRC26Q2I0M4 334 aa4.4□□□□□ -1.7
PTPRC-213ENST00000529828 LPIN2Q92539 896 aa4.4□□□□□ -1.7
PTPRC-213ENST00000529828 ABCF2Q9UG63 623 aa4.4□□□□□ -1.7
PTPRC-213ENST00000529828 DOCK3Q8IZD9 2030 aa4.4□□□□□ -1.7
PTPRC-213ENST00000529828 CCND3P30281 292 aaPredicted RBP4.4□□□□□ -1.71
PTPRC-213ENST00000529828 BTDP43251 543 aa4.4□□□□□ -1.71
PTPRC-213ENST00000529828 RFX5P48382 616 aaPredicted RBP4.4□□□□□ -1.71
PTPRC-213ENST00000529828 RRP1BQ14684 758 aaKnown RBP4.4□□□□□ -1.71
PTPRC-213ENST00000529828 CCL14Q16627 93 aa4.4□□□□□ -1.71
PTPRC-213ENST00000529828 ATP2B3Q16720 1220 aa4.4□□□□□ -1.71
PTPRC-213ENST00000529828 ARSIQ5FYB1 569 aa4.4□□□□□ -1.71
PTPRC-213ENST00000529828 DZIP1Q86YF9 867 aaKnown RBP4.4□□□□□ -1.71
PTPRC-213ENST00000529828 ANKLE1Q8NAG6 615 aa4.4□□□□□ -1.71
PTPRC-213ENST00000529828 ASCC2Q9H1I8 757 aaPredicted RBP4.4□□□□□ -1.71
PTPRC-213ENST00000529828 GJD2Q9UKL4 321 aa4.4□□□□□ -1.71
PTPRC-213ENST00000529828 PNMA3Q9UL41 463 aa4.4□□□□□ -1.71
PTPRC-213ENST00000529828 OGDHLQ9ULD0 1010 aa4.4□□□□□ -1.71
PTPRC-213ENST00000529828 SLC45A1Q9Y2W3 748 aa4.4□□□□□ -1.71
PTPRC-213ENST00000529828 UTYO14607 1347 aa4.4□□□□□ -1.71
PTPRC-213ENST00000529828 KIF16BQ96L93 1317 aa4.4□□□□□ -1.71
PTPRC-213ENST00000529828 DOCK1Q14185 1865 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 CTNND1O60716 968 aaKnown RBP4.39□□□□□ -1.71
PTPRC-213ENST00000529828 ENTPD3O75355 529 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 SHROOM1Q2M3G4 852 aaPredicted RBP4.39□□□□□ -1.71
PTPRC-213ENST00000529828 ATG9AQ7Z3C6 839 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 IDI2Q9BXS1 227 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.39□□□□□ -1.71
PTPRC-213ENST00000529828 PA2G4Q9UQ80 394 aaKnown RBP4.39□□□□□ -1.71
PTPRC-213ENST00000529828 NDUFB9Q9Y6M9 179 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 PTPRFP10586 1907 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 MYH13Q9UKX3 1938 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 GAKO14976 1311 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 ZKSCAN1P17029 563 aaPredicted RBP4.39□□□□□ -1.71
PTPRC-213ENST00000529828 IRX3P78415 501 aaPredicted RBP4.39□□□□□ -1.71
PTPRC-213ENST00000529828 CACNB2Q08289 660 aaPredicted RBP4.39□□□□□ -1.71
PTPRC-213ENST00000529828 MTMR2Q13614 643 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 RASGRF1Q13972 1273 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 WDR63Q8IWG1 891 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 MRPL50Q8N5N7 158 aaKnown RBP4.39□□□□□ -1.71
PTPRC-213ENST00000529828 ZNF280CQ8ND82 737 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 PAGR1Q9BTK6 254 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 USP44Q9H0E7 712 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 MRS2Q9HD23 443 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 TXNRD2Q9NNW7 524 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 GNL3LQ9NVN8 582 aaKnown RBP4.39□□□□□ -1.71
PTPRC-213ENST00000529828 DENND2AQ9ULE3 1009 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 PHIPQ8WWQ0 1821 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 MROH7-TTC4A0A0A0MT08 1334 aa4.39□□□□□ -1.71
PTPRC-213ENST00000529828 COL6A1P12109 1028 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 GCLCP48506 637 aaPredicted RBP4.38□□□□□ -1.71
PTPRC-213ENST00000529828 RHBDL3P58872 404 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 JAG1P78504 1218 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 MAP3K21Q5TCX8 1036 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 CCDC102BQ68D86 513 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 PI16Q6UXB8 463 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 PROCA1Q8NCQ7 364 aaPredicted RBP4.38□□□□□ -1.71
PTPRC-213ENST00000529828 MAFAQ8NHW3 353 aaPredicted RBP4.38□□□□□ -1.71
PTPRC-213ENST00000529828 ZNF384Q8TF68 577 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 MYLIPQ8WY64 445 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 P2RX7Q99572 595 aaKnown RBP4.38□□□□□ -1.71
PTPRC-213ENST00000529828 PORCNQ9H237 461 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 RAPGEFL1Q9UHV5 662 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 SALL1Q9NSC2 1324 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 PLXNB2O15031 1838 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 LOC285556D6RIA3 1793 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 GDF11O95390 407 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 TIMM10P62072 90 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 HERVK_113P62684 666 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 MAP3K10Q02779 954 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 MECOMQ03112 1051 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 PABPC4Q13310 644 aaKnown RBP eCLIP4.38□□□□□ -1.71
PTPRC-213ENST00000529828 PDE3AQ14432 1141 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 Q3C1V9 767 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 C9orf50Q5SZB4 431 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 ZNF697Q5TEC3 545 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 WDR78Q5VTH9 848 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 TBC1D9Q6ZT07 1266 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 CDX2Q99626 313 aaPredicted RBP4.38□□□□□ -1.71
PTPRC-213ENST00000529828 LBHD1Q9BQE6 289 aaPredicted RBP4.38□□□□□ -1.71
PTPRC-213ENST00000529828 NUDT12Q9BQG2 462 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 SENP6Q9GZR1 1112 aaPredicted RBP4.38□□□□□ -1.71
PTPRC-213ENST00000529828 CWC22Q9HCG8 908 aaKnown RBP4.38□□□□□ -1.71
PTPRC-213ENST00000529828 PRDM5Q9NQX1 630 aaPredicted RBP4.38□□□□□ -1.71
PTPRC-213ENST00000529828 CEP126Q9P2H0 1117 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 MORF4L1Q9UBU8 362 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 CACNA1FO60840 1977 aa4.38□□□□□ -1.71
PTPRC-213ENST00000529828 MYH2Q9UKX2 1941 aa4.37□□□□□ -1.71
PTPRC-213ENST00000529828 BDP1A6H8Y1 2624 aa4.37□□□□□ -1.71
PTPRC-213ENST00000529828 USP17L5A8MUK1 530 aa4.37□□□□□ -1.71
PTPRC-213ENST00000529828 TK2O00142 265 aa4.37□□□□□ -1.71
PTPRC-213ENST00000529828 CAPN2P17655 700 aa4.37□□□□□ -1.71
PTPRC-213ENST00000529828 CNGA1P29973 690 aa4.37□□□□□ -1.71
PTPRC-213ENST00000529828 CAP2P40123 477 aa4.37□□□□□ -1.71
PTPRC-213ENST00000529828 ZYXQ15942 572 aaKnown RBP4.37□□□□□ -1.71
PTPRC-213ENST00000529828 ANO1Q5XXA6 986 aa4.37□□□□□ -1.71
PTPRC-213ENST00000529828 GPR142Q7Z601 462 aa4.37□□□□□ -1.71
PTPRC-213ENST00000529828 CCAR1Q8IX12 1150 aaKnown RBP4.37□□□□□ -1.71
PTPRC-213ENST00000529828 TEX11Q8IYF3 940 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms