RNA–Protein interactions for RNA: ENST00000527020.5

USH1C-205, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,159 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-205ENST00000527020 SBF2Q86WG5 1849 aa20.22■□□□□ 0.83
USH1C-205ENST00000527020 TAF1LQ8IZX4 1826 aa20.22■□□□□ 0.83
USH1C-205ENST00000527020 TNRC6CQ9HCJ0 1690 aaKnown RBP20.22■□□□□ 0.83
USH1C-205ENST00000527020 PDS5AQ29RF7 1337 aaKnown RBP20.22■□□□□ 0.83
USH1C-205ENST00000527020 FOXN1O15353 648 aa20.22■□□□□ 0.83
USH1C-205ENST00000527020 PIP4K2BP78356 416 aa20.22■□□□□ 0.83
USH1C-205ENST00000527020 PPP2R5BQ15173 497 aa20.22■□□□□ 0.83
USH1C-205ENST00000527020 VPS72Q15906 364 aa20.22■□□□□ 0.83
USH1C-205ENST00000527020 CCDC24Q8N4L8 307 aa20.22■□□□□ 0.83
USH1C-205ENST00000527020 MAP7D2Q96T17 732 aa20.22■□□□□ 0.83
USH1C-205ENST00000527020 NYXQ9GZU5 481 aa20.22■□□□□ 0.83
USH1C-205ENST00000527020 TFCP2L1Q9NZI6 479 aa20.22■□□□□ 0.83
USH1C-205ENST00000527020 IMPACTQ9P2X3 320 aa20.22■□□□□ 0.83
USH1C-205ENST00000527020 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.22■□□□□ 0.83
USH1C-205ENST00000527020 SMC2O95347 1197 aa20.21■□□□□ 0.83
USH1C-205ENST00000527020 ELOA2Q8IYF1 753 aaPredicted RBP20.21■□□□□ 0.83
USH1C-205ENST00000527020 CNNM3Q8NE01 707 aa20.21■□□□□ 0.83
USH1C-205ENST00000527020 NLRP3Q96P20 1036 aa20.21■□□□□ 0.83
USH1C-205ENST00000527020 SETDB2Q96T68 719 aa20.21■□□□□ 0.83
USH1C-205ENST00000527020 PCDHA5Q9Y5H7 936 aa20.21■□□□□ 0.83
USH1C-205ENST00000527020 NHSQ6T4R5 1651 aa20.21■□□□□ 0.83
USH1C-205ENST00000527020 USP17L12C9JPN9 530 aa20.21■□□□□ 0.83
USH1C-205ENST00000527020 USP17L21D6R901 530 aa20.21■□□□□ 0.83
USH1C-205ENST00000527020 PLEKHA8P1O95397 391 aa20.21■□□□□ 0.83
USH1C-205ENST00000527020 ATP1A3P13637 1013 aa20.21■□□□□ 0.83
USH1C-205ENST00000527020 TNNT1P13805 278 aa20.21■□□□□ 0.83
USH1C-205ENST00000527020 BMP6P22004 513 aa20.21■□□□□ 0.83
USH1C-205ENST00000527020 LMOD1P29536 600 aaPredicted RBP20.21■□□□□ 0.83
USH1C-205ENST00000527020 GSDMDP57764 484 aa20.21■□□□□ 0.83
USH1C-205ENST00000527020 TROAPQ12815 778 aa20.21■□□□□ 0.83
USH1C-205ENST00000527020 NBPF5PQ86XG9 351 aaPredicted RBP20.21■□□□□ 0.83
USH1C-205ENST00000527020 FAM205CA6NFA0 338 aa20.2■□□□□ 0.82
USH1C-205ENST00000527020 PCP11498 1178 aaKnown RBP20.2■□□□□ 0.82
USH1C-205ENST00000527020 TM4SF1P30408 202 aa20.2■□□□□ 0.82
USH1C-205ENST00000527020 TPD52L1Q16890 204 aaPredicted RBP20.2■□□□□ 0.82
USH1C-205ENST00000527020 IFIT1BQ5T764 474 aaKnown RBP20.2■□□□□ 0.82
USH1C-205ENST00000527020 VPS54Q9P1Q0 977 aa20.2■□□□□ 0.82
USH1C-205ENST00000527020 IRS2Q9Y4H2 1338 aa20.2■□□□□ 0.82
USH1C-205ENST00000527020 HIBADHP31937 336 aaKnown RBP20.19■□□□□ 0.82
USH1C-205ENST00000527020 FANCCQ00597 558 aa20.19■□□□□ 0.82
USH1C-205ENST00000527020 ARMCX5Q6P1M9 558 aa20.19■□□□□ 0.82
USH1C-205ENST00000527020 PHF20Q9BVI0 1012 aa20.19■□□□□ 0.82
USH1C-205ENST00000527020 CABP5Q9NP86 173 aa20.19■□□□□ 0.82
USH1C-205ENST00000527020 GNPATO15228 680 aa20.19■□□□□ 0.82
USH1C-205ENST00000527020 CTIFO43310 598 aaKnown RBP20.19■□□□□ 0.82
USH1C-205ENST00000527020 PRPF3O43395 683 aaKnown RBP20.19■□□□□ 0.82
USH1C-205ENST00000527020 PRDX5P30044 214 aa20.19■□□□□ 0.82
USH1C-205ENST00000527020 TPM4P67936 248 aa20.19■□□□□ 0.82
USH1C-205ENST00000527020 EARS2Q5JPH6 523 aaKnown RBP20.19■□□□□ 0.82
USH1C-205ENST00000527020 TMC6Q7Z403 805 aa20.19■□□□□ 0.82
USH1C-205ENST00000527020 TXNRD3Q86VQ6 643 aa20.19■□□□□ 0.82
USH1C-205ENST00000527020 ZNF579Q8NAF0 562 aaKnown RBP20.19■□□□□ 0.82
USH1C-205ENST00000527020 DCP1AQ9NPI6 582 aaPredicted RBP20.19■□□□□ 0.82
USH1C-205ENST00000527020 AATFQ9NY61 560 aaKnown RBP eCLIP20.19■□□□□ 0.82
USH1C-205ENST00000527020 SRPRBQ9Y5M8 271 aaKnown RBP20.19■□□□□ 0.82
USH1C-205ENST00000527020 hCG_1642624A0A1W2PR95 340 aa20.18■□□□□ 0.82
USH1C-205ENST00000527020 MYL5Q02045 173 aa20.18■□□□□ 0.82
USH1C-205ENST00000527020 NYAP1Q6ZVC0 841 aa20.18■□□□□ 0.82
USH1C-205ENST00000527020 CATIPQ7Z7H3 387 aa20.18■□□□□ 0.82
USH1C-205ENST00000527020 C8orf37Q96NL8 207 aa20.18■□□□□ 0.82
USH1C-205ENST00000527020 ANKRD2Q9GZV1 360 aa20.18■□□□□ 0.82
USH1C-205ENST00000527020 BAZ2BQ9UIF8 2168 aaKnown RBP20.18■□□□□ 0.82
USH1C-205ENST00000527020 ORC4O43929 436 aa20.18■□□□□ 0.82
USH1C-205ENST00000527020 PDE4BQ07343 736 aa20.18■□□□□ 0.82
USH1C-205ENST00000527020 IQCA1Q86XH1 822 aa20.18■□□□□ 0.82
USH1C-205ENST00000527020 KCND1Q9NSA2 647 aa20.18■□□□□ 0.82
USH1C-205ENST00000527020 LY75O60449 1722 aa20.17■□□□□ 0.82
USH1C-205ENST00000527020 POLR2DO15514 142 aaKnown RBP20.17■□□□□ 0.82
USH1C-205ENST00000527020 USP49Q70CQ1 688 aa20.17■□□□□ 0.82
USH1C-205ENST00000527020 MTERF4Q7Z6M4 381 aaKnown RBP20.17■□□□□ 0.82
USH1C-205ENST00000527020 DPF2Q92785 391 aa20.17■□□□□ 0.82
USH1C-205ENST00000527020 RBM28Q9NW13 759 aaKnown RBP20.17■□□□□ 0.82
USH1C-205ENST00000527020 V9GY48 417 aaPredicted RBP20.17■□□□□ 0.82
USH1C-205ENST00000527020 THSD7AQ9UPZ6 1657 aa20.17■□□□□ 0.82
USH1C-205ENST00000527020 NMT2O60551 498 aa20.17■□□□□ 0.82
USH1C-205ENST00000527020 ZPR1O75312 459 aa20.17■□□□□ 0.82
USH1C-205ENST00000527020 PRR29P0C7W0 189 aa20.17■□□□□ 0.82
USH1C-205ENST00000527020 CYP2D6P10635 497 aa20.17■□□□□ 0.82
USH1C-205ENST00000527020 ATP2B1P20020 1258 aa20.17■□□□□ 0.82
USH1C-205ENST00000527020 AKAP17AQ02040 695 aaKnown RBP20.17■□□□□ 0.82
USH1C-205ENST00000527020 NPY5RQ15761 445 aa20.17■□□□□ 0.82
USH1C-205ENST00000527020 NT5DC1Q5TFE4 455 aa20.17■□□□□ 0.82
USH1C-205ENST00000527020 TMTC3Q6ZXV5 915 aa20.17■□□□□ 0.82
USH1C-205ENST00000527020 SLC51AQ86UW1 340 aa20.17■□□□□ 0.82
USH1C-205ENST00000527020 CCAR2Q8N163 923 aaKnown RBP20.17■□□□□ 0.82
USH1C-205ENST00000527020 NGLY1Q96IV0 654 aa20.17■□□□□ 0.82
USH1C-205ENST00000527020 SERTAD1Q9UHV2 236 aa20.17■□□□□ 0.82
USH1C-205ENST00000527020 MAN1B1Q9UKM7 699 aa20.17■□□□□ 0.82
USH1C-205ENST00000527020 MORC2Q9Y6X9 1032 aaPredicted RBP20.17■□□□□ 0.82
USH1C-205ENST00000527020 CNTNAP5Q8WYK1 1306 aa20.16■□□□□ 0.82
USH1C-205ENST00000527020 DDAH1O94760 285 aa20.16■□□□□ 0.82
USH1C-205ENST00000527020 POSTNQ15063 836 aa20.16■□□□□ 0.82
USH1C-205ENST00000527020 TPTE2Q6XPS3 522 aa20.16■□□□□ 0.82
USH1C-205ENST00000527020 CSRNP2Q9H175 543 aa20.16■□□□□ 0.82
USH1C-205ENST00000527020 CEP131Q9UPN4 1083 aa20.16■□□□□ 0.82
USH1C-205ENST00000527020 WNT7AO00755 349 aa20.15■□□□□ 0.82
USH1C-205ENST00000527020 ACTN4O43707 911 aaKnown RBP20.15■□□□□ 0.82
USH1C-205ENST00000527020 CALM1P0DP23 149 aa20.15■□□□□ 0.82
USH1C-205ENST00000527020 CALM2P0DP24 149 aa20.15■□□□□ 0.82
USH1C-205ENST00000527020 CALM3P0DP25 149 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms