RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 ZCCHC11Q5TAX3 1644 aaKnown RBP6.72□□□□□ -1.33
USP48-211ENST00000526044 MTUS2Q5JR59 1369 aa6.72□□□□□ -1.33
USP48-211ENST00000526044 MAP3K1Q13233 1512 aa6.72□□□□□ -1.33
USP48-211ENST00000526044 CDK13Q14004 1512 aaKnown RBP6.72□□□□□ -1.33
USP48-211ENST00000526044 DCDC2CA8MYV0 355 aa6.72□□□□□ -1.33
USP48-211ENST00000526044 RNGTTO60942 597 aaKnown RBP6.72□□□□□ -1.33
USP48-211ENST00000526044 TFE3P19532 575 aaPredicted RBP6.72□□□□□ -1.33
USP48-211ENST00000526044 DIEXFQ68CQ4 756 aaKnown RBP6.72□□□□□ -1.33
USP48-211ENST00000526044 HDXQ7Z353 690 aa6.72□□□□□ -1.33
USP48-211ENST00000526044 C12orf40Q86WS4 652 aa6.72□□□□□ -1.33
USP48-211ENST00000526044 ZDHHC13Q8IUH4 622 aa6.72□□□□□ -1.33
USP48-211ENST00000526044 SMYD4Q8IYR2 804 aaPredicted RBP6.72□□□□□ -1.33
USP48-211ENST00000526044 TMEM87AQ8NBN3 555 aa6.72□□□□□ -1.33
USP48-211ENST00000526044 PHC3Q8NDX5 983 aa6.72□□□□□ -1.33
USP48-211ENST00000526044 GAL3ST3Q96A11 431 aa6.72□□□□□ -1.33
USP48-211ENST00000526044 ELMO3Q96BJ8 720 aa6.72□□□□□ -1.33
USP48-211ENST00000526044 MIR1-1HGQ9H1L0 117 aa6.72□□□□□ -1.33
USP48-211ENST00000526044 PICK1Q9NRD5 415 aa6.72□□□□□ -1.33
USP48-211ENST00000526044 TLR6Q9Y2C9 796 aa6.72□□□□□ -1.33
USP48-211ENST00000526044 DAGLAQ9Y4D2 1042 aa6.72□□□□□ -1.33
USP48-211ENST00000526044 TIAM1Q13009 1591 aa6.71□□□□□ -1.34
USP48-211ENST00000526044 HCLS1P14317 486 aaPredicted RBP6.71□□□□□ -1.34
USP48-211ENST00000526044 SPINK2P20155 84 aa6.71□□□□□ -1.34
USP48-211ENST00000526044 RING1Q06587 406 aa6.71□□□□□ -1.34
USP48-211ENST00000526044 INPP5AQ14642 412 aa6.71□□□□□ -1.34
USP48-211ENST00000526044 PPM1JQ5JR12 505 aa6.71□□□□□ -1.34
USP48-211ENST00000526044 GIMAP7Q8NHV1 300 aa6.71□□□□□ -1.34
USP48-211ENST00000526044 MFSD14AQ96MC6 490 aa6.71□□□□□ -1.34
USP48-211ENST00000526044 TMEM74Q96NL1 305 aa6.71□□□□□ -1.34
USP48-211ENST00000526044 BACH2Q9BYV9 841 aa6.71□□□□□ -1.34
USP48-211ENST00000526044 SSU72Q9NP77 194 aaKnown RBP6.71□□□□□ -1.34
USP48-211ENST00000526044 PRKAG2Q9UGJ0 569 aa6.71□□□□□ -1.34
USP48-211ENST00000526044 PCOLCE2Q9UKZ9 415 aa6.71□□□□□ -1.34
USP48-211ENST00000526044 CSADQ9Y600 493 aa6.71□□□□□ -1.34
USP48-211ENST00000526044 SNCAIPQ9Y6H5 919 aa6.71□□□□□ -1.34
USP48-211ENST00000526044 FANCGO15287 622 aa6.7□□□□□ -1.34
USP48-211ENST00000526044 VAMP1P23763 118 aa6.7□□□□□ -1.34
USP48-211ENST00000526044 GBP2P32456 591 aaPredicted RBP6.7□□□□□ -1.34
USP48-211ENST00000526044 SEPT6Q14141 434 aa6.7□□□□□ -1.34
USP48-211ENST00000526044 SEZ6L2Q6UXD5 910 aa6.7□□□□□ -1.34
USP48-211ENST00000526044 CCDC84Q86UT8 332 aaPredicted RBP6.7□□□□□ -1.34
USP48-211ENST00000526044 DTX1Q86Y01 620 aa6.7□□□□□ -1.34
USP48-211ENST00000526044 FBXL6Q8N531 539 aa6.7□□□□□ -1.34
USP48-211ENST00000526044 JARID2Q92833 1246 aaPredicted RBP6.7□□□□□ -1.34
USP48-211ENST00000526044 TBC1D32Q96NH3 1257 aa6.7□□□□□ -1.34
USP48-211ENST00000526044 LGR6Q9HBX8 967 aa6.7□□□□□ -1.34
USP48-211ENST00000526044 LRRC9Q6ZRR7 1453 aa6.7□□□□□ -1.34
USP48-211ENST00000526044 ASXL2Q76L83 1435 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 CFAP43Q8NDM7 1665 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 MINDY4BA8MYZ0 360 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 WDR64B1ANS9 1081 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 F6X3S4 739 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 NEFMP07197 916 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 LMNB2Q03252 620 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 CAMK2GQ13555 558 aaPredicted RBP6.69□□□□□ -1.34
USP48-211ENST00000526044 TSNAXIP1Q2TAA8 658 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 LDLRAD1Q5T700 205 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 LRFN4Q6PJG9 635 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.69□□□□□ -1.34
USP48-211ENST00000526044 CYFIP1Q7L576 1253 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 HS2ST1Q7LGA3 356 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 ERMP1Q7Z2K6 904 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 ZAR1Q86SH2 424 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.69□□□□□ -1.34
USP48-211ENST00000526044 SHKBP1Q8TBC3 707 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 ISL2Q96A47 359 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 PLPPR2Q96GM1 343 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 C1GALT1Q9NS00 363 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 ATG3Q9NT62 314 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 GGT7Q9UJ14 662 aa6.69□□□□□ -1.34
USP48-211ENST00000526044 TROQ12816 1431 aaPredicted RBP6.68□□□□□ -1.34
USP48-211ENST00000526044 DYNC1LI2O43237 492 aaPredicted RBP6.68□□□□□ -1.34
USP48-211ENST00000526044 PF4P02776 101 aa6.68□□□□□ -1.34
USP48-211ENST00000526044 F13BP05160 661 aa6.68□□□□□ -1.34
USP48-211ENST00000526044 WIPI1Q5MNZ9 446 aaPredicted RBP6.68□□□□□ -1.34
USP48-211ENST00000526044 ZBTB37Q5TC79 503 aa6.68□□□□□ -1.34
USP48-211ENST00000526044 CDC37L1Q7L3B6 337 aa6.68□□□□□ -1.34
USP48-211ENST00000526044 KCT2Q8NC54 265 aa6.68□□□□□ -1.34
USP48-211ENST00000526044 ZNF507Q8TCN5 953 aa6.68□□□□□ -1.34
USP48-211ENST00000526044 KBTBD4Q9NVX7 518 aa6.68□□□□□ -1.34
USP48-211ENST00000526044 WDR7Q9Y4E6 1490 aa6.67□□□□□ -1.34
USP48-211ENST00000526044 MAPKBP1O60336 1514 aa6.67□□□□□ -1.34
USP48-211ENST00000526044 MAGI3Q5TCQ9 1506 aa6.67□□□□□ -1.34
USP48-211ENST00000526044 PRAMEF27A3QJZ7 478 aa6.67□□□□□ -1.34
USP48-211ENST00000526044 GFRA2O00451 464 aa6.67□□□□□ -1.34
USP48-211ENST00000526044 NTF4P34130 210 aa6.67□□□□□ -1.34
USP48-211ENST00000526044 ADMP35318 185 aa6.67□□□□□ -1.34
USP48-211ENST00000526044 CDK8P49336 464 aa6.67□□□□□ -1.34
USP48-211ENST00000526044 CYP27A1Q02318 531 aa6.67□□□□□ -1.34
USP48-211ENST00000526044 RPL6Q02878 288 aaKnown RBP6.67□□□□□ -1.34
USP48-211ENST00000526044 GATA6Q92908 595 aa6.67□□□□□ -1.34
USP48-211ENST00000526044 MRRFQ96E11 262 aaKnown RBP6.67□□□□□ -1.34
USP48-211ENST00000526044 RHOVQ96L33 236 aa6.67□□□□□ -1.34
USP48-211ENST00000526044 METTL22Q9BUU2 404 aaPredicted RBP6.67□□□□□ -1.34
USP48-211ENST00000526044 OSBPL1AQ9BXW6 950 aa6.67□□□□□ -1.34
USP48-211ENST00000526044 COPRSQ9NQ92 184 aa6.67□□□□□ -1.34
USP48-211ENST00000526044 TACC3Q9Y6A5 838 aa6.67□□□□□ -1.34
USP48-211ENST00000526044 SUPT6HQ7KZ85 1726 aaKnown RBP6.67□□□□□ -1.34
USP48-211ENST00000526044 EHBP1L1Q8N3D4 1523 aa6.66□□□□□ -1.34
USP48-211ENST00000526044 ADAMTS4O75173 837 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms