RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ADAMTS1Q9UHI8 967 aa7.04□□□□□ -1.28
CD44-217ENST00000525348 PRR33A8MZF0 331 aa7.03□□□□□ -1.28
CD44-217ENST00000525348 TLR3O15455 904 aaKnown RBP7.03□□□□□ -1.28
CD44-217ENST00000525348 RECKO95980 971 aa7.03□□□□□ -1.28
CD44-217ENST00000525348 CD96P40200 585 aa7.03□□□□□ -1.28
CD44-217ENST00000525348 FAM196AQ6ZSG2 479 aa7.03□□□□□ -1.28
CD44-217ENST00000525348 ABI1Q8IZP0 508 aa7.03□□□□□ -1.28
CD44-217ENST00000525348 RGS22Q8NE09 1264 aa7.03□□□□□ -1.28
CD44-217ENST00000525348 TNKS2Q9H2K2 1166 aa7.03□□□□□ -1.28
CD44-217ENST00000525348 MKNK2Q9HBH9 465 aa7.03□□□□□ -1.28
CD44-217ENST00000525348 ANGEL1Q9UNK9 670 aaKnown RBP7.03□□□□□ -1.28
CD44-217ENST00000525348 UPK3BL1B0FP48 263 aa7.02□□□□□ -1.29
CD44-217ENST00000525348 UPK3BL2E5RIL1 263 aa7.02□□□□□ -1.29
CD44-217ENST00000525348 IGF2BP3O00425 579 aaKnown RBP eCLIP7.02□□□□□ -1.29
CD44-217ENST00000525348 GRIN3BO60391 1043 aa7.02□□□□□ -1.29
CD44-217ENST00000525348 GREM1O60565 184 aa7.02□□□□□ -1.29
CD44-217ENST00000525348 BPNT1O95861 308 aa7.02□□□□□ -1.29
CD44-217ENST00000525348 EIF4A3P38919 411 aaKnown RBP7.02□□□□□ -1.29
CD44-217ENST00000525348 CRKP46108 304 aa7.02□□□□□ -1.29
CD44-217ENST00000525348 FANCCQ00597 558 aa7.02□□□□□ -1.29
CD44-217ENST00000525348 NKPD1Q17RQ9 610 aa7.02□□□□□ -1.29
CD44-217ENST00000525348 LETMD1Q6P1Q0 360 aa7.02□□□□□ -1.29
CD44-217ENST00000525348 HS2ST1Q7LGA3 356 aa7.02□□□□□ -1.29
CD44-217ENST00000525348 REC114Q7Z4M0 266 aa7.02□□□□□ -1.29
CD44-217ENST00000525348 SPACA3Q8IXA5 215 aa7.02□□□□□ -1.29
CD44-217ENST00000525348 MFSD2AQ8NA29 543 aa7.02□□□□□ -1.29
CD44-217ENST00000525348 FLCNQ8NFG4 579 aa7.02□□□□□ -1.29
CD44-217ENST00000525348 ADAM30Q9UKF2 790 aa7.02□□□□□ -1.29
CD44-217ENST00000525348 PRR36Q9H6K5 1346 aa7.01□□□□□ -1.29
CD44-217ENST00000525348 UNCXA6NJT0 531 aa7.01□□□□□ -1.29
CD44-217ENST00000525348 DNAJA2O60884 412 aa7.01□□□□□ -1.29
CD44-217ENST00000525348 PLCG1P19174 1290 aa7.01□□□□□ -1.29
CD44-217ENST00000525348 PDE4BQ07343 736 aa7.01□□□□□ -1.29
CD44-217ENST00000525348 MPP2Q14168 576 aa7.01□□□□□ -1.29
CD44-217ENST00000525348 IFI16Q16666 785 aaKnown RBP7.01□□□□□ -1.29
CD44-217ENST00000525348 SLC6A19Q695T7 634 aa7.01□□□□□ -1.29
CD44-217ENST00000525348 MCATQ8IVS2 390 aaKnown RBP7.01□□□□□ -1.29
CD44-217ENST00000525348 ZNF296Q8WUU4 475 aaPredicted RBP7.01□□□□□ -1.29
CD44-217ENST00000525348 PRDM5Q9NQX1 630 aaPredicted RBP7.01□□□□□ -1.29
CD44-217ENST00000525348 GTF2IRD1Q9UHL9 959 aa7.01□□□□□ -1.29
CD44-217ENST00000525348 HTR3BO95264 441 aa7□□□□□ -1.29
CD44-217ENST00000525348 CD8BP10966 210 aa7□□□□□ -1.29
CD44-217ENST00000525348 TMEM201Q5SNT2 666 aa7□□□□□ -1.29
CD44-217ENST00000525348 ARHGAP27Q6ZUM4 889 aa7□□□□□ -1.29
CD44-217ENST00000525348 CDH24Q86UP0 819 aa7□□□□□ -1.29
CD44-217ENST00000525348 DNAJB8Q8NHS0 232 aa7□□□□□ -1.29
CD44-217ENST00000525348 PPP1R13LQ8WUF5 828 aa7□□□□□ -1.29
CD44-217ENST00000525348 LRRC3Q9BY71 257 aa7□□□□□ -1.29
CD44-217ENST00000525348 REV1Q9UBZ9 1251 aa7□□□□□ -1.29
CD44-217ENST00000525348 ADGRE2Q9UHX3 823 aa7□□□□□ -1.29
CD44-217ENST00000525348 TPX2Q9ULW0 747 aaKnown RBP7□□□□□ -1.29
CD44-217ENST00000525348 MAPK8IP1Q9UQF2 711 aa7□□□□□ -1.29
CD44-217ENST00000525348 SLC5A6Q9Y289 635 aa7□□□□□ -1.29
CD44-217ENST00000525348 SUPT16HQ9Y5B9 1047 aaKnown RBP7□□□□□ -1.29
CD44-217ENST00000525348 ZNF76P36508 570 aa6.99□□□□□ -1.29
CD44-217ENST00000525348 PRKCQQ04759 706 aa6.99□□□□□ -1.29
CD44-217ENST00000525348 FBXL18Q96ME1 805 aa6.99□□□□□ -1.29
CD44-217ENST00000525348 BRMS1Q9HCU9 246 aa6.99□□□□□ -1.29
CD44-217ENST00000525348 UBP1Q9NZI7 540 aa6.99□□□□□ -1.29
CD44-217ENST00000525348 KIAA1522Q9P206 1035 aaPredicted RBP6.99□□□□□ -1.29
CD44-217ENST00000525348 TMEM265A0A087WTH1 108 aa6.98□□□□□ -1.29
CD44-217ENST00000525348 CHURC1-FNTBB4DL54 471 aa6.98□□□□□ -1.29
CD44-217ENST00000525348 ZNF865P0CJ78 1059 aaPredicted RBP6.98□□□□□ -1.29
CD44-217ENST00000525348 VAMP1P23763 118 aa6.98□□□□□ -1.29
CD44-217ENST00000525348 AOC3Q16853 763 aa6.98□□□□□ -1.29
CD44-217ENST00000525348 ZNF394Q53GI3 561 aa6.98□□□□□ -1.29
CD44-217ENST00000525348 SFRP5Q5T4F7 317 aa6.98□□□□□ -1.29
CD44-217ENST00000525348 C22orf34Q6ZV56 151 aa6.98□□□□□ -1.29
CD44-217ENST00000525348 TP53INP2Q8IXH6 220 aa6.98□□□□□ -1.29
CD44-217ENST00000525348 FAM13CQ8NE31 585 aa6.98□□□□□ -1.29
CD44-217ENST00000525348 MISP3Q96FF7 219 aa6.98□□□□□ -1.29
CD44-217ENST00000525348 VAV3Q9UKW4 847 aa6.98□□□□□ -1.29
CD44-217ENST00000525348 PCDHGB7Q9Y5F8 929 aa6.98□□□□□ -1.29
CD44-217ENST00000525348 CAPN6Q9Y6Q1 641 aa6.98□□□□□ -1.29
CD44-217ENST00000525348 CBLL1Q75N03 491 aa6.97□□□□□ -1.29
CD44-217ENST00000525348 STK11IPQ8N1F8 1099 aa6.97□□□□□ -1.29
CD44-217ENST00000525348 EAF1Q96JC9 268 aaPredicted RBP6.97□□□□□ -1.29
CD44-217ENST00000525348 HRASLS5Q96KN8 279 aa6.97□□□□□ -1.29
CD44-217ENST00000525348 BCL11AQ9H165 835 aa6.97□□□□□ -1.29
CD44-217ENST00000525348 KLHL3Q9UH77 587 aa6.97□□□□□ -1.29
CD44-217ENST00000525348 COL17A1Q9UMD9 1497 aaPredicted RBP6.97□□□□□ -1.29
CD44-217ENST00000525348 GNAT3A8MTJ3 354 aa6.96□□□□□ -1.3
CD44-217ENST00000525348 CBX7O95931 251 aa6.96□□□□□ -1.3
CD44-217ENST00000525348 CWF19L2Q2TBE0 894 aaKnown RBP6.96□□□□□ -1.3
CD44-217ENST00000525348 MCTP1Q6DN14 999 aa6.96□□□□□ -1.3
CD44-217ENST00000525348 MFSD4AQ8N468 514 aa6.96□□□□□ -1.3
CD44-217ENST00000525348 CYB5D2Q8WUJ1 264 aa6.96□□□□□ -1.3
CD44-217ENST00000525348 MRRFQ96E11 262 aaKnown RBP6.96□□□□□ -1.3
CD44-217ENST00000525348 METTL5Q9NRN9 209 aaKnown RBP6.96□□□□□ -1.3
CD44-217ENST00000525348 SEMA3GQ9NS98 782 aa6.96□□□□□ -1.3
CD44-217ENST00000525348 ADAMTS6Q9UKP5 1117 aa6.96□□□□□ -1.3
CD44-217ENST00000525348 PCDHB14Q9Y5E9 798 aa6.96□□□□□ -1.3
CD44-217ENST00000525348 SNX11Q9Y5W9 270 aa6.96□□□□□ -1.3
CD44-217ENST00000525348 PITPNM2Q9BZ72 1349 aa6.96□□□□□ -1.3
CD44-217ENST00000525348 ROBO2Q9HCK4 1378 aa6.95□□□□□ -1.3
CD44-217ENST00000525348 FUT4P22083 530 aa6.95□□□□□ -1.3
CD44-217ENST00000525348 IRAK1P51617 712 aa6.95□□□□□ -1.3
CD44-217ENST00000525348 RACK1P63244 317 aaKnown RBP6.95□□□□□ -1.3
CD44-217ENST00000525348 SEZ6Q53EL9 994 aa6.95□□□□□ -1.3
CD44-217ENST00000525348 DIEXFQ68CQ4 756 aaKnown RBP6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms