RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 SUPT16HQ9Y5B9 1047 aaKnown RBP19.59■□□□□ 0.73
LSM1-205ENST00000523511 SLC4A4Q9Y6R1 1079 aa19.59■□□□□ 0.73
LSM1-205ENST00000523511 RNF113AO15541 343 aaKnown RBP19.58■□□□□ 0.72
LSM1-205ENST00000523511 GNAT2P19087 354 aa19.58■□□□□ 0.72
LSM1-205ENST00000523511 ABCB5Q2M3G0 1257 aa19.58■□□□□ 0.72
LSM1-205ENST00000523511 SH3D19Q5HYK7 790 aa19.58■□□□□ 0.72
LSM1-205ENST00000523511 SDR42E1Q8WUS8 393 aa19.58■□□□□ 0.72
LSM1-205ENST00000523511 ZBTB21Q9ULJ3 1066 aa19.58■□□□□ 0.72
LSM1-205ENST00000523511 GDF11O95390 407 aa19.57■□□□□ 0.72
LSM1-205ENST00000523511 FMNL1O95466 1100 aaPredicted RBP19.57■□□□□ 0.72
LSM1-205ENST00000523511 GH2P01242 217 aa19.57■□□□□ 0.72
LSM1-205ENST00000523511 PLCD1P51178 756 aa19.57■□□□□ 0.72
LSM1-205ENST00000523511 HMGCS2P54868 508 aa19.57■□□□□ 0.72
LSM1-205ENST00000523511 APPBP2Q92624 585 aa19.57■□□□□ 0.72
LSM1-205ENST00000523511 DNAJC18Q9H819 358 aa19.57■□□□□ 0.72
LSM1-205ENST00000523511 DOCK2Q92608 1830 aa19.57■□□□□ 0.72
LSM1-205ENST00000523511 CYP2C8P10632 490 aa19.56■□□□□ 0.72
LSM1-205ENST00000523511 GCLCP48506 637 aaPredicted RBP19.56■□□□□ 0.72
LSM1-205ENST00000523511 USP14P54578 494 aa19.56■□□□□ 0.72
LSM1-205ENST00000523511 RRP1BQ14684 758 aaKnown RBP19.56■□□□□ 0.72
LSM1-205ENST00000523511 RAB3GAP1Q15042 981 aa19.56■□□□□ 0.72
LSM1-205ENST00000523511 CCDC84Q86UT8 332 aaPredicted RBP19.56■□□□□ 0.72
LSM1-205ENST00000523511 PSMC4P43686 418 aa19.55■□□□□ 0.72
LSM1-205ENST00000523511 FCGRTP55899 365 aa19.55■□□□□ 0.72
LSM1-205ENST00000523511 MTMR2Q13614 643 aa19.55■□□□□ 0.72
LSM1-205ENST00000523511 GIMAP6Q6P9H5 292 aa19.55■□□□□ 0.72
LSM1-205ENST00000523511 USP17L2Q6R6M4 530 aa19.55■□□□□ 0.72
LSM1-205ENST00000523511 FEZ1Q99689 392 aa19.55■□□□□ 0.72
LSM1-205ENST00000523511 FSD1Q9BTV5 496 aa19.55■□□□□ 0.72
LSM1-205ENST00000523511 PUS7LQ9H0K6 701 aaKnown RBP19.55■□□□□ 0.72
LSM1-205ENST00000523511 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.55■□□□□ 0.72
LSM1-205ENST00000523511 MPHOSPH10O00566 681 aaKnown RBP19.54■□□□□ 0.72
LSM1-205ENST00000523511 IRX3P78415 501 aaPredicted RBP19.54■□□□□ 0.72
LSM1-205ENST00000523511 TSHZ3Q63HK5 1081 aa19.54■□□□□ 0.72
LSM1-205ENST00000523511 TICAM2Q86XR7 235 aa19.54■□□□□ 0.72
LSM1-205ENST00000523511 CCDC17Q96LX7 622 aa19.54■□□□□ 0.72
LSM1-205ENST00000523511 STRBPQ96SI9 672 aaKnown RBP19.54■□□□□ 0.72
LSM1-205ENST00000523511 NACAP1Q9BZK3 213 aa19.54■□□□□ 0.72
LSM1-205ENST00000523511 ZNF287Q9HBT7 754 aa19.54■□□□□ 0.72
LSM1-205ENST00000523511 ARPP21Q9UBL0 812 aaPredicted RBP19.54■□□□□ 0.72
LSM1-205ENST00000523511 LAMB1P07942 1786 aa19.54■□□□□ 0.72
LSM1-205ENST00000523511 USP17L12C9JPN9 530 aa19.53■□□□□ 0.72
LSM1-205ENST00000523511 USP17L21D6R901 530 aa19.53■□□□□ 0.72
LSM1-205ENST00000523511 PRKAB2O43741 272 aa19.53■□□□□ 0.72
LSM1-205ENST00000523511 APPP05067 770 aa19.53■□□□□ 0.72
LSM1-205ENST00000523511 RGS19P49795 217 aa19.53■□□□□ 0.72
LSM1-205ENST00000523511 GABPAQ06546 454 aa19.53■□□□□ 0.72
LSM1-205ENST00000523511 EXOC6Q8TAG9 804 aa19.53■□□□□ 0.72
LSM1-205ENST00000523511 PI4K2BQ8TCG2 481 aa19.53■□□□□ 0.72
LSM1-205ENST00000523511 GTF3C2Q8WUA4 911 aaPredicted RBP19.53■□□□□ 0.72
LSM1-205ENST00000523511 EVI5LQ96CN4 794 aa19.53■□□□□ 0.72
LSM1-205ENST00000523511 STAP2Q9UGK3 403 aa19.53■□□□□ 0.72
LSM1-205ENST00000523511 BCRP11274 1271 aa19.52■□□□□ 0.72
LSM1-205ENST00000523511 HOXA7P31268 230 aaPredicted RBP19.52■□□□□ 0.72
LSM1-205ENST00000523511 SHMT1P34896 483 aa19.52■□□□□ 0.72
LSM1-205ENST00000523511 MLLT1Q03111 559 aaPredicted RBP19.52■□□□□ 0.72
LSM1-205ENST00000523511 SLC9C1Q4G0N8 1177 aa19.52■□□□□ 0.72
LSM1-205ENST00000523511 TREML2Q5T2D2 321 aa19.52■□□□□ 0.72
LSM1-205ENST00000523511 C12orf60Q5U649 245 aa19.52■□□□□ 0.72
LSM1-205ENST00000523511 SLFNL1Q499Z3 407 aa19.51■□□□□ 0.71
LSM1-205ENST00000523511 TMEM179Q6ZVK1 233 aa19.51■□□□□ 0.71
LSM1-205ENST00000523511 SMC5Q8IY18 1101 aa19.51■□□□□ 0.71
LSM1-205ENST00000523511 RAET1EQ8TD07 263 aa19.51■□□□□ 0.71
LSM1-205ENST00000523511 SH2D4AQ9H788 454 aa19.51■□□□□ 0.71
LSM1-205ENST00000523511 ADGRA2Q96PE1 1338 aa19.51■□□□□ 0.71
LSM1-205ENST00000523511 PATL2C9JE40 543 aaKnown RBP19.5■□□□□ 0.71
LSM1-205ENST00000523511 PDE1AP54750 535 aa19.5■□□□□ 0.71
LSM1-205ENST00000523511 JAG1P78504 1218 aa19.5■□□□□ 0.71
LSM1-205ENST00000523511 FAM110CQ1W6H9 321 aa19.5■□□□□ 0.71
LSM1-205ENST00000523511 SBK1Q52WX2 424 aa19.5■□□□□ 0.71
LSM1-205ENST00000523511 B4GALNT3Q6L9W6 998 aa19.5■□□□□ 0.71
LSM1-205ENST00000523511 ANKRD13CQ8N6S4 541 aa19.5■□□□□ 0.71
LSM1-205ENST00000523511 OSBP2Q969R2 916 aa19.5■□□□□ 0.71
LSM1-205ENST00000523511 COA7Q96BR5 231 aa19.5■□□□□ 0.71
LSM1-205ENST00000523511 TMEM106CQ9BVX2 250 aa19.5■□□□□ 0.71
LSM1-205ENST00000523511 KIAA1683Q9H0B3 1180 aa19.5■□□□□ 0.71
LSM1-205ENST00000523511 ASCC2Q9H1I8 757 aaPredicted RBP19.5■□□□□ 0.71
LSM1-205ENST00000523511 SRRDQ9UH36 339 aa19.5■□□□□ 0.71
LSM1-205ENST00000523511 GPAA1O43292 621 aa19.49■□□□□ 0.71
LSM1-205ENST00000523511 SLC3A2P08195 630 aaKnown RBP19.49■□□□□ 0.71
LSM1-205ENST00000523511 TDO2P48775 406 aa19.49■□□□□ 0.71
LSM1-205ENST00000523511 CTR9Q6PD62 1173 aa19.49■□□□□ 0.71
LSM1-205ENST00000523511 CHD1LQ86WJ1 897 aa19.49■□□□□ 0.71
LSM1-205ENST00000523511 CCAR1Q8IX12 1150 aaKnown RBP19.49■□□□□ 0.71
LSM1-205ENST00000523511 OTUD7AQ8TE49 926 aaPredicted RBP19.49■□□□□ 0.71
LSM1-205ENST00000523511 TRIM47Q96LD4 638 aa19.49■□□□□ 0.71
LSM1-205ENST00000523511 LNPKQ9C0E8 428 aa19.49■□□□□ 0.71
LSM1-205ENST00000523511 MKNK2Q9HBH9 465 aa19.49■□□□□ 0.71
LSM1-205ENST00000523511 ARHGEF10LQ9HCE6 1279 aa19.49■□□□□ 0.71
LSM1-205ENST00000523511 DOCK1Q14185 1865 aa19.48■□□□□ 0.71
LSM1-205ENST00000523511 USP17L15C9J2P7 530 aa19.48■□□□□ 0.71
LSM1-205ENST00000523511 USP17L13C9JLJ4 530 aa19.48■□□□□ 0.71
LSM1-205ENST00000523511 USP17L11C9JVI0 530 aa19.48■□□□□ 0.71
LSM1-205ENST00000523511 USP17L18D6R9N7 530 aa19.48■□□□□ 0.71
LSM1-205ENST00000523511 USP17L22D6RA61 530 aa19.48■□□□□ 0.71
LSM1-205ENST00000523511 USP17L17D6RBQ6 530 aa19.48■□□□□ 0.71
LSM1-205ENST00000523511 USP17L19D6RCP7 530 aa19.48■□□□□ 0.71
LSM1-205ENST00000523511 USP17L20D6RJB6 530 aa19.48■□□□□ 0.71
LSM1-205ENST00000523511 TNPO2O14787 897 aaKnown RBP19.48■□□□□ 0.71
LSM1-205ENST00000523511 CYP2D6P10635 497 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms