RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 PPP2R5BQ15173 497 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 PTPN21Q16825 1174 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.58□□□□□ -0.56
MCF2-209ENST00000520602 PNMA1Q8ND90 353 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 PRIMPOLQ96LW4 560 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 QTRT2Q9H974 415 aaKnown RBP11.58□□□□□ -0.56
MCF2-209ENST00000520602 ATP8A2Q9NTI2 1148 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 TCP11L1Q9NUJ3 509 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 MAPK8IP1Q9UQF2 711 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 PCDHB6Q9Y5E3 794 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 STAT6P42226 847 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 POSTNQ15063 836 aa11.57□□□□□ -0.56
MCF2-209ENST00000520602 SF3B3Q15393 1217 aaKnown RBP11.57□□□□□ -0.56
MCF2-209ENST00000520602 GRAMD1CQ8IYS0 662 aa11.57□□□□□ -0.56
MCF2-209ENST00000520602 VGLL2Q8N8G2 317 aa11.57□□□□□ -0.56
MCF2-209ENST00000520602 PLCG2P16885 1265 aa11.57□□□□□ -0.56
MCF2-209ENST00000520602 SGMS1Q86VZ5 419 aa11.57□□□□□ -0.56
MCF2-209ENST00000520602 FMR1NBQ8N0W7 255 aaPredicted RBP11.57□□□□□ -0.56
MCF2-209ENST00000520602 ENAHQ8N8S7 591 aaPredicted RBP11.57□□□□□ -0.56
MCF2-209ENST00000520602 CCDC148Q8NFR7 591 aa11.57□□□□□ -0.56
MCF2-209ENST00000520602 MAP7D2Q96T17 732 aa11.57□□□□□ -0.56
MCF2-209ENST00000520602 SEMA3EO15041 775 aa11.57□□□□□ -0.56
MCF2-209ENST00000520602 RRP9O43818 475 aaKnown RBP11.57□□□□□ -0.56
MCF2-209ENST00000520602 SNW1Q13573 536 aaKnown RBP11.57□□□□□ -0.56
MCF2-209ENST00000520602 MSL1Q68DK7 614 aa11.57□□□□□ -0.56
MCF2-209ENST00000520602 KRBA2Q6ZNG9 492 aa11.57□□□□□ -0.56
MCF2-209ENST00000520602 BARGINQ6ZT62 677 aa11.57□□□□□ -0.56
MCF2-209ENST00000520602 CCDC150Q8NCX0 1101 aa11.57□□□□□ -0.56
MCF2-209ENST00000520602 OXER1Q8TDS5 423 aa11.57□□□□□ -0.56
MCF2-209ENST00000520602 CCDC12Q8WUD4 166 aaPredicted RBP11.57□□□□□ -0.56
MCF2-209ENST00000520602 DYNC1I1O14576 645 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 CCP110O43303 1012 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 KRT18P05783 430 aaKnown RBP11.56□□□□□ -0.56
MCF2-209ENST00000520602 BTDP43251 543 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 LETM2Q2VYF4 491 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 LONRF3Q496Y0 759 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 IQUBQ8NA54 791 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 NFE2L3Q9Y4A8 694 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 XDHP47989 1333 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 WDR19Q8NEZ3 1342 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 WDHD1O75717 1129 aaPredicted RBP11.56□□□□□ -0.56
MCF2-209ENST00000520602 IDEP14735 1019 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 NFIXQ14938 502 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 DOK7Q18PE1 504 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 CCDC178Q5BJE1 867 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 CACTINQ8WUQ7 758 aaKnown RBP11.56□□□□□ -0.56
MCF2-209ENST00000520602 RNF26Q9BY78 433 aaPredicted RBP11.56□□□□□ -0.56
MCF2-209ENST00000520602 AGXT2Q9BYV1 514 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 GPCPD1Q9NPB8 672 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.56□□□□□ -0.56
MCF2-209ENST00000520602 V9GYY5 206 aaPredicted RBP11.56□□□□□ -0.56
MCF2-209ENST00000520602 N4BP3O15049 544 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 URI1O94763 535 aaPredicted RBP11.56□□□□□ -0.56
MCF2-209ENST00000520602 HLA-DOAP06340 250 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 PARP1P09874 1014 aaKnown RBP11.56□□□□□ -0.56
MCF2-209ENST00000520602 ARID5BQ14865 1188 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 CTR9Q6PD62 1173 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 RASGRP4Q8TDF6 673 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 CSRNP2Q9H175 543 aa11.56□□□□□ -0.56
MCF2-209ENST00000520602 DCP1AQ9NPI6 582 aaPredicted RBP11.56□□□□□ -0.56
MCF2-209ENST00000520602 USP17L3A6NCW0 530 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 USP17L4A6NCW7 530 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 PPP6R2O75170 966 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 SCG2P13521 617 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 SCNN1DP51172 638 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 GRAPQ13588 217 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 VPS72Q15906 364 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 DTHD1Q6ZMT9 781 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 USP17L1Q7RTZ2 530 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 GRAPLQ8TC17 118 aaPredicted RBP11.55□□□□□ -0.56
MCF2-209ENST00000520602 EYA3Q99504 573 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 BLZF1Q9H2G9 400 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 FOXP1Q9H334 677 aaPredicted RBP11.55□□□□□ -0.56
MCF2-209ENST00000520602 FANCLQ9NW38 375 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 LEMD3Q9Y2U8 911 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 PNPLA7Q6ZV29 1317 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 MRC1P22897 1456 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 PTGDRQ13258 359 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 MTERF4Q7Z6M4 381 aaKnown RBP11.55□□□□□ -0.56
MCF2-209ENST00000520602 ADGRA1Q86SQ6 560 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 PDCL2Q8N4E4 241 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 SLC44A5Q8NCS7 719 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 RRP36Q96EU6 259 aaKnown RBP11.55□□□□□ -0.56
MCF2-209ENST00000520602 TRPC5Q9UL62 973 aaPredicted RBP11.55□□□□□ -0.56
MCF2-209ENST00000520602 KDM3BQ7LBC6 1761 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 ZNF142P52746 1687 aaPredicted RBP11.55□□□□□ -0.56
MCF2-209ENST00000520602 PLEKHG2Q9H7P9 1386 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 RBM6P78332 1123 aaKnown RBP11.55□□□□□ -0.56
MCF2-209ENST00000520602 BRIP1Q9BX63 1249 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 PARP3Q9Y6F1 533 aa11.55□□□□□ -0.56
MCF2-209ENST00000520602 TCP10Q12799 353 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 JAKMIP3Q5VZ66 844 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 DPP8Q6V1X1 898 aaPredicted RBP11.54□□□□□ -0.56
MCF2-209ENST00000520602 SH3RF3Q8TEJ3 882 aaPredicted RBP11.54□□□□□ -0.56
MCF2-209ENST00000520602 NSUN4Q96CB9 384 aaKnown RBP11.54□□□□□ -0.56
MCF2-209ENST00000520602 UIMC1Q96RL1 719 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 C6orf50Q9HD87 102 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 TCRBV5S4A2TA0A5A2 114 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 CLSTN1O94985 981 aa11.54□□□□□ -0.56
MCF2-209ENST00000520602 CDC25AP30304 524 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms