RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 KIAA1211LQ6NV74 962 aa10.59□□□□□ -0.71
LSM1-202ENST00000520286 MCATQ8IVS2 390 aaKnown RBP10.59□□□□□ -0.71
LSM1-202ENST00000520286 CRIM1Q9NZV1 1036 aa10.59□□□□□ -0.71
LSM1-202ENST00000520286 CELA2BP08218 269 aaPredicted RBP10.58□□□□□ -0.72
LSM1-202ENST00000520286 IBSPP21815 317 aaPredicted RBP10.58□□□□□ -0.72
LSM1-202ENST00000520286 POLR2BP30876 1174 aaKnown RBP10.58□□□□□ -0.72
LSM1-202ENST00000520286 SLC7A5Q01650 507 aa10.58□□□□□ -0.72
LSM1-202ENST00000520286 C16orf86Q6ZW13 317 aa10.58□□□□□ -0.72
LSM1-202ENST00000520286 KIAA0907Q7Z7F0 614 aaPredicted RBP10.58□□□□□ -0.72
LSM1-202ENST00000520286 FBXO11Q86XK2 927 aa10.58□□□□□ -0.72
LSM1-202ENST00000520286 ZCRB1Q8TBF4 217 aaKnown RBP10.58□□□□□ -0.72
LSM1-202ENST00000520286 TMEM87BQ96K49 555 aa10.58□□□□□ -0.72
LSM1-202ENST00000520286 RUSC1Q9BVN2 902 aa10.58□□□□□ -0.72
LSM1-202ENST00000520286 TMPRSS13Q9BYE2 586 aa10.58□□□□□ -0.72
LSM1-202ENST00000520286 IFT57Q9NWB7 429 aa10.58□□□□□ -0.72
LSM1-202ENST00000520286 PTCH2Q9Y6C5 1203 aa10.58□□□□□ -0.72
LSM1-202ENST00000520286 hCG_2014768A0A024R1R8 64 aa10.57□□□□□ -0.72
LSM1-202ENST00000520286 PPP1R12AO14974 1030 aaPredicted RBP10.57□□□□□ -0.72
LSM1-202ENST00000520286 DNAJC6O75061 913 aa10.57□□□□□ -0.72
LSM1-202ENST00000520286 DGKGP49619 791 aa10.57□□□□□ -0.72
LSM1-202ENST00000520286 GNPTABQ3T906 1256 aa10.57□□□□□ -0.72
LSM1-202ENST00000520286 ZNF787Q6DD87 383 aa10.57□□□□□ -0.72
LSM1-202ENST00000520286 LYPD4Q6UWN0 246 aa10.57□□□□□ -0.72
LSM1-202ENST00000520286 HID1Q8IV36 788 aa10.57□□□□□ -0.72
LSM1-202ENST00000520286 SLFN12Q8IYM2 578 aa10.57□□□□□ -0.72
LSM1-202ENST00000520286 PHACTR4Q8IZ21 702 aa10.57□□□□□ -0.72
LSM1-202ENST00000520286 RNF214Q8ND24 703 aa10.57□□□□□ -0.72
LSM1-202ENST00000520286 ZNF507Q8TCN5 953 aa10.57□□□□□ -0.72
LSM1-202ENST00000520286 KLHL6Q8WZ60 621 aa10.57□□□□□ -0.72
LSM1-202ENST00000520286 SPC25Q9HBM1 224 aa10.57□□□□□ -0.72
LSM1-202ENST00000520286 DISC1Q9NRI5 854 aa10.57□□□□□ -0.72
LSM1-202ENST00000520286 ZNF214Q9UL59 606 aaPredicted RBP10.57□□□□□ -0.72
LSM1-202ENST00000520286 PRKAB1Q9Y478 270 aa10.57□□□□□ -0.72
LSM1-202ENST00000520286 SUSD5O60279 629 aa10.56□□□□□ -0.72
LSM1-202ENST00000520286 IGBP1P78318 339 aa10.56□□□□□ -0.72
LSM1-202ENST00000520286 SLC6A19Q695T7 634 aa10.56□□□□□ -0.72
LSM1-202ENST00000520286 MRPL41Q8IXM3 137 aaKnown RBP10.56□□□□□ -0.72
LSM1-202ENST00000520286 FANCD2OSQ96PS1 177 aa10.56□□□□□ -0.72
LSM1-202ENST00000520286 MEGF11A6BM72 1044 aa10.55□□□□□ -0.72
LSM1-202ENST00000520286 DLL1O00548 723 aa10.55□□□□□ -0.72
LSM1-202ENST00000520286 WISP1O95388 367 aa10.55□□□□□ -0.72
LSM1-202ENST00000520286 NTF4P34130 210 aa10.55□□□□□ -0.72
LSM1-202ENST00000520286 CCNFP41002 786 aa10.55□□□□□ -0.72
LSM1-202ENST00000520286 GYS2P54840 703 aa10.55□□□□□ -0.72
LSM1-202ENST00000520286 RAC1P63000 192 aa10.55□□□□□ -0.72
LSM1-202ENST00000520286 NUTM2GQ5VZR2 741 aa10.55□□□□□ -0.72
LSM1-202ENST00000520286 FMR1NBQ8N0W7 255 aaPredicted RBP10.55□□□□□ -0.72
LSM1-202ENST00000520286 FEZ1Q99689 392 aa10.55□□□□□ -0.72
LSM1-202ENST00000520286 BRINP2Q9C0B6 783 aa10.55□□□□□ -0.72
LSM1-202ENST00000520286 EPN3Q9H201 632 aa10.55□□□□□ -0.72
LSM1-202ENST00000520286 ATXN3LQ9H3M9 355 aa10.55□□□□□ -0.72
LSM1-202ENST00000520286 FBRSQ9HAH7 460 aa10.55□□□□□ -0.72
LSM1-202ENST00000520286 RRAGCQ9HB90 399 aa10.55□□□□□ -0.72
LSM1-202ENST00000520286 AP4E1Q9UPM8 1137 aa10.55□□□□□ -0.72
LSM1-202ENST00000520286 A0A0A0MRY4 1105 aa10.54□□□□□ -0.72
LSM1-202ENST00000520286 HOXB4P17483 251 aaPredicted RBP10.54□□□□□ -0.72
LSM1-202ENST00000520286 SLC10A6Q3KNW5 377 aa10.54□□□□□ -0.72
LSM1-202ENST00000520286 BBS9Q3SYG4 887 aa10.54□□□□□ -0.72
LSM1-202ENST00000520286 TAF7LQ5H9L4 462 aa10.54□□□□□ -0.72
LSM1-202ENST00000520286 CDC37L1Q7L3B6 337 aa10.54□□□□□ -0.72
LSM1-202ENST00000520286 DHRS1Q96LJ7 313 aa10.54□□□□□ -0.72
LSM1-202ENST00000520286 KIF2CQ99661 725 aa10.54□□□□□ -0.72
LSM1-202ENST00000520286 SPATA9Q9BWV2 254 aa10.54□□□□□ -0.72
LSM1-202ENST00000520286 CYP4F12Q9HCS2 524 aa10.54□□□□□ -0.72
LSM1-202ENST00000520286 COL4A3BPQ9Y5P4 624 aa10.54□□□□□ -0.72
LSM1-202ENST00000520286 RGS13O14921 159 aa10.53□□□□□ -0.72
LSM1-202ENST00000520286 ADH5P11766 374 aa10.53□□□□□ -0.72
LSM1-202ENST00000520286 TTLL4Q14679 1199 aa10.53□□□□□ -0.72
LSM1-202ENST00000520286 TKFCQ3LXA3 575 aa10.53□□□□□ -0.72
LSM1-202ENST00000520286 KIAA1211Q6ZU35 1233 aa10.53□□□□□ -0.72
LSM1-202ENST00000520286 ACAD11Q709F0 780 aa10.53□□□□□ -0.72
LSM1-202ENST00000520286 SLC6A18Q96N87 628 aa10.53□□□□□ -0.72
LSM1-202ENST00000520286 RNF208Q9H0X6 261 aa10.53□□□□□ -0.72
LSM1-202ENST00000520286 TMX1Q9H3N1 280 aa10.53□□□□□ -0.72
LSM1-202ENST00000520286 NOP58Q9Y2X3 529 aaKnown RBP10.53□□□□□ -0.72
LSM1-202ENST00000520286 IQCA1LA6NCM1 817 aa10.52□□□□□ -0.73
LSM1-202ENST00000520286 ASMTLO95671 621 aa10.52□□□□□ -0.73
LSM1-202ENST00000520286 FAM153BP0C7A2 387 aa10.52□□□□□ -0.73
LSM1-202ENST00000520286 ANAPC15P60006 121 aa10.52□□□□□ -0.73
LSM1-202ENST00000520286 TCEA2Q15560 299 aa10.52□□□□□ -0.73
LSM1-202ENST00000520286 NKG7Q16617 165 aa10.52□□□□□ -0.73
LSM1-202ENST00000520286 TMEM192Q8IY95 271 aa10.52□□□□□ -0.73
LSM1-202ENST00000520286 LRRC47Q8N1G4 583 aaKnown RBP10.52□□□□□ -0.73
LSM1-202ENST00000520286 KCT2Q8NC54 265 aa10.52□□□□□ -0.73
LSM1-202ENST00000520286 SMG8Q8ND04 991 aaKnown RBP10.52□□□□□ -0.73
LSM1-202ENST00000520286 ZSWIM2Q8NEG5 633 aa10.52□□□□□ -0.73
LSM1-202ENST00000520286 CCDC74BQ96LY2 380 aa10.52□□□□□ -0.73
LSM1-202ENST00000520286 DPH2Q9BQC3 489 aaPredicted RBP10.52□□□□□ -0.73
LSM1-202ENST00000520286 SUGCTQ9HAC7 445 aa10.52□□□□□ -0.73
LSM1-202ENST00000520286 CWC22Q9HCG8 908 aaKnown RBP10.52□□□□□ -0.73
LSM1-202ENST00000520286 NEFMP07197 916 aa10.51□□□□□ -0.73
LSM1-202ENST00000520286 HCLS1P14317 486 aaPredicted RBP10.51□□□□□ -0.73
LSM1-202ENST00000520286 GBP1P32455 592 aa10.51□□□□□ -0.73
LSM1-202ENST00000520286 PMS1P54277 932 aaKnown RBP10.51□□□□□ -0.73
LSM1-202ENST00000520286 SOX4Q06945 474 aaPredicted RBP10.51□□□□□ -0.73
LSM1-202ENST00000520286 SYNPOQ8N3V7 929 aa10.51□□□□□ -0.73
LSM1-202ENST00000520286 SUCOQ9UBS9 1254 aaKnown RBP10.51□□□□□ -0.73
LSM1-202ENST00000520286 UBOX5O94941 541 aa10.5□□□□□ -0.73
LSM1-202ENST00000520286 SLBPQ14493 270 aaKnown RBP eCLIP10.5□□□□□ -0.73
LSM1-202ENST00000520286 LONRF2Q1L5Z9 754 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms