RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 TRPM4Q8TD43 1214 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 CRBNQ96SW2 442 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 SRRTQ9BXP5 876 aaKnown RBP6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 LRRC3Q9BY71 257 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 MIR1-1HGQ9H1L0 117 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 NMRK2Q9NPI5 230 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 GINM1Q9NU53 330 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 ZFATQ9P243 1243 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 PRKAG3Q9UGI9 489 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 GPN3Q9UHW5 284 aaPredicted RBP6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 CYP8B1Q9UNU6 501 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 TOPAZ1Q8N9V7 1692 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 SPATA31A3Q5VYP0 1347 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 LOC102724428A0A0B4J2F2 783 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 PF4P02776 101 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 IBSPP21815 317 aaPredicted RBP6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 CTCFP49711 727 aaPredicted RBP6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 ZNF165P49910 485 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 SIK1P57059 783 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 MAP3K10Q02779 954 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 RAB33AQ14088 237 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 GRIN2CQ14957 1233 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 MAP3K11Q16584 847 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 RNF187Q5TA31 235 aaPredicted RBP6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 EGFLAMQ63HQ2 1017 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 ANKS3Q6ZW76 656 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 TRIM46Q7Z4K8 759 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 CACTIN-AS1Q8N1I8 211 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 BHMTQ93088 406 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 NXPE3Q969Y0 559 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 SRPK1Q96SB4 655 aaKnown RBP6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 EMILIN2Q9BXX0 1053 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 PBX4Q9BYU1 374 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 PIF1Q9H611 641 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 SLC52A1Q9NWF4 448 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 ABCA3Q99758 1704 aa6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 PLSCR1O15162 318 aa6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 BPNT1O95861 308 aa6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 MPP2Q14168 576 aa6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 BSNDQ8WZ55 320 aa6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 CLEC4MQ9H2X3 399 aaPredicted RBP6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 ZNF576Q9H609 170 aa6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 SEC31BQ9NQW1 1179 aa6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 STRN4Q9NRL3 753 aa6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 SLC35F4A4IF30 521 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 ENPP3O14638 875 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 ENC1O14682 589 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 FBXO24O75426 580 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 CELA3AP09093 270 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 GARTP22102 1010 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 GRIA4P48058 902 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 LBX1P52954 281 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 EIF6P56537 245 aaKnown RBP6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 FAM160A1Q05DH4 1040 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 REXO1Q8N1G1 1221 aaKnown RBP6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 MICALL1Q8N3F8 863 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 ASAP3Q8TDY4 903 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 GATAD2BQ8WXI9 593 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 KIFC2Q96AC6 838 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 TRIM47Q96LD4 638 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 CNTNAP3BQ96NU0 1288 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 NSUN5Q96P11 429 aaKnown RBP6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 TRIM56Q9BRZ2 755 aaKnown RBP6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 CNTNAP3Q9BZ76 1288 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 SENP2Q9HC62 589 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 AVENQ9NQS1 362 aaPredicted RBP6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 NDFIP2Q9NV92 336 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 PRR12Q9ULL5 1215 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 COL14A1Q05707 1796 aaKnown RBP6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 KLF4O43474 513 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 BNIP3LO60238 219 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 NME2P22392 152 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 PTSQ03393 145 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 ANAPC16Q96DE5 110 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 FERD3LQ96RJ6 166 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 BRINP2Q9C0B6 783 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 SLKQ9H2G2 1235 aaPredicted RBP6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 UBP1Q9NZI7 540 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 TLR6Q9Y2C9 796 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 CCDC144AA2RUR9 1427 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 SBNO2Q9Y2G9 1366 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 SPATA31A1Q5TZJ5 1347 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 PTPRAP18433 802 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 TFE3P19532 575 aaPredicted RBP6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 FGFR3P22607 806 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 ETFBP38117 255 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 IFRD2Q12894 506 aaPredicted RBP6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 UBAP2LQ14157 1087 aaKnown RBP6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 TXNRD1Q16881 649 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 KRT28Q7Z3Y7 464 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 DEPDC7Q96QD5 511 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 CCDC113Q9H0I3 377 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 PRKAB1Q9Y478 270 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 TECPR2O15040 1411 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 TNS3Q68CZ2 1445 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 RRBP1Q9P2E9 1410 aaKnown RBP6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 NFKBIEO00221 500 aa6.55□□□□□ -1.36
HMGB1P23-201ENST00000518743 SIN3BO75182 1162 aa6.55□□□□□ -1.36
HMGB1P23-201ENST00000518743 B3GALT4O96024 378 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms