RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 MNX1P50219 401 aaPredicted RBP24.12■■□□□ 1.45
USP53-208ENST00000514305 CAP1Q01518 475 aa24.12■■□□□ 1.45
USP53-208ENST00000514305 SLC9C1Q4G0N8 1177 aa24.12■■□□□ 1.45
USP53-208ENST00000514305 MCMDC2Q4G0Z9 681 aa24.12■■□□□ 1.45
USP53-208ENST00000514305 NBPF11Q86T75 865 aa24.12■■□□□ 1.45
USP53-208ENST00000514305 ATRNL1Q5VV63 1379 aa24.12■■□□□ 1.45
USP53-208ENST00000514305 ZSWIM8A7E2V4 1837 aa24.12■■□□□ 1.45
USP53-208ENST00000514305 CENPFP49454 3210 aa24.12■■□□□ 1.45
USP53-208ENST00000514305 PDHXO00330 501 aa24.11■■□□□ 1.45
USP53-208ENST00000514305 EIF5BO60841 1220 aaKnown RBP24.11■■□□□ 1.45
USP53-208ENST00000514305 USP5P45974 858 aa24.11■■□□□ 1.45
USP53-208ENST00000514305 LACTBP83111 547 aaPredicted RBP24.11■■□□□ 1.45
USP53-208ENST00000514305 PRPF38BQ5VTL8 546 aaKnown RBP24.11■■□□□ 1.45
USP53-208ENST00000514305 SCYL3Q8IZE3 742 aa24.11■■□□□ 1.45
USP53-208ENST00000514305 CXCL11O14625 94 aa24.1■■□□□ 1.45
USP53-208ENST00000514305 GNRH1P01148 92 aa24.1■■□□□ 1.45
USP53-208ENST00000514305 ADGRA1Q86SQ6 560 aa24.1■■□□□ 1.45
USP53-208ENST00000514305 SKAP1Q86WV1 359 aa24.1■■□□□ 1.45
USP53-208ENST00000514305 DDX4Q9NQI0 724 aaKnown RBP24.1■■□□□ 1.45
USP53-208ENST00000514305 PTCH2Q9Y6C5 1203 aa24.1■■□□□ 1.45
USP53-208ENST00000514305 POTEFA5A3E0 1075 aa24.09■■□□□ 1.45
USP53-208ENST00000514305 DDTLA6NHG4 134 aaPredicted RBP24.09■■□□□ 1.45
USP53-208ENST00000514305 PHF20L1A8MW92 1017 aa24.09■■□□□ 1.45
USP53-208ENST00000514305 MBD4O95243 580 aa24.09■■□□□ 1.45
USP53-208ENST00000514305 RHBDL3P58872 404 aa24.09■■□□□ 1.45
USP53-208ENST00000514305 SH3BP5LQ7L8J4 393 aa24.09■■□□□ 1.45
USP53-208ENST00000514305 AMOTL1Q8IY63 956 aa24.09■■□□□ 1.45
USP53-208ENST00000514305 OSBP2Q969R2 916 aa24.09■■□□□ 1.45
USP53-208ENST00000514305 RIOK1Q9BRS2 568 aaKnown RBP24.09■■□□□ 1.45
USP53-208ENST00000514305 PUS7LQ9H0K6 701 aaKnown RBP24.09■■□□□ 1.45
USP53-208ENST00000514305 ZHX2Q9Y6X8 837 aa24.09■■□□□ 1.45
USP53-208ENST00000514305 RAD50Q92878 1312 aa24.09■■□□□ 1.45
USP53-208ENST00000514305 PTPRFP10586 1907 aa24.08■■□□□ 1.45
USP53-208ENST00000514305 CDC45O75419 566 aa24.08■■□□□ 1.45
USP53-208ENST00000514305 DYNLL1P63167 89 aaKnown RBP24.08■■□□□ 1.45
USP53-208ENST00000514305 CWC27Q6UX04 472 aaKnown RBP24.08■■□□□ 1.45
USP53-208ENST00000514305 C17orf99Q6UX52 265 aa24.08■■□□□ 1.45
USP53-208ENST00000514305 SH3RF3Q8TEJ3 882 aaPredicted RBP24.08■■□□□ 1.45
USP53-208ENST00000514305 PARK7Q99497 189 aaKnown RBP24.08■■□□□ 1.45
USP53-208ENST00000514305 TMEM106CQ9BVX2 250 aa24.08■■□□□ 1.45
USP53-208ENST00000514305 NACAP1Q9BZK3 213 aa24.08■■□□□ 1.45
USP53-208ENST00000514305 ARHGAP39Q9C0H5 1083 aa24.08■■□□□ 1.45
USP53-208ENST00000514305 ATP8A2Q9NTI2 1148 aa24.08■■□□□ 1.45
USP53-208ENST00000514305 CPA4Q9UI42 421 aa24.08■■□□□ 1.45
USP53-208ENST00000514305 GPAA1O43292 621 aa24.07■■□□□ 1.44
USP53-208ENST00000514305 CTNND1O60716 968 aaKnown RBP24.07■■□□□ 1.44
USP53-208ENST00000514305 PTPRAP18433 802 aa24.07■■□□□ 1.44
USP53-208ENST00000514305 CHMLP26374 656 aa24.07■■□□□ 1.44
USP53-208ENST00000514305 PRMT2P55345 433 aa24.07■■□□□ 1.44
USP53-208ENST00000514305 MAP3K10Q02779 954 aa24.07■■□□□ 1.44
USP53-208ENST00000514305 NMIQ13287 307 aaPredicted RBP24.07■■□□□ 1.44
USP53-208ENST00000514305 FASTKD5Q7L8L6 764 aaKnown RBP24.07■■□□□ 1.44
USP53-208ENST00000514305 ZNF333Q96JL9 665 aa24.07■■□□□ 1.44
USP53-208ENST00000514305 ARMT1Q9H993 441 aa24.07■■□□□ 1.44
USP53-208ENST00000514305 SLC4A4Q9Y6R1 1079 aa24.07■■□□□ 1.44
USP53-208ENST00000514305 MYH7P12883 1935 aa24.07■■□□□ 1.44
USP53-208ENST00000514305 KIAA0100Q14667 2235 aaKnown RBP24.07■■□□□ 1.44
USP53-208ENST00000514305 PHIPQ8WWQ0 1821 aa24.06■■□□□ 1.44
USP53-208ENST00000514305 GIMAP6Q6P9H5 292 aa24.06■■□□□ 1.44
USP53-208ENST00000514305 TGFBRAP1Q8WUH2 860 aa24.06■■□□□ 1.44
USP53-208ENST00000514305 STRBPQ96SI9 672 aaKnown RBP24.06■■□□□ 1.44
USP53-208ENST00000514305 DHX36Q9H2U1 1008 aaKnown RBP24.06■■□□□ 1.44
USP53-208ENST00000514305 MYO5AQ9Y4I1 1855 aaKnown RBP24.06■■□□□ 1.44
USP53-208ENST00000514305 ATAD5Q96QE3 1844 aa24.05■■□□□ 1.44
USP53-208ENST00000514305 PATL2C9JE40 543 aaKnown RBP24.05■■□□□ 1.44
USP53-208ENST00000514305 MOGSQ13724 837 aa24.05■■□□□ 1.44
USP53-208ENST00000514305 LCORLQ8N3X6 602 aa24.05■■□□□ 1.44
USP53-208ENST00000514305 FAM227BQ96M60 508 aa24.05■■□□□ 1.44
USP53-208ENST00000514305 COL2A1P02458 1487 aaPredicted RBP24.05■■□□□ 1.44
USP53-208ENST00000514305 A0A0G2JLL6 359 aaPredicted RBP24.04■■□□□ 1.44
USP53-208ENST00000514305 ECM2O94769 699 aaPredicted RBP24.04■■□□□ 1.44
USP53-208ENST00000514305 SLC34A2O95436 690 aa24.04■■□□□ 1.44
USP53-208ENST00000514305 APPP05067 770 aa24.04■■□□□ 1.44
USP53-208ENST00000514305 GADL1Q6ZQY3 521 aa24.04■■□□□ 1.44
USP53-208ENST00000514305 KIAA1211Q6ZU35 1233 aa24.04■■□□□ 1.44
USP53-208ENST00000514305 PRRT2Q7Z6L0 340 aaPredicted RBP24.04■■□□□ 1.44
USP53-208ENST00000514305 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.04■■□□□ 1.44
USP53-208ENST00000514305 AFG3L2Q9Y4W6 797 aa24.04■■□□□ 1.44
USP53-208ENST00000514305 MGAMO43451 1857 aa24.04■■□□□ 1.44
USP53-208ENST00000514305 CCDC171Q6TFL3 1326 aa24.04■■□□□ 1.44
USP53-208ENST00000514305 A0A0D9SFI3 127 aa24.03■■□□□ 1.44
USP53-208ENST00000514305 M0R2C6 588 aa24.03■■□□□ 1.44
USP53-208ENST00000514305 TBC1D12O60347 775 aa24.03■■□□□ 1.44
USP53-208ENST00000514305 FMNL1O95466 1100 aaPredicted RBP24.03■■□□□ 1.44
USP53-208ENST00000514305 HLA-DOAP06340 250 aa24.03■■□□□ 1.44
USP53-208ENST00000514305 HOXD10P28358 340 aa24.03■■□□□ 1.44
USP53-208ENST00000514305 PSMC4P43686 418 aa24.03■■□□□ 1.44
USP53-208ENST00000514305 SLC4A8Q2Y0W8 1093 aa24.03■■□□□ 1.44
USP53-208ENST00000514305 SLFNL1Q499Z3 407 aa24.03■■□□□ 1.44
USP53-208ENST00000514305 OSBPL5Q9H0X9 879 aaPredicted RBP24.03■■□□□ 1.44
USP53-208ENST00000514305 ADGRA2Q96PE1 1338 aa24.03■■□□□ 1.44
USP53-208ENST00000514305 GPAT2Q6NUI2 795 aa24.02■■□□□ 1.44
USP53-208ENST00000514305 TTC6Q86TZ1 520 aa24.02■■□□□ 1.44
USP53-208ENST00000514305 SEC62Q99442 399 aaKnown RBP24.02■■□□□ 1.44
USP53-208ENST00000514305 CDK5RAP2Q96SN8 1893 aa24.01■■□□□ 1.43
USP53-208ENST00000514305 CHGBP05060 677 aa24.01■■□□□ 1.43
USP53-208ENST00000514305 CYP2C8P10632 490 aa24.01■■□□□ 1.43
USP53-208ENST00000514305 EN2P19622 333 aaPredicted RBP24.01■■□□□ 1.43
USP53-208ENST00000514305 MAPKAPK5Q8IW41 473 aa24.01■■□□□ 1.43
USP53-208ENST00000514305 SH3TC2Q8TF17 1288 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms