RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 COPRSQ9NQ92 184 aa13.56□□□□□ -0.24
DDX41-216ENST00000513562 PA2G4Q9UQ80 394 aaKnown RBP13.56□□□□□ -0.24
DDX41-216ENST00000513562 DOCK3Q8IZD9 2030 aa13.56□□□□□ -0.24
DDX41-216ENST00000513562 C19orf81C9J6K1 198 aa13.55□□□□□ -0.24
DDX41-216ENST00000513562 LDHCP07864 332 aa13.55□□□□□ -0.24
DDX41-216ENST00000513562 UBTFL1P0CB47 393 aaPredicted RBP13.55□□□□□ -0.24
DDX41-216ENST00000513562 TIMM10P62072 90 aa13.55□□□□□ -0.24
DDX41-216ENST00000513562 JAG1P78504 1218 aa13.55□□□□□ -0.24
DDX41-216ENST00000513562 MVPQ14764 893 aaKnown RBP13.55□□□□□ -0.24
DDX41-216ENST00000513562 CCAR1Q8IX12 1150 aaKnown RBP13.55□□□□□ -0.24
DDX41-216ENST00000513562 XAGE2Q96GT9 111 aa13.55□□□□□ -0.24
DDX41-216ENST00000513562 SEMA6BQ9H3T3 888 aa13.55□□□□□ -0.24
DDX41-216ENST00000513562 PI4KBQ9UBF8 816 aa13.55□□□□□ -0.24
DDX41-216ENST00000513562 DDX20Q9UHI6 824 aaKnown RBP13.55□□□□□ -0.24
DDX41-216ENST00000513562 ZNF521Q96K83 1311 aa13.55□□□□□ -0.24
DDX41-216ENST00000513562 MAST2Q6P0Q8 1798 aa13.55□□□□□ -0.24
DDX41-216ENST00000513562 MYH2Q9UKX2 1941 aa13.54□□□□□ -0.24
DDX41-216ENST00000513562 A0A1B0GUL7 405 aa13.54□□□□□ -0.24
DDX41-216ENST00000513562 USP17L10C9JJH3 530 aa13.54□□□□□ -0.24
DDX41-216ENST00000513562 DNM1LO00429 736 aa13.54□□□□□ -0.24
DDX41-216ENST00000513562 MSCO60682 206 aa13.54□□□□□ -0.24
DDX41-216ENST00000513562 ATN1P54259 1190 aaPredicted RBP13.54□□□□□ -0.24
DDX41-216ENST00000513562 MAP2K5Q13163 448 aa13.54□□□□□ -0.24
DDX41-216ENST00000513562 METTL16Q86W50 562 aaKnown RBP13.54□□□□□ -0.24
DDX41-216ENST00000513562 TEX11Q8IYF3 940 aa13.54□□□□□ -0.24
DDX41-216ENST00000513562 LPAR1Q92633 364 aa13.54□□□□□ -0.24
DDX41-216ENST00000513562 PAGR1Q9BTK6 254 aa13.54□□□□□ -0.24
DDX41-216ENST00000513562 DHX36Q9H2U1 1008 aaKnown RBP13.54□□□□□ -0.24
DDX41-216ENST00000513562 DNAJC18Q9H819 358 aa13.54□□□□□ -0.24
DDX41-216ENST00000513562 GINM1Q9NU53 330 aa13.54□□□□□ -0.24
DDX41-216ENST00000513562 HMG20BQ9P0W2 317 aa13.54□□□□□ -0.24
DDX41-216ENST00000513562 PRKAG2Q9UGJ0 569 aa13.54□□□□□ -0.24
DDX41-216ENST00000513562 RTP1P59025 263 aa13.53□□□□□ -0.24
DDX41-216ENST00000513562 SHHQ15465 462 aa13.53□□□□□ -0.24
DDX41-216ENST00000513562 SHROOM1Q2M3G4 852 aaPredicted RBP13.53□□□□□ -0.24
DDX41-216ENST00000513562 MFSD14CQ5VZR4 134 aa13.53□□□□□ -0.24
DDX41-216ENST00000513562 PI16Q6UXB8 463 aa13.53□□□□□ -0.24
DDX41-216ENST00000513562 MYLIPQ8WY64 445 aa13.53□□□□□ -0.24
DDX41-216ENST00000513562 EDC3Q96F86 508 aaKnown RBP13.53□□□□□ -0.24
DDX41-216ENST00000513562 TTYH1Q9H313 450 aaPredicted RBP13.53□□□□□ -0.24
DDX41-216ENST00000513562 FLRT1Q9NZU1 646 aa13.53□□□□□ -0.24
DDX41-216ENST00000513562 AKAP2Q9Y2D5 859 aa13.53□□□□□ -0.24
DDX41-216ENST00000513562 CNMDO75829 334 aa13.52□□□□□ -0.25
DDX41-216ENST00000513562 HOXC6P09630 235 aa13.52□□□□□ -0.25
DDX41-216ENST00000513562 SMAD3P84022 425 aaKnown RBP13.52□□□□□ -0.25
DDX41-216ENST00000513562 C9orf50Q5SZB4 431 aa13.52□□□□□ -0.25
DDX41-216ENST00000513562 TBC1D9Q6ZT07 1266 aa13.52□□□□□ -0.25
DDX41-216ENST00000513562 SPATA5Q8NB90 893 aa13.52□□□□□ -0.25
DDX41-216ENST00000513562 SH3RF3Q8TEJ3 882 aaPredicted RBP13.52□□□□□ -0.25
DDX41-216ENST00000513562 SYMPKQ92797 1274 aaKnown RBP13.52□□□□□ -0.25
DDX41-216ENST00000513562 EMILIN3Q9NT22 766 aa13.52□□□□□ -0.25
DDX41-216ENST00000513562 ZBTB21Q9ULJ3 1066 aa13.52□□□□□ -0.25
DDX41-216ENST00000513562 RABGAP1Q9Y3P9 1069 aa13.52□□□□□ -0.25
DDX41-216ENST00000513562 GLRX3O76003 335 aaKnown RBP13.51□□□□□ -0.25
DDX41-216ENST00000513562 GDF11O95390 407 aa13.51□□□□□ -0.25
DDX41-216ENST00000513562 IGHA2P01877 340 aa13.51□□□□□ -0.25
DDX41-216ENST00000513562 CCNA1P78396 465 aa13.51□□□□□ -0.25
DDX41-216ENST00000513562 TFCP2Q12800 502 aa13.51□□□□□ -0.25
DDX41-216ENST00000513562 USP17L2Q6R6M4 530 aa13.51□□□□□ -0.25
DDX41-216ENST00000513562 CWC22Q9HCG8 908 aaKnown RBP13.51□□□□□ -0.25
DDX41-216ENST00000513562 RAI14Q9P0K7 980 aa13.51□□□□□ -0.25
DDX41-216ENST00000513562 ATP11BQ9Y2G3 1177 aa13.51□□□□□ -0.25
DDX41-216ENST00000513562 FLT1P17948 1338 aa13.5□□□□□ -0.25
DDX41-216ENST00000513562 SLC15A5A6NIM6 579 aa13.5□□□□□ -0.25
DDX41-216ENST00000513562 FOSL2P15408 326 aa13.5□□□□□ -0.25
DDX41-216ENST00000513562 PTPREP23469 700 aa13.5□□□□□ -0.25
DDX41-216ENST00000513562 ARID4AP29374 1257 aaPredicted RBP13.5□□□□□ -0.25
DDX41-216ENST00000513562 GRB14Q14449 540 aa13.5□□□□□ -0.25
DDX41-216ENST00000513562 SNX17Q15036 470 aa13.5□□□□□ -0.25
DDX41-216ENST00000513562 FOXP4Q8IVH2 680 aaPredicted RBP13.5□□□□□ -0.25
DDX41-216ENST00000513562 TRPV1Q8NER1 839 aa13.5□□□□□ -0.25
DDX41-216ENST00000513562 C12orf42Q96LP6 360 aa13.5□□□□□ -0.25
DDX41-216ENST00000513562 HDAC5Q9UQL6 1122 aa13.5□□□□□ -0.25
DDX41-216ENST00000513562 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.5□□□□□ -0.25
DDX41-216ENST00000513562 LTBP2Q14767 1821 aa13.5□□□□□ -0.25
DDX41-216ENST00000513562 ATAD5Q96QE3 1844 aa13.5□□□□□ -0.25
DDX41-216ENST00000513562 SIPA1L1O43166 1804 aa13.49□□□□□ -0.25
DDX41-216ENST00000513562 TMEM265A0A087WTH1 108 aa13.49□□□□□ -0.25
DDX41-216ENST00000513562 CYBAP13498 195 aa13.49□□□□□ -0.25
DDX41-216ENST00000513562 PLCG2P16885 1265 aa13.49□□□□□ -0.25
DDX41-216ENST00000513562 CNGA1P29973 690 aa13.49□□□□□ -0.25
DDX41-216ENST00000513562 CYP2C19P33261 490 aa13.49□□□□□ -0.25
DDX41-216ENST00000513562 ATP2B2Q01814 1243 aa13.49□□□□□ -0.25
DDX41-216ENST00000513562 ALDH1L2Q3SY69 923 aa13.49□□□□□ -0.25
DDX41-216ENST00000513562 SLC39A5Q6ZMH5 540 aa13.49□□□□□ -0.25
DDX41-216ENST00000513562 CRACR2BQ8N4Y2 399 aaPredicted RBP13.49□□□□□ -0.25
DDX41-216ENST00000513562 NPLOC4Q8TAT6 608 aa13.49□□□□□ -0.25
DDX41-216ENST00000513562 BADQ92934 168 aa13.49□□□□□ -0.25
DDX41-216ENST00000513562 NOL10Q9BSC4 688 aaKnown RBP13.49□□□□□ -0.25
DDX41-216ENST00000513562 AATFQ9NY61 560 aaKnown RBP eCLIP13.49□□□□□ -0.25
DDX41-216ENST00000513562 NDUFB9Q9Y6M9 179 aa13.49□□□□□ -0.25
DDX41-216ENST00000513562 USP17L15C9J2P7 530 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 USP17L13C9JLJ4 530 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 USP17L11C9JVI0 530 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 USP17L18D6R9N7 530 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 USP17L22D6RA61 530 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 USP17L17D6RBQ6 530 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 USP17L19D6RCP7 530 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 USP17L20D6RJB6 530 aa13.48□□□□□ -0.25
DDX41-216ENST00000513562 BAG3O95817 575 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms