RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 ZNF654Q8IZM8 581 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 UBAC1Q9BSL1 405 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 CARD10Q9BWT7 1032 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 TEX13AQ9BXU3 409 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 PUF60Q9UHX1 559 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 A0A087X0B3 334 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 SARSP49591 514 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 AKAP17AQ02040 695 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 ALX1Q15699 326 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 FCHSD1Q86WN1 690 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 SLC4A9Q96Q91 983 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 PARD6BQ9BYG5 372 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 NACAP1Q9BZK3 213 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 DACH1Q9UI36 760 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 DEXIO95424 95 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 SLC5A1P13866 664 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 NOM1Q5C9Z4 860 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 ZNF512BQ96KM6 892 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 FOXP1Q9H334 677 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 CNNM2Q9H8M5 875 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 SRPRBQ9Y5M8 271 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 GLI3P10071 1580 aa10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 KCPQ6ZWJ8 1503 aa10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 ACTN4O43707 911 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 TFRCP02786 760 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 CD44P16070 742 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 GYS2P54840 703 aa10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 PPFIBP1Q86W92 1011 aa10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 CCDC66A2RUB6 948 aa10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 AKR1B15C9JRZ8 316 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 RBL2Q08999 1139 aa10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 NR1I3Q14994 352 aa10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 ZNF174Q15697 407 aa10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 RAD9BQ6WBX8 426 aa10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 BRINP3Q76B58 766 aa10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 IGSF22Q8N9C0 903 aa10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 CDHR2Q9BYE9 1310 aa10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 STK36Q9NRP7 1315 aa10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 WNT7AO00755 349 aa10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 DZIP3Q86Y13 1208 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 NEK11Q8NG66 645 aa10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 V9GY48 417 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-215ENST00000512632 CYP2D7A0A087X1C5 515 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 TRIM75PA6NK02 468 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 TBC1D8O95759 1140 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 CC2D1AQ6P1N0 951 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 MRFAP1Q9Y605 127 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 CYP7A1P22680 504 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 SHISA4Q96DD7 197 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 ARFGAP3Q9NP61 516 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 COL18A1P39060 1754 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 CCDC196A0A1B0GTZ2 297 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 GOLGA6L9A6NEM1 432 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 MYO1BO43795 1136 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 CCDC175P0C221 793 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 FGFR2P21802 821 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 CCT6AP40227 531 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 PLCD1P51178 756 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 ST5P78524 1137 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 KIFC2Q96AC6 838 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 TJP1Q07157 1748 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 ALS2Q96Q42 1657 aa10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 OAS2P29728 719 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-215ENST00000512632 WTIPA6NIX2 430 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 TPM1P09493 284 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 CYP19A1P11511 503 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 HSPA2P54652 639 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 SMC1AQ14683 1233 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 GPR161Q8N6U8 529 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 BLZF1Q9H2G9 400 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 TNKSO95271 1327 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 CDC25AP30304 524 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 ZNF569Q5MCW4 686 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 NT5DC1Q5TFE4 455 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 SYMPKQ92797 1274 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 CEP131Q9UPN4 1083 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 MAPK8IP1Q9UQF2 711 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 CASP14P31944 242 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 CYP2C19P33261 490 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 HNRNPH2P55795 449 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 PPARAQ07869 468 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 KIF4BQ2VIQ3 1234 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 KANK3Q6NY19 840 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 STAG1Q8WVM7 1258 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 PAGE5Q96GU1 130 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 ADGRG1Q9Y653 693 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 A0A1B0GTH6 734 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 PLEKHA8P1O95397 391 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 ABL1P00519 1130 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 SPATA1Q5VX52 437 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 SUSD4Q5VX71 490 aa10.53□□□□□ -0.72
LIMCH1-215ENST00000512632 ERCC5P28715 1186 aaPredicted RBP10.52□□□□□ -0.72
LIMCH1-215ENST00000512632 TRIML1Q8N9V2 468 aa10.52□□□□□ -0.72
LIMCH1-215ENST00000512632 ZNF579Q8NAF0 562 aaKnown RBP10.52□□□□□ -0.72
LIMCH1-215ENST00000512632 RGS22Q8NE09 1264 aa10.52□□□□□ -0.72
LIMCH1-215ENST00000512632 GOLGA1Q92805 767 aa10.52□□□□□ -0.72
LIMCH1-215ENST00000512632 VPS16Q9H269 839 aa10.52□□□□□ -0.72
LIMCH1-215ENST00000512632 SPEF2Q9C093 1822 aa10.52□□□□□ -0.72
LIMCH1-215ENST00000512632 FXR1P51114 621 aaKnown RBP eCLIP10.52□□□□□ -0.73
LIMCH1-215ENST00000512632 MCM6Q14566 821 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms