RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 EZH2Q15910 746 aaKnown RBP13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 RASGRP2Q7LDG7 609 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 EHBP1Q8NDI1 1231 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 AIDAQ96BJ3 306 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 CYFIP2Q96F07 1278 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 CORO1CQ9ULV4 474 aaPredicted RBP13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 EMILIN1Q9Y6C2 1016 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 ZNF185O15231 689 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 ELF3P78545 371 aaPredicted RBP13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 AMPD2Q01433 879 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 DRP2Q13474 957 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 ZNF827Q17R98 1081 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 LRRC23Q53EV4 343 aaPredicted RBP13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 CCDC70Q6NSX1 233 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 SYNE3Q6ZMZ3 975 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 HDAC7Q8WUI4 952 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 ZNF570Q96NI8 536 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 TRIM4Q9C037 500 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 TFR2Q9UP52 801 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 PLCH2O75038 1416 aa13.5□□□□□ -0.25
LIMCH1-213ENST00000511496 FAM107AO95990 144 aa13.5□□□□□ -0.25
LIMCH1-213ENST00000511496 ATP1A1P05023 1023 aaKnown RBP13.5□□□□□ -0.25
LIMCH1-213ENST00000511496 CASP14P31944 242 aa13.5□□□□□ -0.25
LIMCH1-213ENST00000511496 ARHGAP22Q7Z5H3 698 aa13.5□□□□□ -0.25
LIMCH1-213ENST00000511496 NCAPG2Q86XI2 1143 aa13.5□□□□□ -0.25
LIMCH1-213ENST00000511496 MFN1Q8IWA4 741 aa13.5□□□□□ -0.25
LIMCH1-213ENST00000511496 ACSBG1Q96GR2 724 aa13.5□□□□□ -0.25
LIMCH1-213ENST00000511496 ANAPC4Q9UJX5 808 aa13.5□□□□□ -0.25
LIMCH1-213ENST00000511496 CTCFP49711 727 aaPredicted RBP13.5□□□□□ -0.25
LIMCH1-213ENST00000511496 RRP12Q5JTH9 1297 aaKnown RBP13.5□□□□□ -0.25
LIMCH1-213ENST00000511496 NSUN7Q8NE18 718 aaKnown RBP13.5□□□□□ -0.25
LIMCH1-213ENST00000511496 NEK1Q96PY6 1258 aa13.5□□□□□ -0.25
LIMCH1-213ENST00000511496 RMI1Q9H9A7 625 aa13.5□□□□□ -0.25
LIMCH1-213ENST00000511496 MGRN1O60291 552 aa13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 NR1D1P20393 614 aa13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 NBPF14Q5TI25 921 aa13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 C6orf89Q6UWU4 347 aa13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 C8orf76Q96K31 380 aa13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 ZIM3Q96PE6 472 aa13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 PANX2Q96RD6 677 aa13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 KIAA0825Q8IV33 1275 aa13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 FAM81AQ8TBF8 368 aa13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 KCNG4Q8TDN1 519 aa13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 ALS2CR12Q96Q35 445 aa13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 PCDHA5Q9Y5H7 936 aa13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 TARSL2A2RTX5 802 aaKnown RBP13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 ROR2Q01974 943 aaKnown RBP13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 TRIM68Q6AZZ1 485 aa13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 HVCN1Q96D96 273 aa13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 EBF2Q9HAK2 575 aa13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 PIDD1Q9HB75 910 aa13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 DMGDHQ9UI17 866 aaKnown RBP13.49□□□□□ -0.25
LIMCH1-213ENST00000511496 A0A0D9SFI3 127 aa13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 FERP16591 822 aa13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 ATP4AP20648 1035 aa13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 MDH1P40925 334 aaKnown RBP13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 MAGEA8P43361 318 aa13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 FMR1Q06787 632 aaKnown RBP eCLIP13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 ATL3Q6DD88 541 aa13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 TBC1D1Q86TI0 1168 aaPredicted RBP13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 AENQ8WTP8 325 aaKnown RBP13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 BLOC1S6Q9UL45 172 aa13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 PCDHGA4Q9Y5G9 962 aa13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 B4DLN1 442 aa13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 RNF8O76064 485 aa13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 TRAPPC11Q7Z392 1133 aa13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 JADE2Q9NQC1 790 aa13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 MXRA7P84157 204 aa13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 DBN1Q16643 649 aa13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 JAKMIP2Q96AA8 810 aa13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 GJB4Q9NTQ9 266 aa13.48□□□□□ -0.25
LIMCH1-213ENST00000511496 MAGI1Q96QZ7 1491 aaPredicted RBP13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 FOXN1O15353 648 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 OATP04181 439 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 QPCTQ16769 361 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 CFAP58Q5T655 872 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 STK11IPQ8N1F8 1099 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 CLASRPQ8N2M8 674 aaKnown RBP13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 PAGR1Q9BTK6 254 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 FSD1Q9BTV5 496 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 OSBPL1AQ9BXW6 950 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 NOP53Q9NZM5 478 aaKnown RBP13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 HECW2Q9P2P5 1572 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 CTDNEP1O95476 244 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 XRCC4Q13426 336 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 MFSD4BQ5TF39 518 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 KLHL10Q6JEL2 608 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 FOXP4Q8IVH2 680 aaPredicted RBP13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 AGAP11Q8TF27 550 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 PLEKHG4BQ96PX9 1271 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 LRRC1Q9BTT6 524 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 NAA15Q9BXJ9 866 aaKnown RBP13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 ZFATQ9P243 1243 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 TUBE1Q9UJT0 475 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 IQGAP3Q86VI3 1631 aa13.47□□□□□ -0.25
LIMCH1-213ENST00000511496 PDE2AO00408 941 aaPredicted RBP13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 FMNL1O95466 1100 aaPredicted RBP13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 POLE2P56282 527 aa13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 CCDC96Q2M329 555 aa13.46□□□□□ -0.25
LIMCH1-213ENST00000511496 PPP1R15BQ5SWA1 713 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms