RNA–Protein interactions for RNA: ENST00000508249.1

UBE2D3-223, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 604 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-223	ENST00000508249	ITPRIP	Q8IWB1	547 aa		11.35	□□□□□ -0.59
UBE2D3-223	ENST00000508249	PORCN	Q9H237	461 aa		11.35	□□□□□ -0.59
UBE2D3-223	ENST00000508249	FLRT1	Q9NZU1	646 aa		11.35	□□□□□ -0.59
UBE2D3-223	ENST00000508249	DDX19B	Q9UMR2	479 aa		11.35	□□□□□ -0.59
UBE2D3-223	ENST00000508249	MYO5A	Q9Y4I1	1855 aa	Known RBP	11.35	□□□□□ -0.59
UBE2D3-223	ENST00000508249	TBC1D12	O60347	775 aa		11.34	□□□□□ -0.59
UBE2D3-223	ENST00000508249	LDHB	P07195	334 aa	Known RBP	11.34	□□□□□ -0.59
UBE2D3-223	ENST00000508249	IFIT1	P09914	478 aa	Known RBP	11.34	□□□□□ -0.59
UBE2D3-223	ENST00000508249	PLA2G5	P39877	138 aa		11.34	□□□□□ -0.59
UBE2D3-223	ENST00000508249	PHKA1	P46020	1223 aa		11.34	□□□□□ -0.59
UBE2D3-223	ENST00000508249	SHROOM1	Q2M3G4	852 aa	Predicted RBP	11.34	□□□□□ -0.59
UBE2D3-223	ENST00000508249	ZNF280C	Q8ND82	737 aa		11.34	□□□□□ -0.59
UBE2D3-223	ENST00000508249	SOCS4	Q8WXH5	440 aa		11.34	□□□□□ -0.59
UBE2D3-223	ENST00000508249	LPIN2	Q92539	896 aa		11.34	□□□□□ -0.59
UBE2D3-223	ENST00000508249	GBF1	Q92538	1859 aa		11.34	□□□□□ -0.59
UBE2D3-223	ENST00000508249	SRGAP3	O43295	1099 aa		11.33	□□□□□ -0.6
UBE2D3-223	ENST00000508249	ZKSCAN1	P17029	563 aa	Predicted RBP	11.33	□□□□□ -0.6
UBE2D3-223	ENST00000508249		Q3C1V9	767 aa		11.33	□□□□□ -0.6
UBE2D3-223	ENST00000508249	NUDT12	Q9BQG2	462 aa		11.33	□□□□□ -0.6
UBE2D3-223	ENST00000508249	CEP126	Q9P2H0	1117 aa		11.33	□□□□□ -0.6
UBE2D3-223	ENST00000508249	RBPJL	Q9UBG7	517 aa		11.33	□□□□□ -0.6
UBE2D3-223	ENST00000508249	PARP14	Q460N5	1801 aa		11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	TNFRSF10A	O00220	468 aa		11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	SLC5A1	P13866	664 aa		11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	HOXA7	P31268	230 aa	Predicted RBP	11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	RTP1	P59025	263 aa		11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	HERVK_113	P62684	666 aa		11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	SMAD3	P84022	425 aa	Known RBP	11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	PICALM	Q13492	652 aa		11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	MVP	Q14764	893 aa	Known RBP	11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	TRPV1	Q8NER1	839 aa		11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	FAM163A	Q96GL9	167 aa	Predicted RBP	11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	P2RX7	Q99572	595 aa	Known RBP	11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	APBA2	Q99767	749 aa		11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	SENP6	Q9GZR1	1112 aa	Predicted RBP	11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	OSBPL5	Q9H0X9	879 aa	Predicted RBP	11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	DNAJC18	Q9H819	358 aa		11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	MROH7-TTC4	A0A0A0MT08	1334 aa		11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	PLXNA1	Q9UIW2	1896 aa		11.32	□□□□□ -0.6
UBE2D3-223	ENST00000508249	NPM3	O75607	178 aa	Known RBP	11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	CNMD	O75829	334 aa		11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	RLBP1	P12271	317 aa		11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	FOSL2	P15408	326 aa		11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	ITGB8	P26012	769 aa		11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	ADORA1	P30542	326 aa		11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	CAP2	P40123	477 aa		11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	BTD	P43251	543 aa		11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	ATN1	P54259	1190 aa	Predicted RBP	11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	MTMR2	Q13614	643 aa		11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	RASGRF1	Q13972	1273 aa		11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	SNX17	Q15036	470 aa		11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	TJAP1	Q5JTD0	557 aa		11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	GPR142	Q7Z601	462 aa		11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	PDLIM7	Q9NR12	457 aa		11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	TNN	Q9UQP3	1299 aa		11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	AKAP2	Q9Y2D5	859 aa		11.31	□□□□□ -0.6
UBE2D3-223	ENST00000508249	DNM1L	O00429	736 aa		11.3	□□□□□ -0.6
UBE2D3-223	ENST00000508249	HOXD11	P31277	338 aa	Predicted RBP	11.3	□□□□□ -0.6
UBE2D3-223	ENST00000508249	EPHB4	P54760	987 aa		11.3	□□□□□ -0.6
UBE2D3-223	ENST00000508249	ERVK-9	P63128	1117 aa		11.3	□□□□□ -0.6
UBE2D3-223	ENST00000508249	ERVK-24	P63145	666 aa		11.3	□□□□□ -0.6
UBE2D3-223	ENST00000508249	ATP8B2	P98198	1209 aa		11.3	□□□□□ -0.6
UBE2D3-223	ENST00000508249	G3BP1	Q13283	466 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
UBE2D3-223	ENST00000508249	POLA2	Q14181	598 aa		11.3	□□□□□ -0.6
UBE2D3-223	ENST00000508249	SH3RF1	Q7Z6J0	888 aa		11.3	□□□□□ -0.6
UBE2D3-223	ENST00000508249	SSH3	Q8TE77	659 aa		11.3	□□□□□ -0.6
UBE2D3-223	ENST00000508249	SYMPK	Q92797	1274 aa	Known RBP	11.3	□□□□□ -0.6
UBE2D3-223	ENST00000508249	LBHD1	Q9BQE6	289 aa	Predicted RBP	11.3	□□□□□ -0.6
UBE2D3-223	ENST00000508249	WDR18	Q9BV38	432 aa		11.3	□□□□□ -0.6
UBE2D3-223	ENST00000508249	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
UBE2D3-223	ENST00000508249	GNL3L	Q9NVN8	582 aa	Known RBP	11.3	□□□□□ -0.6
UBE2D3-223	ENST00000508249	PDS5A	Q29RF7	1337 aa	Known RBP	11.3	□□□□□ -0.6
UBE2D3-223	ENST00000508249	TMEM265	A0A087WTH1	108 aa		11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	GPR75-ASB3	A0A0A6YYF3	556 aa		11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	TRIM43B	A6NCK2	446 aa		11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	SEMA3E	O15041	775 aa		11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	HMMR	O75330	724 aa		11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	MAPK4	P31152	587 aa		11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	RGS2	P41220	211 aa		11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	BACE1	P56817	501 aa		11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	PABPC4	Q13310	644 aa	Known RBP eCLIP	11.29	□□□□□ -0.6	4e-7	■■■■□ 24.1
UBE2D3-223	ENST00000508249	GRIN2C	Q14957	1233 aa		11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	ATP2B3	Q16720	1220 aa		11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	HSP90AB4P	Q58FF6	505 aa		11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	RPAP2	Q8IXW5	612 aa	Predicted RBP	11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	TRMT44	Q8IYL2	757 aa	Known RBP	11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	GPRC5A	Q8NFJ5	357 aa		11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	PANK1	Q8TE04	598 aa		11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	LPAR1	Q92633	364 aa		11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	BAD	Q92934	168 aa		11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	TRIM43	Q96BQ3	446 aa	Predicted RBP	11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	TBC1D2	Q9BYX2	928 aa		11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	DDX20	Q9UHI6	824 aa	Known RBP	11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	DENND2A	Q9ULE3	1009 aa		11.29	□□□□□ -0.6
UBE2D3-223	ENST00000508249	USP17L5	A8MUK1	530 aa		11.28	□□□□□ -0.6
UBE2D3-223	ENST00000508249	CYBA	P13498	195 aa		11.28	□□□□□ -0.6
UBE2D3-223	ENST00000508249	IRX3	P78415	501 aa	Predicted RBP	11.28	□□□□□ -0.6
UBE2D3-223	ENST00000508249	MECOM	Q03112	1051 aa		11.28	□□□□□ -0.6
UBE2D3-223	ENST00000508249	MAP2K5	Q13163	448 aa		11.28	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms