RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 MMS22LQ6ZRQ5 1243 aa19.4■□□□□ 0.7
SQSTM1-211ENST00000506690 MYCBPQ99417 103 aaPredicted RBP19.4■□□□□ 0.7
SQSTM1-211ENST00000506690 NBPF3Q9H094 633 aa19.4■□□□□ 0.7
SQSTM1-211ENST00000506690 ITIH6Q6UXX5 1313 aa19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 SH2B2O14492 632 aaPredicted RBP19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 RXRAP19793 462 aa19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 FXR1P51114 621 aaKnown RBP eCLIP19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 EIF5P55010 431 aaKnown RBP19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 FKBP4Q02790 459 aaKnown RBP eCLIP19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 SWT1Q5T5J6 900 aaKnown RBP19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 TMTC1Q8IUR5 882 aa19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 NOSTRINQ8IVI9 506 aa19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 ZNF579Q8NAF0 562 aaKnown RBP19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 CTAGE1Q96RT6 745 aa19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 HPCAL4Q9UM19 191 aa19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 UBN2Q6ZU65 1347 aa19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 WDR17Q8IZU2 1322 aa19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 H7C1W4 665 aa19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 RANBP6O60518 1105 aaKnown RBP19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 SHOX2O60902 331 aaPredicted RBP19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 NCAPH2Q6IBW4 605 aa19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 CCDC148Q8NFR7 591 aa19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 APPBP2Q92624 585 aa19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 PUS7LQ9H0K6 701 aaKnown RBP19.39■□□□□ 0.69
SQSTM1-211ENST00000506690 EYA2O00167 538 aa19.38■□□□□ 0.69
SQSTM1-211ENST00000506690 IARSP41252 1262 aaKnown RBP19.38■□□□□ 0.69
SQSTM1-211ENST00000506690 USP14P54578 494 aa19.38■□□□□ 0.69
SQSTM1-211ENST00000506690 ERVK-24P63145 666 aa19.38■□□□□ 0.69
SQSTM1-211ENST00000506690 LRRC24Q50LG9 513 aa19.38■□□□□ 0.69
SQSTM1-211ENST00000506690 CYB5R4Q7L1T6 521 aa19.38■□□□□ 0.69
SQSTM1-211ENST00000506690 KRT28Q7Z3Y7 464 aa19.38■□□□□ 0.69
SQSTM1-211ENST00000506690 NKX2-3Q8TAU0 364 aa19.38■□□□□ 0.69
SQSTM1-211ENST00000506690 ZNF496Q96IT1 587 aaPredicted RBP19.38■□□□□ 0.69
SQSTM1-211ENST00000506690 FAM107BQ9H098 131 aa19.38■□□□□ 0.69
SQSTM1-211ENST00000506690 SLC52A2Q9HAB3 445 aa19.38■□□□□ 0.69
SQSTM1-211ENST00000506690 DENND2AQ9ULE3 1009 aa19.38■□□□□ 0.69
SQSTM1-211ENST00000506690 SCN11AQ9UI33 1791 aa19.38■□□□□ 0.69
SQSTM1-211ENST00000506690 CDHR2Q9BYE9 1310 aa19.38■□□□□ 0.69
SQSTM1-211ENST00000506690 KDM6AO15550 1401 aaPredicted RBP19.38■□□□□ 0.69
SQSTM1-211ENST00000506690 SEMA3EO15041 775 aa19.37■□□□□ 0.69
SQSTM1-211ENST00000506690 GCP02774 474 aa19.37■□□□□ 0.69
SQSTM1-211ENST00000506690 PIP4K2AP48426 406 aaPredicted RBP19.37■□□□□ 0.69
SQSTM1-211ENST00000506690 CUL4BQ13620 913 aa19.37■□□□□ 0.69
SQSTM1-211ENST00000506690 TOMM22Q9NS69 142 aa19.37■□□□□ 0.69
SQSTM1-211ENST00000506690 MYO5AQ9Y4I1 1855 aaKnown RBP19.37■□□□□ 0.69
SQSTM1-211ENST00000506690 FAM217BQ9NTX9 383 aaPredicted RBP19.37■□□□□ 0.69
SQSTM1-211ENST00000506690 MCM3P25205 808 aa19.36■□□□□ 0.69
SQSTM1-211ENST00000506690 MAP9Q49MG5 647 aa19.36■□□□□ 0.69
SQSTM1-211ENST00000506690 TAOK2Q9UL54 1235 aa19.36■□□□□ 0.69
SQSTM1-211ENST00000506690 STK36Q9NRP7 1315 aa19.36■□□□□ 0.69
SQSTM1-211ENST00000506690 SYNRGQ9UMZ2 1314 aa19.36■□□□□ 0.69
SQSTM1-211ENST00000506690 LOC102724159A0A0B4J2E5 919 aa19.36■□□□□ 0.69
SQSTM1-211ENST00000506690 CD44P16070 742 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-211ENST00000506690 ATF3P18847 181 aa19.36■□□□□ 0.69
SQSTM1-211ENST00000506690 PWP2Q15269 919 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-211ENST00000506690 FILIP1LQ4L180 1135 aa19.36■□□□□ 0.69
SQSTM1-211ENST00000506690 MCTP2Q6DN12 878 aa19.36■□□□□ 0.69
SQSTM1-211ENST00000506690 TRAPPC11Q7Z392 1133 aa19.36■□□□□ 0.69
SQSTM1-211ENST00000506690 MICU3Q86XE3 530 aa19.36■□□□□ 0.69
SQSTM1-211ENST00000506690 COG1Q8WTW3 980 aa19.36■□□□□ 0.69
SQSTM1-211ENST00000506690 SENP2Q9HC62 589 aa19.36■□□□□ 0.69
SQSTM1-211ENST00000506690 UBE2Q2LH0YL09 131 aa19.35■□□□□ 0.69
SQSTM1-211ENST00000506690 GPAA1O43292 621 aa19.35■□□□□ 0.69
SQSTM1-211ENST00000506690 CIAO1O76071 339 aa19.35■□□□□ 0.69
SQSTM1-211ENST00000506690 PLBD2Q8NHP8 589 aa19.35■□□□□ 0.69
SQSTM1-211ENST00000506690 CEP89Q96ST8 783 aa19.35■□□□□ 0.69
SQSTM1-211ENST00000506690 ABHD10Q9NUJ1 306 aa19.35■□□□□ 0.69
SQSTM1-211ENST00000506690 MST1RQ04912 1400 aa19.35■□□□□ 0.69
SQSTM1-211ENST00000506690 MYH7P12883 1935 aa19.35■□□□□ 0.69
SQSTM1-211ENST00000506690 BTBD18B2RXH4 712 aa19.35■□□□□ 0.69
SQSTM1-211ENST00000506690 EXOC5O00471 708 aa19.35■□□□□ 0.69
SQSTM1-211ENST00000506690 ZBTB43O43298 467 aa19.35■□□□□ 0.69
SQSTM1-211ENST00000506690 SNRPA1P09661 255 aaKnown RBP19.35■□□□□ 0.69
SQSTM1-211ENST00000506690 TBC1D10CQ8IV04 446 aa19.35■□□□□ 0.69
SQSTM1-211ENST00000506690 SRPRBQ9Y5M8 271 aaKnown RBP19.35■□□□□ 0.69
SQSTM1-211ENST00000506690 C1orf167Q5SNV9 1468 aa19.35■□□□□ 0.69
SQSTM1-211ENST00000506690 LAMB4A4D0S4 1761 aa19.34■□□□□ 0.69
SQSTM1-211ENST00000506690 TARSL2A2RTX5 802 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-211ENST00000506690 AKAP17AQ02040 695 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-211ENST00000506690 HSP90AB3PQ58FF7 597 aa19.34■□□□□ 0.69
SQSTM1-211ENST00000506690 RILPL1Q5EBL4 403 aa19.34■□□□□ 0.69
SQSTM1-211ENST00000506690 CYP26C1Q6V0L0 522 aa19.34■□□□□ 0.69
SQSTM1-211ENST00000506690 MICALL1Q8N3F8 863 aa19.34■□□□□ 0.69
SQSTM1-211ENST00000506690 SMARCC1Q92922 1105 aaPredicted RBP19.34■□□□□ 0.69
SQSTM1-211ENST00000506690 STRCP1A6NGW2 1772 aa19.34■□□□□ 0.69
SQSTM1-211ENST00000506690 MMP1P03956 469 aa19.34■□□□□ 0.69
SQSTM1-211ENST00000506690 CHRM1P11229 460 aaPredicted RBP19.34■□□□□ 0.69
SQSTM1-211ENST00000506690 SART3Q15020 963 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-211ENST00000506690 TEX2Q8IWB9 1127 aa19.34■□□□□ 0.69
SQSTM1-211ENST00000506690 ZNF594Q96JF6 807 aaPredicted RBP19.34■□□□□ 0.69
SQSTM1-211ENST00000506690 PARP4Q9UKK3 1724 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-211ENST00000506690 STX17P56962 302 aa19.33■□□□□ 0.69
SQSTM1-211ENST00000506690 STIM1Q13586 685 aa19.33■□□□□ 0.69
SQSTM1-211ENST00000506690 USP49Q70CQ1 688 aa19.33■□□□□ 0.69
SQSTM1-211ENST00000506690 SGMS1Q86VZ5 419 aa19.33■□□□□ 0.69
SQSTM1-211ENST00000506690 IGDCC4Q8TDY8 1250 aa19.33■□□□□ 0.69
SQSTM1-211ENST00000506690 TMEM87BQ96K49 555 aa19.33■□□□□ 0.69
SQSTM1-211ENST00000506690 PSMD14O00487 310 aa19.33■□□□□ 0.68
SQSTM1-211ENST00000506690 KLHL10Q6JEL2 608 aa19.33■□□□□ 0.68
SQSTM1-211ENST00000506690 RIN2Q8WYP3 895 aaPredicted RBP19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms