RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 POLA2Q14181 598 aa25.66■■□□□ 1.7
SQSTM1-210ENST00000506042 ERC1Q8IUD2 1116 aa25.66■■□□□ 1.7
SQSTM1-210ENST00000506042 TMEM57Q8N5G2 664 aa25.66■■□□□ 1.7
SQSTM1-210ENST00000506042 SSH3Q8TE77 659 aa25.66■■□□□ 1.7
SQSTM1-210ENST00000506042 NBPF3Q9H094 633 aa25.66■■□□□ 1.7
SQSTM1-210ENST00000506042 BRCA2P51587 3418 aa25.65■■□□□ 1.7
SQSTM1-210ENST00000506042 CCNA1P78396 465 aa25.65■■□□□ 1.7
SQSTM1-210ENST00000506042 PAWRQ96IZ0 340 aaKnown RBP25.65■■□□□ 1.7
SQSTM1-210ENST00000506042 FEZ1Q99689 392 aa25.65■■□□□ 1.7
SQSTM1-210ENST00000506042 DBNDD2Q9BQY9 259 aa25.65■■□□□ 1.7
SQSTM1-210ENST00000506042 IDH1O75874 414 aaKnown RBP25.64■■□□□ 1.7
SQSTM1-210ENST00000506042 SLURP2P0DP57 97 aa25.64■■□□□ 1.7
SQSTM1-210ENST00000506042 XRCC5P13010 732 aaKnown RBP25.64■■□□□ 1.7
SQSTM1-210ENST00000506042 USP14P54578 494 aa25.64■■□□□ 1.7
SQSTM1-210ENST00000506042 HERVK_113P62684 666 aa25.64■■□□□ 1.7
SQSTM1-210ENST00000506042 MAP3K12Q12852 859 aa25.64■■□□□ 1.7
SQSTM1-210ENST00000506042 USP17L2Q6R6M4 530 aa25.64■■□□□ 1.7
SQSTM1-210ENST00000506042 TTC6Q86TZ1 520 aa25.64■■□□□ 1.7
SQSTM1-210ENST00000506042 ITPRIPQ8IWB1 547 aa25.64■■□□□ 1.7
SQSTM1-210ENST00000506042 ZBTB21Q9ULJ3 1066 aa25.64■■□□□ 1.7
SQSTM1-210ENST00000506042 FOCADQ5VW36 1801 aa25.63■■□□□ 1.69
SQSTM1-210ENST00000506042 CYP2E1P05181 493 aaPredicted RBP25.63■■□□□ 1.69
SQSTM1-210ENST00000506042 CYP7A1P22680 504 aa25.63■■□□□ 1.69
SQSTM1-210ENST00000506042 HSP90AB4PQ58FF6 505 aa25.63■■□□□ 1.69
SQSTM1-210ENST00000506042 METTL16Q86W50 562 aaKnown RBP25.63■■□□□ 1.69
SQSTM1-210ENST00000506042 CABP5Q9NP86 173 aa25.63■■□□□ 1.69
SQSTM1-210ENST00000506042 PALD1Q9ULE6 856 aa25.63■■□□□ 1.69
SQSTM1-210ENST00000506042 ZKSCAN1P17029 563 aaPredicted RBP25.62■■□□□ 1.69
SQSTM1-210ENST00000506042 RGS2P41220 211 aa25.62■■□□□ 1.69
SQSTM1-210ENST00000506042 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.62■■□□□ 1.69
SQSTM1-210ENST00000506042 ZAP70P43403 619 aa25.61■■□□□ 1.69
SQSTM1-210ENST00000506042 NOP58Q9Y2X3 529 aaKnown RBP25.61■■□□□ 1.69
SQSTM1-210ENST00000506042 GDF11O95390 407 aa25.6■■□□□ 1.69
SQSTM1-210ENST00000506042 MS4A1P11836 297 aa25.6■■□□□ 1.69
SQSTM1-210ENST00000506042 CYP2B6P20813 491 aa25.6■■□□□ 1.69
SQSTM1-210ENST00000506042 TTF1Q15361 905 aaPredicted RBP25.6■■□□□ 1.69
SQSTM1-210ENST00000506042 C11orf49Q9H6J7 331 aa25.6■■□□□ 1.69
SQSTM1-210ENST00000506042 SAP30BPQ9UHR5 308 aaKnown RBP25.6■■□□□ 1.69
SQSTM1-210ENST00000506042 SERPINB13Q9UIV8 391 aa25.6■■□□□ 1.69
SQSTM1-210ENST00000506042 GJD2Q9UKL4 321 aa25.6■■□□□ 1.69
SQSTM1-210ENST00000506042 ERVK-9P63128 1117 aa25.59■■□□□ 1.69
SQSTM1-210ENST00000506042 ERVK-24P63145 666 aa25.59■■□□□ 1.69
SQSTM1-210ENST00000506042 P2RX7Q99572 595 aaKnown RBP25.59■■□□□ 1.69
SQSTM1-210ENST00000506042 EHD4Q9H223 541 aa25.59■■□□□ 1.69
SQSTM1-210ENST00000506042 IVNS1ABPQ9Y6Y0 642 aa25.59■■□□□ 1.69
SQSTM1-210ENST00000506042 CEP290O15078 2479 aa25.58■■□□□ 1.69
SQSTM1-210ENST00000506042 PAGR1Q9BTK6 254 aa25.58■■□□□ 1.69
SQSTM1-210ENST00000506042 CDK5RAP2Q96SN8 1893 aa25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 USP17L15C9J2P7 530 aa25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 USP17L13C9JLJ4 530 aa25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 USP17L11C9JVI0 530 aa25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 USP17L18D6R9N7 530 aa25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 USP17L22D6RA61 530 aa25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 USP17L17D6RBQ6 530 aa25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 USP17L19D6RCP7 530 aa25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 USP17L20D6RJB6 530 aa25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 PRKAR2AP13861 404 aaKnown RBP25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 USP17L24Q0WX57 530 aa25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 PLEKHH3Q7Z736 793 aa25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 C7orf61Q8IZ16 206 aa25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 APBA2Q99767 749 aa25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 DBNLQ9UJU6 430 aaKnown RBP25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 RABGAP1Q9Y3P9 1069 aa25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 DOCK3Q8IZD9 2030 aa25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 MYH1P12882 1939 aa25.57■■□□□ 1.68
SQSTM1-210ENST00000506042 GH2P01242 217 aa25.56■■□□□ 1.68
SQSTM1-210ENST00000506042 RRP1BQ14684 758 aaKnown RBP25.56■■□□□ 1.68
SQSTM1-210ENST00000506042 MAGEB6Q8N7X4 407 aa25.56■■□□□ 1.68
SQSTM1-210ENST00000506042 OGDHLQ9ULD0 1010 aa25.56■■□□□ 1.68
SQSTM1-210ENST00000506042 RAB3GAP1Q15042 981 aa25.55■■□□□ 1.68
SQSTM1-210ENST00000506042 CERKLQ49MI3 558 aaPredicted RBP25.55■■□□□ 1.68
SQSTM1-210ENST00000506042 MFSD14CQ5VZR4 134 aa25.55■■□□□ 1.68
SQSTM1-210ENST00000506042 TRIB2Q92519 343 aa25.55■■□□□ 1.68
SQSTM1-210ENST00000506042 C12orf42Q96LP6 360 aa25.55■■□□□ 1.68
SQSTM1-210ENST00000506042 CCDC8Q9H0W5 538 aaPredicted RBP25.55■■□□□ 1.68
SQSTM1-210ENST00000506042 PRO3102Q9H379 93 aa25.55■■□□□ 1.68
SQSTM1-210ENST00000506042 PIH1D3Q9NQM4 214 aaKnown RBP25.55■■□□□ 1.68
SQSTM1-210ENST00000506042 TNNQ9UQP3 1299 aa25.55■■□□□ 1.68
SQSTM1-210ENST00000506042 SIPA1L1O43166 1804 aa25.55■■□□□ 1.68
SQSTM1-210ENST00000506042 BMP8BP34820 402 aa25.54■■□□□ 1.68
SQSTM1-210ENST00000506042 HNRNPUQ00839 825 aaKnown RBP eCLIP25.54■■□□□ 1.68
SQSTM1-210ENST00000506042 ABCB5Q2M3G0 1257 aa25.54■■□□□ 1.68
SQSTM1-210ENST00000506042 WDR78Q5VTH9 848 aa25.54■■□□□ 1.68
SQSTM1-210ENST00000506042 GPR142Q7Z601 462 aa25.54■■□□□ 1.68
SQSTM1-210ENST00000506042 ADGRA1Q86SQ6 560 aa25.54■■□□□ 1.68
SQSTM1-210ENST00000506042 MIGA1Q8NAN2 632 aa25.54■■□□□ 1.68
SQSTM1-210ENST00000506042 CHMP4BQ9H444 224 aaKnown RBP25.54■■□□□ 1.68
SQSTM1-210ENST00000506042 DNAJC18Q9H819 358 aa25.54■■□□□ 1.68
SQSTM1-210ENST00000506042 TRIOBPQ9H2D6 2365 aa25.54■■□□□ 1.68
SQSTM1-210ENST00000506042 MSCO60682 206 aa25.53■■□□□ 1.68
SQSTM1-210ENST00000506042 POLR3DP05423 398 aaPredicted RBP25.53■■□□□ 1.68
SQSTM1-210ENST00000506042 MAP3K21Q5TCX8 1036 aa25.53■■□□□ 1.68
SQSTM1-210ENST00000506042 TATDN1Q6P1N9 297 aa25.53■■□□□ 1.68
SQSTM1-210ENST00000506042 AACSQ86V21 672 aa25.53■■□□□ 1.68
SQSTM1-210ENST00000506042 CRNKL1Q9BZJ0 848 aaKnown RBP25.53■■□□□ 1.68
SQSTM1-210ENST00000506042 KIAA1683Q9H0B3 1180 aa25.53■■□□□ 1.68
SQSTM1-210ENST00000506042 C1orf115Q9H7X2 142 aa25.53■■□□□ 1.68
SQSTM1-210ENST00000506042 STAP2Q9UGK3 403 aa25.53■■□□□ 1.68
SQSTM1-210ENST00000506042 HMMRO75330 724 aa25.52■■□□□ 1.68
SQSTM1-210ENST00000506042 DYNLL1P63167 89 aaKnown RBP25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms