RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ZFPM1Q8IX07 1006 aa12□□□□□ -0.49
NUP54-203ENST00000504173 FAM122AQ96E09 287 aa12□□□□□ -0.49
NUP54-203ENST00000504173 DDRGK1Q96HY6 314 aa12□□□□□ -0.49
NUP54-203ENST00000504173 TMEM39BQ9GZU3 492 aa12□□□□□ -0.49
NUP54-203ENST00000504173 OSBPL5Q9H0X9 879 aaPredicted RBP12□□□□□ -0.49
NUP54-203ENST00000504173 CCDC171Q6TFL3 1326 aa12□□□□□ -0.49
NUP54-203ENST00000504173 RAD50Q92878 1312 aa12□□□□□ -0.49
NUP54-203ENST00000504173 APPP05067 770 aa11.99□□□□□ -0.49
NUP54-203ENST00000504173 GJA8P48165 433 aa11.99□□□□□ -0.49
NUP54-203ENST00000504173 GDF15Q99988 308 aa11.99□□□□□ -0.49
NUP54-203ENST00000504173 DCP1AQ9NPI6 582 aaPredicted RBP11.99□□□□□ -0.49
NUP54-203ENST00000504173 ATP8A2Q9NTI2 1148 aa11.99□□□□□ -0.49
NUP54-203ENST00000504173 SAP30BPQ9UHR5 308 aaKnown RBP11.99□□□□□ -0.49
NUP54-203ENST00000504173 RPTORQ8N122 1335 aa11.99□□□□□ -0.49
NUP54-203ENST00000504173 RPAP1Q9BWH6 1393 aaPredicted RBP11.99□□□□□ -0.49
NUP54-203ENST00000504173 FOCADQ5VW36 1801 aa11.99□□□□□ -0.49
NUP54-203ENST00000504173 NAV1Q8NEY1 1877 aa11.99□□□□□ -0.49
NUP54-203ENST00000504173 COL2A1P02458 1487 aaPredicted RBP11.98□□□□□ -0.49
NUP54-203ENST00000504173 TESPA1A2RU30 521 aaPredicted RBP11.98□□□□□ -0.49
NUP54-203ENST00000504173 UNCXA6NJT0 531 aa11.98□□□□□ -0.49
NUP54-203ENST00000504173 PATL2C9JE40 543 aaKnown RBP11.98□□□□□ -0.49
NUP54-203ENST00000504173 MYCP01106 439 aaPredicted RBP11.98□□□□□ -0.49
NUP54-203ENST00000504173 MAP3K11Q16584 847 aa11.98□□□□□ -0.49
NUP54-203ENST00000504173 CDAN1Q8IWY9 1227 aa11.98□□□□□ -0.49
NUP54-203ENST00000504173 AMOTL1Q8IY63 956 aa11.98□□□□□ -0.49
NUP54-203ENST00000504173 SH3TC2Q8TF17 1288 aa11.98□□□□□ -0.49
NUP54-203ENST00000504173 WNK4Q96J92 1243 aa11.98□□□□□ -0.49
NUP54-203ENST00000504173 TEPSINQ96N21 525 aa11.98□□□□□ -0.49
NUP54-203ENST00000504173 NACAP1Q9BZK3 213 aa11.98□□□□□ -0.49
NUP54-203ENST00000504173 MCM9Q9NXL9 1143 aa11.98□□□□□ -0.49
NUP54-203ENST00000504173 SSC5DA1L4H1 1573 aa11.97□□□□□ -0.49
NUP54-203ENST00000504173 ATRNL1Q5VV63 1379 aa11.97□□□□□ -0.49
NUP54-203ENST00000504173 DDTLA6NHG4 134 aaPredicted RBP11.97□□□□□ -0.49
NUP54-203ENST00000504173 GSG1L2A8MUP6 293 aa11.97□□□□□ -0.49
NUP54-203ENST00000504173 SGSM2O43147 1006 aa11.97□□□□□ -0.49
NUP54-203ENST00000504173 POLR3DP05423 398 aaPredicted RBP11.97□□□□□ -0.49
NUP54-203ENST00000504173 HLA-DOAP06340 250 aa11.97□□□□□ -0.49
NUP54-203ENST00000504173 TDO2P48775 406 aa11.97□□□□□ -0.49
NUP54-203ENST00000504173 SUPT20HL1Q3ZLR7 823 aa11.97□□□□□ -0.49
NUP54-203ENST00000504173 NBPF12Q5TAG4 269 aaPredicted RBP11.97□□□□□ -0.49
NUP54-203ENST00000504173 VPS53Q5VIR6 699 aa11.97□□□□□ -0.49
NUP54-203ENST00000504173 GIMAP6Q6P9H5 292 aa11.97□□□□□ -0.49
NUP54-203ENST00000504173 SH3BP5LQ7L8J4 393 aa11.97□□□□□ -0.49
NUP54-203ENST00000504173 HOOK2Q96ED9 719 aa11.97□□□□□ -0.49
NUP54-203ENST00000504173 SLC10A4Q96EP9 437 aa11.97□□□□□ -0.49
NUP54-203ENST00000504173 ESYT1Q9BSJ8 1104 aa11.97□□□□□ -0.49
NUP54-203ENST00000504173 IL25Q9H293 177 aa11.97□□□□□ -0.49
NUP54-203ENST00000504173 DHX36Q9H2U1 1008 aaKnown RBP11.97□□□□□ -0.49
NUP54-203ENST00000504173 PALD1Q9ULE6 856 aa11.97□□□□□ -0.49
NUP54-203ENST00000504173 MYH1P12882 1939 aa11.97□□□□□ -0.49
NUP54-203ENST00000504173 EYSQ5T1H1 3165 aa11.96□□□□□ -0.49
NUP54-203ENST00000504173 PRUNE2Q8WUY3 3088 aa11.96□□□□□ -0.49
NUP54-203ENST00000504173 EVI5O60447 810 aa11.96□□□□□ -0.49
NUP54-203ENST00000504173 GNRH1P01148 92 aa11.96□□□□□ -0.49
NUP54-203ENST00000504173 GJB1P08034 283 aa11.96□□□□□ -0.49
NUP54-203ENST00000504173 HSPD1P10809 573 aaKnown RBP11.96□□□□□ -0.49
NUP54-203ENST00000504173 PRMT2P55345 433 aa11.96□□□□□ -0.49
NUP54-203ENST00000504173 KIAA1211Q6ZU35 1233 aa11.96□□□□□ -0.49
NUP54-203ENST00000504173 TTC6Q86TZ1 520 aa11.96□□□□□ -0.49
NUP54-203ENST00000504173 IFNL3Q8IZI9 196 aa11.96□□□□□ -0.49
NUP54-203ENST00000504173 SYMPKQ92797 1274 aaKnown RBP11.96□□□□□ -0.49
NUP54-203ENST00000504173 NAPBQ9H115 298 aa11.96□□□□□ -0.49
NUP54-203ENST00000504173 EPB41L4AQ9HCS5 686 aaPredicted RBP11.96□□□□□ -0.49
NUP54-203ENST00000504173 PI4KBQ9UBF8 816 aa11.96□□□□□ -0.49
NUP54-203ENST00000504173 ARPP21Q9UBL0 812 aaPredicted RBP11.96□□□□□ -0.49
NUP54-203ENST00000504173 RAPGEFL1Q9UHV5 662 aa11.96□□□□□ -0.49
NUP54-203ENST00000504173 DDX60LQ5H9U9 1706 aaKnown RBP11.96□□□□□ -0.49
NUP54-203ENST00000504173 BAZ2AQ9UIF9 1905 aaKnown RBP11.96□□□□□ -0.5
NUP54-203ENST00000504173 USP17L12C9JPN9 530 aa11.95□□□□□ -0.5
NUP54-203ENST00000504173 USP17L21D6R901 530 aa11.95□□□□□ -0.5
NUP54-203ENST00000504173 FOXP2O15409 715 aa11.95□□□□□ -0.5
NUP54-203ENST00000504173 PPP1R12BO60237 982 aaPredicted RBP11.95□□□□□ -0.5
NUP54-203ENST00000504173 PRKG1Q13976 671 aa11.95□□□□□ -0.5
NUP54-203ENST00000504173 MTFR1Q15390 333 aa11.95□□□□□ -0.5
NUP54-203ENST00000504173 DCAF15Q66K64 600 aa11.95□□□□□ -0.5
NUP54-203ENST00000504173 FAM109BQ6ICB4 259 aaPredicted RBP11.95□□□□□ -0.5
NUP54-203ENST00000504173 MIGA2Q7L4E1 593 aa11.95□□□□□ -0.5
NUP54-203ENST00000504173 CRACR2BQ8N4Y2 399 aaPredicted RBP11.95□□□□□ -0.5
NUP54-203ENST00000504173 GUCD1Q96NT3 240 aa11.95□□□□□ -0.5
NUP54-203ENST00000504173 PTPN18Q99952 460 aa11.95□□□□□ -0.5
NUP54-203ENST00000504173 DSCC1Q9BVC3 393 aa11.95□□□□□ -0.5
NUP54-203ENST00000504173 TRIM34Q9BYJ4 488 aa11.95□□□□□ -0.5
NUP54-203ENST00000504173 PIEZO1Q92508 2521 aa11.95□□□□□ -0.5
NUP54-203ENST00000504173 CYP2D7A0A087X1C5 515 aa11.94□□□□□ -0.5
NUP54-203ENST00000504173 MINDY4BA8MYZ0 360 aa11.94□□□□□ -0.5
NUP54-203ENST00000504173 FARP2O94887 1054 aaPredicted RBP11.94□□□□□ -0.5
NUP54-203ENST00000504173 CYP2D6P10635 497 aa11.94□□□□□ -0.5
NUP54-203ENST00000504173 CAPN2P17655 700 aa11.94□□□□□ -0.5
NUP54-203ENST00000504173 PLCD1P51178 756 aa11.94□□□□□ -0.5
NUP54-203ENST00000504173 ALX1Q15699 326 aa11.94□□□□□ -0.5
NUP54-203ENST00000504173 SBK1Q52WX2 424 aa11.94□□□□□ -0.5
NUP54-203ENST00000504173 CTR9Q6PD62 1173 aa11.94□□□□□ -0.5
NUP54-203ENST00000504173 ANO2Q9NQ90 1003 aa11.94□□□□□ -0.5
NUP54-203ENST00000504173 ANGEL1Q9UNK9 670 aaKnown RBP11.94□□□□□ -0.5
NUP54-203ENST00000504173 FAM196BA6NMK8 535 aa11.93□□□□□ -0.5
NUP54-203ENST00000504173 FGAP02671 866 aa11.93□□□□□ -0.5
NUP54-203ENST00000504173 PPARAQ07869 468 aa11.93□□□□□ -0.5
NUP54-203ENST00000504173 C12orf60Q5U649 245 aa11.93□□□□□ -0.5
NUP54-203ENST00000504173 FOXP4Q8IVH2 680 aaPredicted RBP11.93□□□□□ -0.5
NUP54-203ENST00000504173 TDHQ8IZJ6 230 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 178 ms