RNA–Protein interactions for RNA: ENST00000503923.1

VCAN-205, Transcript of versican, humanhuman

TSL 4

Gene VCAN, Length 498 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-205ENST00000503923 GTF3C3Q9Y5Q9 886 aa13.26□□□□□ -0.29
VCAN-205ENST00000503923 CEP350Q5VT06 3117 aa13.26□□□□□ -0.29
VCAN-205ENST00000503923 SMIM22K7EJ46 135 aa13.25□□□□□ -0.29
VCAN-205ENST00000503923 AOC2O75106 756 aa13.25□□□□□ -0.29
VCAN-205ENST00000503923 GDF11O95390 407 aa13.25□□□□□ -0.29
VCAN-205ENST00000503923 PTPRAP18433 802 aa13.25□□□□□ -0.29
VCAN-205ENST00000503923 PDE4BQ07343 736 aa13.25□□□□□ -0.29
VCAN-205ENST00000503923 MKRN3Q13064 507 aaKnown RBP13.25□□□□□ -0.29
VCAN-205ENST00000503923 PPIL2Q13356 520 aa13.25□□□□□ -0.29
VCAN-205ENST00000503923 ABCB5Q2M3G0 1257 aa13.25□□□□□ -0.29
VCAN-205ENST00000503923 CNKSR2Q8WXI2 1034 aa13.25□□□□□ -0.29
VCAN-205ENST00000503923 OTUD5Q96G74 571 aa13.25□□□□□ -0.29
VCAN-205ENST00000503923 CCDC17Q96LX7 622 aa13.25□□□□□ -0.29
VCAN-205ENST00000503923 TBC1D2Q9BYX2 928 aa13.25□□□□□ -0.29
VCAN-205ENST00000503923 CABP5Q9NP86 173 aa13.25□□□□□ -0.29
VCAN-205ENST00000503923 CTNNA3Q9UI47 895 aa13.25□□□□□ -0.29
VCAN-205ENST00000503923 ANAPC4Q9UJX5 808 aa13.25□□□□□ -0.29
VCAN-205ENST00000503923 THSD7BQ9C0I4 1608 aa13.24□□□□□ -0.29
VCAN-205ENST00000503923 GH2P01242 217 aa13.24□□□□□ -0.29
VCAN-205ENST00000503923 GJA5P36382 358 aa13.24□□□□□ -0.29
VCAN-205ENST00000503923 KIF23Q02241 960 aaPredicted RBP13.24□□□□□ -0.29
VCAN-205ENST00000503923 KIAA1211Q6ZU35 1233 aa13.24□□□□□ -0.29
VCAN-205ENST00000503923 REM2Q8IYK8 340 aaPredicted RBP13.24□□□□□ -0.29
VCAN-205ENST00000503923 MKNK2Q9HBH9 465 aa13.24□□□□□ -0.29
VCAN-205ENST00000503923 ZBTB21Q9ULJ3 1066 aa13.24□□□□□ -0.29
VCAN-205ENST00000503923 ZHX2Q9Y6X8 837 aa13.24□□□□□ -0.29
VCAN-205ENST00000503923 MANSC4A6NHS7 340 aaPredicted RBP13.23□□□□□ -0.29
VCAN-205ENST00000503923 USP17L5A8MUK1 530 aa13.23□□□□□ -0.29
VCAN-205ENST00000503923 ZNF213O14771 459 aa13.23□□□□□ -0.29
VCAN-205ENST00000503923 IRF6O14896 467 aa13.23□□□□□ -0.29
VCAN-205ENST00000503923 GTF2A2P52657 109 aa13.23□□□□□ -0.29
VCAN-205ENST00000503923 SREBF2Q12772 1141 aa13.23□□□□□ -0.29
VCAN-205ENST00000503923 IMMTQ16891 758 aaKnown RBP13.23□□□□□ -0.29
VCAN-205ENST00000503923 ZNF444Q8N0Y2 327 aaPredicted RBP13.23□□□□□ -0.29
VCAN-205ENST00000503923 STK11IPQ8N1F8 1099 aa13.23□□□□□ -0.29
VCAN-205ENST00000503923 AS3MTQ9HBK9 375 aa13.23□□□□□ -0.29
VCAN-205ENST00000503923 MPHOSPH10O00566 681 aaKnown RBP13.22□□□□□ -0.29
VCAN-205ENST00000503923 CXCL11O14625 94 aa13.22□□□□□ -0.29
VCAN-205ENST00000503923 RASA1P20936 1047 aa13.22□□□□□ -0.29
VCAN-205ENST00000503923 INHBEP58166 350 aa13.22□□□□□ -0.29
VCAN-205ENST00000503923 JAG1P78504 1218 aa13.22□□□□□ -0.29
VCAN-205ENST00000503923 PTH1RQ03431 593 aa13.22□□□□□ -0.29
VCAN-205ENST00000503923 CTDSPL2Q05D32 466 aa13.22□□□□□ -0.29
VCAN-205ENST00000503923 SNAPC2Q13487 334 aa13.22□□□□□ -0.29
VCAN-205ENST00000503923 TMEM179Q6ZVK1 233 aa13.22□□□□□ -0.29
VCAN-205ENST00000503923 JMYQ8N9B5 988 aa13.22□□□□□ -0.29
VCAN-205ENST00000503923 ZIC5Q96T25 663 aa13.22□□□□□ -0.29
VCAN-205ENST00000503923 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.22□□□□□ -0.29
VCAN-205ENST00000503923 KCNH4Q9UQ05 1017 aa13.22□□□□□ -0.29
VCAN-205ENST00000503923 AFG3L2Q9Y4W6 797 aa13.22□□□□□ -0.29
VCAN-205ENST00000503923 U3KPZ7 1027 aaPredicted RBP13.22□□□□□ -0.29
VCAN-205ENST00000503923 LAMA4Q16363 1823 aa13.22□□□□□ -0.29
VCAN-205ENST00000503923 PHIPQ8WWQ0 1821 aa13.22□□□□□ -0.29
VCAN-205ENST00000503923 PRDM1O75626 825 aa13.21□□□□□ -0.29
VCAN-205ENST00000503923 PCP11498 1178 aaKnown RBP13.21□□□□□ -0.29
VCAN-205ENST00000503923 AKR1B1P15121 316 aa13.21□□□□□ -0.29
VCAN-205ENST00000503923 HAND2P61296 217 aa13.21□□□□□ -0.29
VCAN-205ENST00000503923 MAP2K1Q02750 393 aaPredicted RBP13.21□□□□□ -0.29
VCAN-205ENST00000503923 RAB3GAP1Q15042 981 aa13.21□□□□□ -0.29
VCAN-205ENST00000503923 SHROOM1Q2M3G4 852 aaPredicted RBP13.21□□□□□ -0.29
VCAN-205ENST00000503923 CCDC84Q86UT8 332 aaPredicted RBP13.21□□□□□ -0.29
VCAN-205ENST00000503923 ZNF280CQ8ND82 737 aa13.21□□□□□ -0.29
VCAN-205ENST00000503923 MAP4K1Q92918 833 aa13.21□□□□□ -0.29
VCAN-205ENST00000503923 MS4A4AQ96JQ5 239 aa13.21□□□□□ -0.29
VCAN-205ENST00000503923 WDR18Q9BV38 432 aa13.21□□□□□ -0.29
VCAN-205ENST00000503923 LSG1Q9H089 658 aaKnown RBP13.21□□□□□ -0.29
VCAN-205ENST00000503923 RNF41Q9H4P4 317 aaPredicted RBP13.21□□□□□ -0.29
VCAN-205ENST00000503923 ANO2Q9NQ90 1003 aa13.21□□□□□ -0.29
VCAN-205ENST00000503923 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.21□□□□□ -0.29
VCAN-205ENST00000503923 CCL15-CCL14A0A0B4J2E2 113 aa13.2□□□□□ -0.3
VCAN-205ENST00000503923 TESPA1A2RU30 521 aaPredicted RBP13.2□□□□□ -0.3
VCAN-205ENST00000503923 TRIM75PA6NK02 468 aa13.2□□□□□ -0.3
VCAN-205ENST00000503923 ORC4O43929 436 aa13.2□□□□□ -0.3
VCAN-205ENST00000503923 FGRP09769 529 aa13.2□□□□□ -0.3
VCAN-205ENST00000503923 CETPP11597 493 aa13.2□□□□□ -0.3
VCAN-205ENST00000503923 GUCY1A2P33402 732 aa13.2□□□□□ -0.3
VCAN-205ENST00000503923 TM4SF4P48230 202 aa13.2□□□□□ -0.3
VCAN-205ENST00000503923 SPP2Q13103 211 aa13.2□□□□□ -0.3
VCAN-205ENST00000503923 SEPT2Q15019 361 aa13.2□□□□□ -0.3
VCAN-205ENST00000503923 CCL15Q16663 113 aa13.2□□□□□ -0.3
VCAN-205ENST00000503923 AKNAD1Q5T1N1 836 aa13.2□□□□□ -0.3
VCAN-205ENST00000503923 MFSD6Q6ZSS7 791 aa13.2□□□□□ -0.3
VCAN-205ENST00000503923 STAG1Q8WVM7 1258 aa13.2□□□□□ -0.3
VCAN-205ENST00000503923 A0A0G2JLL6 359 aaPredicted RBP13.19□□□□□ -0.3
VCAN-205ENST00000503923 TSPY3P0CV98 308 aa13.19□□□□□ -0.3
VCAN-205ENST00000503923 TSPY8P0CW00 308 aa13.19□□□□□ -0.3
VCAN-205ENST00000503923 NT5C2P49902 561 aa13.19□□□□□ -0.3
VCAN-205ENST00000503923 OTUD7BQ6GQQ9 843 aa13.19□□□□□ -0.3
VCAN-205ENST00000503923 PRRT2Q7Z6L0 340 aaPredicted RBP13.19□□□□□ -0.3
VCAN-205ENST00000503923 TBC1D10CQ8IV04 446 aa13.19□□□□□ -0.3
VCAN-205ENST00000503923 BEGAINQ9BUH8 593 aa13.19□□□□□ -0.3
VCAN-205ENST00000503923 NBPF3Q9H094 633 aa13.19□□□□□ -0.3
VCAN-205ENST00000503923 KANSL2Q9H9L4 492 aa13.19□□□□□ -0.3
VCAN-205ENST00000503923 TOMM22Q9NS69 142 aa13.19□□□□□ -0.3
VCAN-205ENST00000503923 RBM8AQ9Y5S9 174 aaKnown RBP13.19□□□□□ -0.3
VCAN-205ENST00000503923 PLIN4Q96Q06 1357 aa13.19□□□□□ -0.3
VCAN-205ENST00000503923 PTPRFP10586 1907 aa13.18□□□□□ -0.3
VCAN-205ENST00000503923 GREB1LQ9C091 1923 aaPredicted RBP13.18□□□□□ -0.3
VCAN-205ENST00000503923 TSPY2A6NKD2 308 aa13.18□□□□□ -0.3
VCAN-205ENST00000503923 C19orf81C9J6K1 198 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms