RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 CYP27C1Q4G0S4 372 aa6.4□□□□□ -1.38
SMC4-225ENST00000497203 SNAP47Q5SQN1 464 aa6.4□□□□□ -1.38
SMC4-225ENST00000497203 LCE4AQ5TA78 99 aa6.4□□□□□ -1.38
SMC4-225ENST00000497203 ARMCX6Q7L4S7 300 aa6.4□□□□□ -1.38
SMC4-225ENST00000497203 GOLM1Q8NBJ4 401 aa6.4□□□□□ -1.38
SMC4-225ENST00000497203 KCT2Q8NC54 265 aa6.4□□□□□ -1.38
SMC4-225ENST00000497203 FBXO27Q8NI29 283 aa6.4□□□□□ -1.38
SMC4-225ENST00000497203 GATAD2BQ8WXI9 593 aa6.4□□□□□ -1.38
SMC4-225ENST00000497203 TGIF2Q9GZN2 237 aa6.4□□□□□ -1.38
SMC4-225ENST00000497203 U3KQE9 123 aa6.4□□□□□ -1.38
SMC4-225ENST00000497203 MSMPQ1L6U9 139 aa6.39□□□□□ -1.39
SMC4-225ENST00000497203 C9orf131Q5VYM1 1079 aa6.39□□□□□ -1.39
SMC4-225ENST00000497203 FBXL19Q6PCT2 694 aa6.39□□□□□ -1.39
SMC4-225ENST00000497203 HID1Q8IV36 788 aa6.39□□□□□ -1.39
SMC4-225ENST00000497203 CCSER2Q9H7U1 834 aa6.39□□□□□ -1.39
SMC4-225ENST00000497203 PRDM10Q9NQV6 1147 aa6.39□□□□□ -1.39
SMC4-225ENST00000497203 CORINQ9Y5Q5 1042 aa6.39□□□□□ -1.39
SMC4-225ENST00000497203 TACC3Q9Y6A5 838 aa6.39□□□□□ -1.39
SMC4-225ENST00000497203 ADAMTS4O75173 837 aa6.38□□□□□ -1.39
SMC4-225ENST00000497203 LRIG2O94898 1065 aa6.38□□□□□ -1.39
SMC4-225ENST00000497203 BPNT1O95861 308 aa6.38□□□□□ -1.39
SMC4-225ENST00000497203 PGRP06401 933 aa6.38□□□□□ -1.39
SMC4-225ENST00000497203 EIF4A3P38919 411 aaKnown RBP6.38□□□□□ -1.39
SMC4-225ENST00000497203 GP2P55259 537 aaKnown RBP6.38□□□□□ -1.39
SMC4-225ENST00000497203 DTX1Q86Y01 620 aa6.38□□□□□ -1.39
SMC4-225ENST00000497203 FAM181AQ8N9Y4 354 aa6.38□□□□□ -1.39
SMC4-225ENST00000497203 KCNQ5Q9NR82 932 aa6.38□□□□□ -1.39
SMC4-225ENST00000497203 TJP2Q9UDY2 1190 aa6.38□□□□□ -1.39
SMC4-225ENST00000497203 ZC3H7BQ9UGR2 993 aaKnown RBP6.38□□□□□ -1.39
SMC4-225ENST00000497203 ADAMTS1Q9UHI8 967 aa6.38□□□□□ -1.39
SMC4-225ENST00000497203 RNF114Q9Y508 228 aa6.38□□□□□ -1.39
SMC4-225ENST00000497203 TLR3O15455 904 aaKnown RBP6.37□□□□□ -1.39
SMC4-225ENST00000497203 GREM1O60565 184 aa6.37□□□□□ -1.39
SMC4-225ENST00000497203 SLITRK5O94991 958 aa6.37□□□□□ -1.39
SMC4-225ENST00000497203 CAP2P40123 477 aa6.37□□□□□ -1.39
SMC4-225ENST00000497203 RAD51AP2Q09MP3 1159 aa6.37□□□□□ -1.39
SMC4-225ENST00000497203 NAALADL2Q58DX5 795 aa6.37□□□□□ -1.39
SMC4-225ENST00000497203 PRAMEF13Q5VWM6 474 aa6.37□□□□□ -1.39
SMC4-225ENST00000497203 FAM196AQ6ZSG2 479 aa6.37□□□□□ -1.39
SMC4-225ENST00000497203 FAM214BQ7L5A3 538 aa6.37□□□□□ -1.39
SMC4-225ENST00000497203 USP48Q86UV5 1035 aa6.37□□□□□ -1.39
SMC4-225ENST00000497203 ZNF654Q8IZM8 581 aa6.37□□□□□ -1.39
SMC4-225ENST00000497203 ZNF296Q8WUU4 475 aaPredicted RBP6.37□□□□□ -1.39
SMC4-225ENST00000497203 HEXIM2Q96MH2 286 aaKnown RBP6.37□□□□□ -1.39
SMC4-225ENST00000497203 FOXQ1Q9C009 403 aa6.37□□□□□ -1.39
SMC4-225ENST00000497203 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.37□□□□□ -1.39
SMC4-225ENST00000497203 POLR3KQ9Y2Y1 108 aaPredicted RBP6.37□□□□□ -1.39
SMC4-225ENST00000497203 RBAK-RBAKDNI3L0D1 243 aa6.36□□□□□ -1.39
SMC4-225ENST00000497203 GRIN3BO60391 1043 aa6.36□□□□□ -1.39
SMC4-225ENST00000497203 EOMESO95936 686 aa6.36□□□□□ -1.39
SMC4-225ENST00000497203 CRKP46108 304 aa6.36□□□□□ -1.39
SMC4-225ENST00000497203 PDE4BQ07343 736 aa6.36□□□□□ -1.39
SMC4-225ENST00000497203 GNL2Q13823 731 aaKnown RBP6.36□□□□□ -1.39
SMC4-225ENST00000497203 MPP2Q14168 576 aa6.36□□□□□ -1.39
SMC4-225ENST00000497203 XAGE3Q8WTP9 111 aa6.36□□□□□ -1.39
SMC4-225ENST00000497203 ACSF2Q96CM8 615 aaPredicted RBP6.36□□□□□ -1.39
SMC4-225ENST00000497203 DPH2Q9BQC3 489 aaPredicted RBP6.36□□□□□ -1.39
SMC4-225ENST00000497203 SUPT16HQ9Y5B9 1047 aaKnown RBP6.36□□□□□ -1.39
SMC4-225ENST00000497203 CNTNAP4Q9C0A0 1308 aa6.35□□□□□ -1.39
SMC4-225ENST00000497203 CST3P01034 146 aaPredicted RBP6.35□□□□□ -1.39
SMC4-225ENST00000497203 PLCG1P19174 1290 aa6.35□□□□□ -1.39
SMC4-225ENST00000497203 SF3A1Q15459 793 aaKnown RBP6.35□□□□□ -1.39
SMC4-225ENST00000497203 ZNF394Q53GI3 561 aa6.35□□□□□ -1.39
SMC4-225ENST00000497203 DIEXFQ68CQ4 756 aaKnown RBP6.35□□□□□ -1.39
SMC4-225ENST00000497203 REC114Q7Z4M0 266 aa6.35□□□□□ -1.39
SMC4-225ENST00000497203 MRPL41Q8IXM3 137 aaKnown RBP6.35□□□□□ -1.39
SMC4-225ENST00000497203 PLD6Q8N2A8 252 aaKnown RBP6.35□□□□□ -1.39
SMC4-225ENST00000497203 RIN3Q8TB24 985 aa6.35□□□□□ -1.39
SMC4-225ENST00000497203 SREK1Q8WXA9 508 aaKnown RBP6.35□□□□□ -1.39
SMC4-225ENST00000497203 TMEM87BQ96K49 555 aa6.35□□□□□ -1.39
SMC4-225ENST00000497203 MIPEPQ99797 713 aa6.35□□□□□ -1.39
SMC4-225ENST00000497203 UBP1Q9NZI7 540 aa6.35□□□□□ -1.39
SMC4-225ENST00000497203 DDX41Q9UJV9 622 aaKnown RBP6.35□□□□□ -1.39
SMC4-225ENST00000497203 ADAM30Q9UKF2 790 aa6.35□□□□□ -1.39
SMC4-225ENST00000497203 PCDHGB7Q9Y5F8 929 aa6.35□□□□□ -1.39
SMC4-225ENST00000497203 PRR36Q9H6K5 1346 aa6.34□□□□□ -1.39
SMC4-225ENST00000497203 OXCT1P55809 520 aa6.34□□□□□ -1.39
SMC4-225ENST00000497203 SLC6A19Q695T7 634 aa6.34□□□□□ -1.39
SMC4-225ENST00000497203 NFXL1Q6ZNB6 911 aa6.34□□□□□ -1.39
SMC4-225ENST00000497203 MCATQ8IVS2 390 aaKnown RBP6.34□□□□□ -1.39
SMC4-225ENST00000497203 MFSD2AQ8NA29 543 aa6.34□□□□□ -1.39
SMC4-225ENST00000497203 LRRC3Q9BY71 257 aa6.34□□□□□ -1.39
SMC4-225ENST00000497203 USP35Q9P2H5 1018 aa6.34□□□□□ -1.39
SMC4-225ENST00000497203 UPK3BL1B0FP48 263 aa6.33□□□□□ -1.4
SMC4-225ENST00000497203 UPK3BL2E5RIL1 263 aa6.33□□□□□ -1.4
SMC4-225ENST00000497203 HTR3BO95264 441 aa6.33□□□□□ -1.4
SMC4-225ENST00000497203 PRNPP04156 253 aa6.33□□□□□ -1.4
SMC4-225ENST00000497203 JAG1P78504 1218 aa6.33□□□□□ -1.4
SMC4-225ENST00000497203 TMEM201Q5SNT2 666 aa6.33□□□□□ -1.4
SMC4-225ENST00000497203 LETMD1Q6P1Q0 360 aa6.33□□□□□ -1.4
SMC4-225ENST00000497203 SLC43A3Q8NBI5 491 aa6.33□□□□□ -1.4
SMC4-225ENST00000497203 KRTAP9-8Q9BYQ0 159 aa6.33□□□□□ -1.4
SMC4-225ENST00000497203 BRMS1Q9HCU9 246 aa6.33□□□□□ -1.4
SMC4-225ENST00000497203 BSDC1Q9NW68 430 aaPredicted RBP6.33□□□□□ -1.4
SMC4-225ENST00000497203 REV1Q9UBZ9 1251 aa6.33□□□□□ -1.4
SMC4-225ENST00000497203 CCDC39Q9UFE4 941 aa6.33□□□□□ -1.4
SMC4-225ENST00000497203 PLAGL2Q9UPG8 496 aa6.33□□□□□ -1.4
SMC4-225ENST00000497203 ROBO2Q9HCK4 1378 aa6.32□□□□□ -1.4
SMC4-225ENST00000497203 IGF2BP3O00425 579 aaKnown RBP eCLIP6.32□□□□□ -1.4
SMC4-225ENST00000497203 DNAJA2O60884 412 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms