RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 DISP3Q9P2K9 1392 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 GPR182O15218 404 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 BMP3P12645 472 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 PCDH1Q08174 1060 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 ZNF423Q2M1K9 1284 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 FDX2Q6P4F2 183 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 CCNJLQ8IV13 435 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 CCER1Q8TC90 406 aaPredicted RBP6.93□□□□□ -1.3
CSMD3-208ENST00000497026 ORAI2Q96SN7 254 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 FAM129BQ96TA1 746 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 RNF208Q9H0X6 261 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 C7orf69Q9H7B7 122 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 NPHS2Q9NP85 383 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 LRP6O75581 1613 aa6.92□□□□□ -1.3
CSMD3-208ENST00000497026 KIF1AQ12756 1690 aa6.92□□□□□ -1.3
CSMD3-208ENST00000497026 LOC100289279A0A1B0GTE1 492 aa6.92□□□□□ -1.3
CSMD3-208ENST00000497026 CPNE3O75131 537 aaKnown RBP6.92□□□□□ -1.3
CSMD3-208ENST00000497026 SSTR4P31391 388 aa6.92□□□□□ -1.3
CSMD3-208ENST00000497026 C12orf50Q8NA57 414 aaPredicted RBP6.92□□□□□ -1.3
CSMD3-208ENST00000497026 DDX17Q92841 729 aaKnown RBP6.92□□□□□ -1.3
CSMD3-208ENST00000497026 MYRFLQ96LU7 910 aa6.92□□□□□ -1.3
CSMD3-208ENST00000497026 PRAM1Q96QH2 718 aa6.92□□□□□ -1.3
CSMD3-208ENST00000497026 EHD4Q9H223 541 aa6.92□□□□□ -1.3
CSMD3-208ENST00000497026 BIN2Q9UBW5 565 aaPredicted RBP6.92□□□□□ -1.3
CSMD3-208ENST00000497026 TRAK1Q9UPV9 953 aa6.92□□□□□ -1.3
CSMD3-208ENST00000497026 PXDNQ92626 1479 aa6.91□□□□□ -1.3
CSMD3-208ENST00000497026 JCADQ9P266 1359 aa6.91□□□□□ -1.3
CSMD3-208ENST00000497026 SOWAHDA6NJG2 315 aa6.91□□□□□ -1.3
CSMD3-208ENST00000497026 IGLV1-40P01703 118 aa6.91□□□□□ -1.3
CSMD3-208ENST00000497026 DRD2P14416 443 aa6.91□□□□□ -1.3
CSMD3-208ENST00000497026 PDE3BQ13370 1112 aa6.91□□□□□ -1.3
CSMD3-208ENST00000497026 SAFB2Q14151 953 aaKnown RBP eCLIP6.91□□□□□ -1.3
CSMD3-208ENST00000497026 NUTM2GQ5VZR2 741 aa6.91□□□□□ -1.3
CSMD3-208ENST00000497026 ANKRD34AQ69YU3 496 aa6.91□□□□□ -1.3
CSMD3-208ENST00000497026 FAM20CQ8IXL6 584 aa6.91□□□□□ -1.3
CSMD3-208ENST00000497026 FMNL2Q96PY5 1086 aa6.91□□□□□ -1.3
CSMD3-208ENST00000497026 RNF112Q9ULX5 631 aa6.91□□□□□ -1.3
CSMD3-208ENST00000497026 COL22A1Q8NFW1 1626 aaPredicted RBP6.9□□□□□ -1.3
CSMD3-208ENST00000497026 TOPAZ1Q8N9V7 1692 aa6.9□□□□□ -1.3
CSMD3-208ENST00000497026 QRICH2Q9H0J4 1663 aa6.9□□□□□ -1.3
CSMD3-208ENST00000497026 EIF1AYO14602 144 aaKnown RBP6.9□□□□□ -1.31
CSMD3-208ENST00000497026 GAS2O43903 313 aaKnown RBP6.9□□□□□ -1.31
CSMD3-208ENST00000497026 CTSBP07858 339 aa6.9□□□□□ -1.31
CSMD3-208ENST00000497026 SGO2Q562F6 1265 aa6.9□□□□□ -1.31
CSMD3-208ENST00000497026 BEND4Q6ZU67 534 aa6.9□□□□□ -1.31
CSMD3-208ENST00000497026 CLEC4MQ9H2X3 399 aaPredicted RBP6.9□□□□□ -1.31
CSMD3-208ENST00000497026 TULP4Q9NRJ4 1543 aa6.9□□□□□ -1.31
CSMD3-208ENST00000497026 PNPLA6Q8IY17 1366 aa6.89□□□□□ -1.31
CSMD3-208ENST00000497026 ATP7BP35670 1465 aa6.89□□□□□ -1.31
CSMD3-208ENST00000497026 GADD45BO75293 160 aaPredicted RBP6.89□□□□□ -1.31
CSMD3-208ENST00000497026 TGFB1P01137 390 aa6.89□□□□□ -1.31
CSMD3-208ENST00000497026 IGHA2P01877 340 aa6.89□□□□□ -1.31
CSMD3-208ENST00000497026 NEFLP07196 543 aa6.89□□□□□ -1.31
CSMD3-208ENST00000497026 RXRBP28702 533 aa6.89□□□□□ -1.31
CSMD3-208ENST00000497026 PDE4CQ08493 712 aa6.89□□□□□ -1.31
CSMD3-208ENST00000497026 UVSSAQ2YD98 709 aa6.89□□□□□ -1.31
CSMD3-208ENST00000497026 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.89□□□□□ -1.31
CSMD3-208ENST00000497026 CCDC74AQ96AQ1 378 aa6.89□□□□□ -1.31
CSMD3-208ENST00000497026 TMPRSS13Q9BYE2 586 aa6.89□□□□□ -1.31
CSMD3-208ENST00000497026 RGS17Q9UGC6 210 aaPredicted RBP6.89□□□□□ -1.31
CSMD3-208ENST00000497026 PRR36Q9H6K5 1346 aa6.89□□□□□ -1.31
CSMD3-208ENST00000497026 ANKARQ7Z5J8 1434 aa6.88□□□□□ -1.31
CSMD3-208ENST00000497026 ITSN1Q15811 1721 aa6.88□□□□□ -1.31
CSMD3-208ENST00000497026 TRPM3Q9HCF6 1732 aaPredicted RBP6.88□□□□□ -1.31
CSMD3-208ENST00000497026 MEGF11A6BM72 1044 aa6.88□□□□□ -1.31
CSMD3-208ENST00000497026 ECEL1O95672 775 aa6.88□□□□□ -1.31
CSMD3-208ENST00000497026 MAOBP27338 520 aa6.88□□□□□ -1.31
CSMD3-208ENST00000497026 ZNF157P51786 506 aaPredicted RBP6.88□□□□□ -1.31
CSMD3-208ENST00000497026 NFIAQ12857 509 aa6.88□□□□□ -1.31
CSMD3-208ENST00000497026 NBPF8Q3BBV2 869 aa6.88□□□□□ -1.31
CSMD3-208ENST00000497026 KIAA0319Q5VV43 1072 aa6.88□□□□□ -1.31
CSMD3-208ENST00000497026 EPS8L3Q8TE67 593 aaKnown RBP6.88□□□□□ -1.31
CSMD3-208ENST00000497026 HIRIP3Q9BW71 556 aaPredicted RBP6.88□□□□□ -1.31
CSMD3-208ENST00000497026 SOX17Q9H6I2 414 aaPredicted RBP6.88□□□□□ -1.31
CSMD3-208ENST00000497026 GPRASP1Q5JY77 1395 aa6.88□□□□□ -1.31
CSMD3-208ENST00000497026 ABCA3Q99758 1704 aa6.88□□□□□ -1.31
CSMD3-208ENST00000497026 RALGAPBQ86X10 1494 aa6.88□□□□□ -1.31
CSMD3-208ENST00000497026 RNF43Q68DV7 783 aa6.87□□□□□ -1.31
CSMD3-208ENST00000497026 PI16Q6UXB8 463 aa6.87□□□□□ -1.31
CSMD3-208ENST00000497026 CLEC10AQ8IUN9 316 aa6.87□□□□□ -1.31
CSMD3-208ENST00000497026 CITED4Q96RK1 184 aa6.87□□□□□ -1.31
CSMD3-208ENST00000497026 CSRNP1Q96S65 589 aa6.87□□□□□ -1.31
CSMD3-208ENST00000497026 ANP32EQ9BTT0 268 aa6.87□□□□□ -1.31
CSMD3-208ENST00000497026 NRSN2Q9GZP1 204 aa6.87□□□□□ -1.31
CSMD3-208ENST00000497026 PCMTD2Q9NV79 361 aa6.87□□□□□ -1.31
CSMD3-208ENST00000497026 POGKQ9P215 609 aa6.87□□□□□ -1.31
CSMD3-208ENST00000497026 SPATA31A6Q5VVP1 1343 aa6.87□□□□□ -1.31
CSMD3-208ENST00000497026 NPHP3Q7Z494 1330 aa6.87□□□□□ -1.31
CSMD3-208ENST00000497026 ALS2Q96Q42 1657 aa6.87□□□□□ -1.31
CSMD3-208ENST00000497026 MARF1Q9Y4F3 1742 aaKnown RBP6.86□□□□□ -1.31
CSMD3-208ENST00000497026 CRYBG1Q9Y4K1 1723 aa6.86□□□□□ -1.31
CSMD3-208ENST00000497026 MED26O95402 600 aa6.86□□□□□ -1.31
CSMD3-208ENST00000497026 MAP4P27816 1152 aaKnown RBP6.86□□□□□ -1.31
CSMD3-208ENST00000497026 XPCQ01831 940 aaPredicted RBP6.86□□□□□ -1.31
CSMD3-208ENST00000497026 FZD5Q13467 585 aa6.86□□□□□ -1.31
CSMD3-208ENST00000497026 EXOSC6Q5RKV6 272 aaKnown RBP6.86□□□□□ -1.31
CSMD3-208ENST00000497026 TMC7Q7Z402 723 aa6.86□□□□□ -1.31
CSMD3-208ENST00000497026 ZDHHC13Q8IUH4 622 aa6.86□□□□□ -1.31
CSMD3-208ENST00000497026 SMG8Q8ND04 991 aaKnown RBP6.86□□□□□ -1.31
CSMD3-208ENST00000497026 LRRC59Q96AG4 307 aaKnown RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms