RNA–Protein interactions for RNA: ENST00000493682.6

COL9A1-210, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 5

Gene COL9A1, Length 1,117 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-210ENST00000493682 SHROOM1Q2M3G4 852 aaPredicted RBP21.28■■□□□ 1
COL9A1-210ENST00000493682 CRACR2BQ8N4Y2 399 aaPredicted RBP21.28■■□□□ 1
COL9A1-210ENST00000493682 TMOD4Q9NZQ9 345 aa21.28■■□□□ 1
COL9A1-210ENST00000493682 NOP58Q9Y2X3 529 aaKnown RBP21.28■■□□□ 1
COL9A1-210ENST00000493682 IGSF3O75054 1194 aa21.27■■□□□ 1
COL9A1-210ENST00000493682 HMGCRP04035 888 aa21.27■■□□□ 1
COL9A1-210ENST00000493682 HOXA7P31268 230 aaPredicted RBP21.27■■□□□ 1
COL9A1-210ENST00000493682 IRX3P78415 501 aaPredicted RBP21.27■■□□□ 1
COL9A1-210ENST00000493682 P2RX7Q99572 595 aaKnown RBP21.27■■□□□ 1
COL9A1-210ENST00000493682 TRIM34Q9BYJ4 488 aa21.27■■□□□ 1
COL9A1-210ENST00000493682 SAP30BPQ9UHR5 308 aaKnown RBP21.27■■□□□ 1
COL9A1-210ENST00000493682 DBNLQ9UJU6 430 aaKnown RBP21.27■■□□□ 1
COL9A1-210ENST00000493682 C19orf81C9J6K1 198 aa21.26■□□□□ 0.99
COL9A1-210ENST00000493682 EVI5O60447 810 aa21.26■□□□□ 0.99
COL9A1-210ENST00000493682 GDF11O95390 407 aa21.26■□□□□ 0.99
COL9A1-210ENST00000493682 PAWRQ96IZ0 340 aaKnown RBP21.26■□□□□ 0.99
COL9A1-210ENST00000493682 GINM1Q9NU53 330 aa21.26■□□□□ 0.99
COL9A1-210ENST00000493682 TLR7Q9NYK1 1049 aaKnown RBP21.26■□□□□ 0.99
COL9A1-210ENST00000493682 CDK5RAP2Q96SN8 1893 aa21.26■□□□□ 0.99
COL9A1-210ENST00000493682 FOCADQ5VW36 1801 aa21.25■□□□□ 0.99
COL9A1-210ENST00000493682 PEX10O60683 326 aa21.25■□□□□ 0.99
COL9A1-210ENST00000493682 DYNLL1P63167 89 aaKnown RBP21.25■□□□□ 0.99
COL9A1-210ENST00000493682 TRIM32Q13049 653 aa21.25■□□□□ 0.99
COL9A1-210ENST00000493682 FTSJ3Q8IY81 847 aaKnown RBP21.25■□□□□ 0.99
COL9A1-210ENST00000493682 CCDC8Q9H0W5 538 aaPredicted RBP21.25■□□□□ 0.99
COL9A1-210ENST00000493682 TXNRD2Q9NNW7 524 aa21.25■□□□□ 0.99
COL9A1-210ENST00000493682 ZBTB21Q9ULJ3 1066 aa21.25■□□□□ 0.99
COL9A1-210ENST00000493682 MYO5AQ9Y4I1 1855 aaKnown RBP21.24■□□□□ 0.99
COL9A1-210ENST00000493682 RANBP2P49792 3224 aaKnown RBP21.24■□□□□ 0.99
COL9A1-210ENST00000493682 USP17L10C9JJH3 530 aa21.24■□□□□ 0.99
COL9A1-210ENST00000493682 RLBP1P12271 317 aa21.24■□□□□ 0.99
COL9A1-210ENST00000493682 CYP7A1P22680 504 aa21.24■□□□□ 0.99
COL9A1-210ENST00000493682 HERVK_113P62684 666 aa21.24■□□□□ 0.99
COL9A1-210ENST00000493682 NECAB2Q7Z6G3 386 aa21.24■□□□□ 0.99
COL9A1-210ENST00000493682 ITPRIPQ8IWB1 547 aa21.24■□□□□ 0.99
COL9A1-210ENST00000493682 GPRC5AQ8NFJ5 357 aa21.24■□□□□ 0.99
COL9A1-210ENST00000493682 DIS3LQ8TF46 1054 aaKnown RBP21.24■□□□□ 0.99
COL9A1-210ENST00000493682 EAF2Q96CJ1 260 aaPredicted RBP21.24■□□□□ 0.99
COL9A1-210ENST00000493682 RPTORQ8N122 1335 aa21.24■□□□□ 0.99
COL9A1-210ENST00000493682 IDH1O75874 414 aaKnown RBP21.23■□□□□ 0.99
COL9A1-210ENST00000493682 HLA-DOAP06340 250 aa21.23■□□□□ 0.99
COL9A1-210ENST00000493682 TRIB2Q92519 343 aa21.23■□□□□ 0.99
COL9A1-210ENST00000493682 HMX1Q9NP08 348 aaPredicted RBP21.23■□□□□ 0.99
COL9A1-210ENST00000493682 PLXNB2O15031 1838 aa21.22■□□□□ 0.99
COL9A1-210ENST00000493682 CYP2B6P20813 491 aa21.22■□□□□ 0.99
COL9A1-210ENST00000493682 ANKLE1Q8NAG6 615 aa21.22■□□□□ 0.99
COL9A1-210ENST00000493682 EMILIN3Q9NT22 766 aa21.22■□□□□ 0.99
COL9A1-210ENST00000493682 RBPJLQ9UBG7 517 aa21.22■□□□□ 0.99
COL9A1-210ENST00000493682 MIGA1Q8NAN2 632 aa21.21■□□□□ 0.99
COL9A1-210ENST00000493682 SZT2Q5T011 3432 aa21.2■□□□□ 0.98
COL9A1-210ENST00000493682 GH2P01242 217 aa21.2■□□□□ 0.98
COL9A1-210ENST00000493682 XRCC5P13010 732 aaKnown RBP21.2■□□□□ 0.98
COL9A1-210ENST00000493682 Q3C1V9 767 aa21.2■□□□□ 0.98
COL9A1-210ENST00000493682 USP17L2Q6R6M4 530 aa21.2■□□□□ 0.98
COL9A1-210ENST00000493682 MAGEB6Q8N7X4 407 aa21.2■□□□□ 0.98
COL9A1-210ENST00000493682 SOCS4Q8WXH5 440 aa21.2■□□□□ 0.98
COL9A1-210ENST00000493682 NUDT12Q9BQG2 462 aa21.2■□□□□ 0.98
COL9A1-210ENST00000493682 NDUFB9Q9Y6M9 179 aa21.2■□□□□ 0.98
COL9A1-210ENST00000493682 A0A1W2PPC1 479 aa21.19■□□□□ 0.98
COL9A1-210ENST00000493682 MAPK4P31152 587 aa21.19■□□□□ 0.98
COL9A1-210ENST00000493682 USP5P45974 858 aa21.19■□□□□ 0.98
COL9A1-210ENST00000493682 MNX1P50219 401 aaPredicted RBP21.19■□□□□ 0.98
COL9A1-210ENST00000493682 ERVK-9P63128 1117 aa21.19■□□□□ 0.98
COL9A1-210ENST00000493682 ERVK-24P63145 666 aa21.19■□□□□ 0.98
COL9A1-210ENST00000493682 HNRNPUQ00839 825 aaKnown RBP eCLIP21.19■□□□□ 0.98
COL9A1-210ENST00000493682 MAP3K21Q5TCX8 1036 aa21.19■□□□□ 0.98
COL9A1-210ENST00000493682 TATDN1Q6P1N9 297 aa21.19■□□□□ 0.98
COL9A1-210ENST00000493682 POTEEQ6S8J3 1075 aa21.19■□□□□ 0.98
COL9A1-210ENST00000493682 CERS3Q8IU89 383 aa21.19■□□□□ 0.98
COL9A1-210ENST00000493682 NBPF3Q9H094 633 aa21.19■□□□□ 0.98
COL9A1-210ENST00000493682 ANTXR1Q9H6X2 564 aa21.19■□□□□ 0.98
COL9A1-210ENST00000493682 STAP2Q9UGK3 403 aa21.19■□□□□ 0.98
COL9A1-210ENST00000493682 PRKAR2AP13861 404 aaKnown RBP21.18■□□□□ 0.98
COL9A1-210ENST00000493682 CEP85Q6P2H3 762 aa21.18■□□□□ 0.98
COL9A1-210ENST00000493682 GTF3C2Q8WUA4 911 aaPredicted RBP21.18■□□□□ 0.98
COL9A1-210ENST00000493682 PORCNQ9H237 461 aa21.18■□□□□ 0.98
COL9A1-210ENST00000493682 SERPINB13Q9UIV8 391 aa21.18■□□□□ 0.98
COL9A1-210ENST00000493682 ALPK3Q96L96 1907 aa21.17■□□□□ 0.98
COL9A1-210ENST00000493682 MAP3K12Q12852 859 aa21.17■□□□□ 0.98
COL9A1-210ENST00000493682 PDE3AQ14432 1141 aa21.17■□□□□ 0.98
COL9A1-210ENST00000493682 C7orf61Q8IZ16 206 aa21.17■□□□□ 0.98
COL9A1-210ENST00000493682 USP6NLQ92738 828 aa21.17■□□□□ 0.98
COL9A1-210ENST00000493682 C12orf42Q96LP6 360 aa21.17■□□□□ 0.98
COL9A1-210ENST00000493682 PAGR1Q9BTK6 254 aa21.17■□□□□ 0.98
COL9A1-210ENST00000493682 EHD4Q9H223 541 aa21.17■□□□□ 0.98
COL9A1-210ENST00000493682 OGDHLQ9ULD0 1010 aa21.17■□□□□ 0.98
COL9A1-210ENST00000493682 EXOC6BQ9Y2D4 811 aa21.17■□□□□ 0.98
COL9A1-210ENST00000493682 MYH1P12882 1939 aa21.16■□□□□ 0.98
COL9A1-210ENST00000493682 ZYXQ15942 572 aaKnown RBP21.16■□□□□ 0.98
COL9A1-210ENST00000493682 GPR142Q7Z601 462 aa21.16■□□□□ 0.98
COL9A1-210ENST00000493682 AACSQ86V21 672 aa21.16■□□□□ 0.98
COL9A1-210ENST00000493682 CCAR1Q8IX12 1150 aaKnown RBP21.16■□□□□ 0.98
COL9A1-210ENST00000493682 TRMT44Q8IYL2 757 aaKnown RBP21.16■□□□□ 0.98
COL9A1-210ENST00000493682 FEZ1Q99689 392 aa21.16■□□□□ 0.98
COL9A1-210ENST00000493682 ZKSCAN1P17029 563 aaPredicted RBP21.15■□□□□ 0.98
COL9A1-210ENST00000493682 RAB3GAP1Q15042 981 aa21.15■□□□□ 0.98
COL9A1-210ENST00000493682 MORN1Q5T089 497 aa21.15■□□□□ 0.98
COL9A1-210ENST00000493682 TMED8Q6PL24 325 aaPredicted RBP21.15■□□□□ 0.98
COL9A1-210ENST00000493682 PLEKHH3Q7Z736 793 aa21.15■□□□□ 0.98
COL9A1-210ENST00000493682 TTC6Q86TZ1 520 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms