RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PFKFB2O60825 505 aa12.21□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CDK5RAP3Q96JB5 506 aa12.21□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ANKRD2Q9GZV1 360 aa12.21□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ANO10Q9NW15 660 aa12.21□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 UBA5Q9GZZ9 404 aa12.21□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 CPDO75976 1380 aa12.21□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 ZSCAN12O43309 604 aa12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 LDHCP07864 332 aa12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 BRD2P25440 801 aaKnown RBP12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 SPTY2D1Q68D10 685 aaPredicted RBP12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 TTF2Q9UNY4 1162 aaKnown RBP12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 PHACTR2O75167 634 aa12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 ZNF34Q8IZ26 560 aa12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 GPR108Q9NPR9 543 aa12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 USP17L3A6NCW0 530 aa12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 USP17L4A6NCW7 530 aa12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 MMP10P09238 476 aa12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 IDEP14735 1019 aa12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 ENOX2Q16206 610 aaKnown RBP12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 USP17L1Q7RTZ2 530 aa12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 MON2Q7Z3U7 1717 aa12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 RPS6KA4O75676 772 aa12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 OAS2P29728 719 aaKnown RBP12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 GNG11P61952 73 aa12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 UBE3CQ15386 1083 aa12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 TSR1Q2NL82 804 aaKnown RBP12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 ANO1Q5XXA6 986 aa12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 LRRC47Q8N1G4 583 aaKnown RBP12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 MRVI1Q9Y6F6 885 aa12.2□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 CDC27P30260 824 aa12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 MYSM1Q5VVJ2 828 aa12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 FAM84BQ96KN1 310 aaPredicted RBP12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 GBP3Q9H0R5 595 aa12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 UTYO14607 1347 aa12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 SPATA31A5Q5VU36 1347 aa12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 FRMPD2Q68DX3 1309 aaPredicted RBP12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 SPATA31A7Q8IWB4 1347 aa12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 SHTN1A0MZ66 631 aa12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 POLR2DO15514 142 aaKnown RBP12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 NAPAP54920 295 aa12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 RAD51AP2Q09MP3 1159 aa12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 CLEC10AQ8IUN9 316 aa12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 CAVIN2O95810 425 aa12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 KRT18P05783 430 aaKnown RBP12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 CSF1RP07333 972 aa12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 GNAT2P19087 354 aa12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 TXLNAP40222 546 aa12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 TRIM28Q13263 835 aaKnown RBP12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 PRKG1Q13976 671 aa12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 TRMT44Q8IYL2 757 aaKnown RBP12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 GRAMD1CQ8IYS0 662 aa12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 RBM17Q96I25 401 aaKnown RBP12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 PCDHA7Q9UN72 937 aa12.19□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 LRP10Q7Z4F1 713 aa12.18□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 FANCBQ8NB91 859 aa12.18□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 NARFQ9UHQ1 456 aa12.18□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 NTSR2O95665 410 aa12.18□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 BTDP43251 543 aa12.18□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 ZNF75DP51815 510 aa12.18□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 NDUFA8P51970 172 aa12.18□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 LETM2Q2VYF4 491 aa12.18□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 PPM1EQ8WY54 764 aa12.18□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 CBX8Q9HC52 389 aa12.18□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 GUCY1A2P33402 732 aa12.18□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 TNNI2P48788 182 aa12.18□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 EVX2Q03828 476 aa12.18□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 SYCP1Q15431 976 aa12.18□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 FBXO18Q8NFZ0 1043 aa12.18□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 CAGE1Q8TC20 777 aa12.18□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 CRACR2AQ9BSW2 395 aa12.18□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 CARMIL3Q8ND23 1372 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 PLEKHA8P1O95397 391 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 EVCP57679 992 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 PNOCQ13519 176 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 UBE4AQ14139 1066 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 KCNG4Q8TDN1 519 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 SECISBP2LQ93073 1101 aaKnown RBP12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 PGBD1Q96JS3 809 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 TMEM87BQ96K49 555 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 JRKLQ9Y4A0 524 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 LOC102724159A0A0B4J2E5 919 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 GSG1L2A8MUP6 293 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 IPO7O95373 1038 aaKnown RBP12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 MAP2K2P36507 400 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 PWP2Q15269 919 aaKnown RBP12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 STX1AQ16623 288 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 ICE2Q659A1 982 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 FBXO38Q6PIJ6 1188 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 TEX2Q8IWB9 1127 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 SRRTQ9BXP5 876 aaKnown RBP12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 MORC2Q9Y6X9 1032 aaPredicted RBP12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 NALCNQ8IZF0 1738 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 NFAT5O94916 1531 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 TRIM75PA6NK02 468 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 MYO1CO00159 1063 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 ZNF202O95125 648 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 E2F4Q16254 413 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 KIF4BQ2VIQ3 1234 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 SPTLC3Q9NUV7 552 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms