RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 CCDC136Q96JN2 1154 aa16.17■□□□□ 0.18
HDAC3-213ENST00000492506 P2RX7Q99572 595 aaKnown RBP16.17■□□□□ 0.18
HDAC3-213ENST00000492506 UBE2OQ9C0C9 1292 aaKnown RBP16.17■□□□□ 0.18
HDAC3-213ENST00000492506 BACE1P56817 501 aa16.16■□□□□ 0.18
HDAC3-213ENST00000492506 CACNB2Q08289 660 aaPredicted RBP16.16■□□□□ 0.18
HDAC3-213ENST00000492506 MTMR2Q13614 643 aa16.16■□□□□ 0.18
HDAC3-213ENST00000492506 MVPQ14764 893 aaKnown RBP16.16■□□□□ 0.18
HDAC3-213ENST00000492506 LHX8Q68G74 356 aa16.16■□□□□ 0.18
HDAC3-213ENST00000492506 MEIS3Q99687 375 aa16.16■□□□□ 0.18
HDAC3-213ENST00000492506 NUDT12Q9BQG2 462 aa16.16■□□□□ 0.18
HDAC3-213ENST00000492506 AS3MTQ9HBK9 375 aa16.16■□□□□ 0.18
HDAC3-213ENST00000492506 SMC4Q9NTJ3 1288 aa16.16■□□□□ 0.18
HDAC3-213ENST00000492506 RBPJLQ9UBG7 517 aa16.16■□□□□ 0.18
HDAC3-213ENST00000492506 HERC5Q9UII4 1024 aaKnown RBP16.16■□□□□ 0.18
HDAC3-213ENST00000492506 PRUNE2Q8WUY3 3088 aa16.16■□□□□ 0.18
HDAC3-213ENST00000492506 LDHCP07864 332 aa16.15■□□□□ 0.18
HDAC3-213ENST00000492506 HERVK_113P62684 666 aa16.15■□□□□ 0.18
HDAC3-213ENST00000492506 GSTO1P78417 241 aa16.15■□□□□ 0.18
HDAC3-213ENST00000492506 LRRC26Q2I0M4 334 aa16.15■□□□□ 0.18
HDAC3-213ENST00000492506 Q3C1V9 767 aa16.15■□□□□ 0.18
HDAC3-213ENST00000492506 SPATA5Q8NB90 893 aa16.15■□□□□ 0.18
HDAC3-213ENST00000492506 GPRC5AQ8NFJ5 357 aa16.15■□□□□ 0.18
HDAC3-213ENST00000492506 SOCS4Q8WXH5 440 aa16.15■□□□□ 0.18
HDAC3-213ENST00000492506 DNAJC18Q9H819 358 aa16.15■□□□□ 0.18
HDAC3-213ENST00000492506 ZBTB47Q9UFB7 747 aaPredicted RBP16.15■□□□□ 0.18
HDAC3-213ENST00000492506 AKAP2Q9Y2D5 859 aa16.15■□□□□ 0.18
HDAC3-213ENST00000492506 LTBP2Q14767 1821 aa16.15■□□□□ 0.18
HDAC3-213ENST00000492506 CDH23Q9H251 3354 aa16.14■□□□□ 0.17
HDAC3-213ENST00000492506 CCND3P30281 292 aaPredicted RBP16.14■□□□□ 0.17
HDAC3-213ENST00000492506 IRX3P78415 501 aaPredicted RBP16.14■□□□□ 0.17
HDAC3-213ENST00000492506 CCL14Q16627 93 aa16.14■□□□□ 0.17
HDAC3-213ENST00000492506 SHROOM1Q2M3G4 852 aaPredicted RBP16.14■□□□□ 0.17
HDAC3-213ENST00000492506 METTL16Q86W50 562 aaKnown RBP16.14■□□□□ 0.17
HDAC3-213ENST00000492506 TEX11Q8IYF3 940 aa16.14■□□□□ 0.17
HDAC3-213ENST00000492506 SH3RF3Q8TEJ3 882 aaPredicted RBP16.14■□□□□ 0.17
HDAC3-213ENST00000492506 COL25A1Q9BXS0 654 aaPredicted RBP16.14■□□□□ 0.17
HDAC3-213ENST00000492506 PI4KBQ9UBF8 816 aa16.14■□□□□ 0.17
HDAC3-213ENST00000492506 NOB1Q9ULX3 412 aaKnown RBP16.14■□□□□ 0.17
HDAC3-213ENST00000492506 POTEB2H3BUK9 544 aa16.13■□□□□ 0.17
HDAC3-213ENST00000492506 ARID4AP29374 1257 aaPredicted RBP16.13■□□□□ 0.17
HDAC3-213ENST00000492506 MTX1Q13505 466 aa16.13■□□□□ 0.17
HDAC3-213ENST00000492506 MORN1Q5T089 497 aa16.13■□□□□ 0.17
HDAC3-213ENST00000492506 TRMT44Q8IYL2 757 aaKnown RBP16.13■□□□□ 0.17
HDAC3-213ENST00000492506 TRMT2AQ8IZ69 625 aaKnown RBP16.13■□□□□ 0.17
HDAC3-213ENST00000492506 CDCA7LQ96GN5 454 aa16.13■□□□□ 0.17
HDAC3-213ENST00000492506 PORCNQ9H237 461 aa16.13■□□□□ 0.17
HDAC3-213ENST00000492506 HDAC5Q9UQL6 1122 aa16.13■□□□□ 0.17
HDAC3-213ENST00000492506 MYH1P12882 1939 aa16.13■□□□□ 0.17
HDAC3-213ENST00000492506 RLFQ13129 1914 aa16.12■□□□□ 0.17
HDAC3-213ENST00000492506 C19orf81C9J6K1 198 aa16.12■□□□□ 0.17
HDAC3-213ENST00000492506 SRGAP3O43295 1099 aa16.12■□□□□ 0.17
HDAC3-213ENST00000492506 ASNSP08243 561 aa16.12■□□□□ 0.17
HDAC3-213ENST00000492506 ZKSCAN1P17029 563 aaPredicted RBP16.12■□□□□ 0.17
HDAC3-213ENST00000492506 MAPK4P31152 587 aa16.12■□□□□ 0.17
HDAC3-213ENST00000492506 MCAMP43121 646 aa16.12■□□□□ 0.17
HDAC3-213ENST00000492506 ERVK-9P63128 1117 aa16.12■□□□□ 0.17
HDAC3-213ENST00000492506 ERVK-24P63145 666 aa16.12■□□□□ 0.17
HDAC3-213ENST00000492506 MDM2Q00987 491 aaPredicted RBP16.12■□□□□ 0.17
HDAC3-213ENST00000492506 NEUROD6Q96NK8 337 aa16.12■□□□□ 0.17
HDAC3-213ENST00000492506 GUCD1Q96NT3 240 aa16.12■□□□□ 0.17
HDAC3-213ENST00000492506 TMOD4Q9NZQ9 345 aa16.12■□□□□ 0.17
HDAC3-213ENST00000492506 RAI14Q9P0K7 980 aa16.12■□□□□ 0.17
HDAC3-213ENST00000492506 FAM109BQ6ICB4 259 aaPredicted RBP16.11■□□□□ 0.17
HDAC3-213ENST00000492506 GPR142Q7Z601 462 aa16.11■□□□□ 0.17
HDAC3-213ENST00000492506 DHX36Q9H2U1 1008 aaKnown RBP16.11■□□□□ 0.17
HDAC3-213ENST00000492506 EMILIN3Q9NT22 766 aa16.11■□□□□ 0.17
HDAC3-213ENST00000492506 USP17L10C9JJH3 530 aa16.1■□□□□ 0.17
HDAC3-213ENST00000492506 RGS2P41220 211 aa16.1■□□□□ 0.17
HDAC3-213ENST00000492506 ADGRA1Q86SQ6 560 aa16.1■□□□□ 0.17
HDAC3-213ENST00000492506 PKNOX2Q96KN3 472 aa16.1■□□□□ 0.17
HDAC3-213ENST00000492506 API5Q9BZZ5 524 aaKnown RBP16.1■□□□□ 0.17
HDAC3-213ENST00000492506 GDF11O95390 407 aa16.09■□□□□ 0.17
HDAC3-213ENST00000492506 PPP4CP60510 307 aa16.09■□□□□ 0.17
HDAC3-213ENST00000492506 PDE3AQ14432 1141 aa16.09■□□□□ 0.17
HDAC3-213ENST00000492506 NBR1Q14596 966 aa16.09■□□□□ 0.17
HDAC3-213ENST00000492506 PLEKHH3Q7Z736 793 aa16.09■□□□□ 0.17
HDAC3-213ENST00000492506 FOXP4Q8IVH2 680 aaPredicted RBP16.09■□□□□ 0.17
HDAC3-213ENST00000492506 MAPKAPK5Q8IW41 473 aa16.09■□□□□ 0.17
HDAC3-213ENST00000492506 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.09■□□□□ 0.17
HDAC3-213ENST00000492506 APBA2Q99767 749 aa16.09■□□□□ 0.17
HDAC3-213ENST00000492506 GINM1Q9NU53 330 aa16.09■□□□□ 0.17
HDAC3-213ENST00000492506 AATFQ9NY61 560 aaKnown RBP eCLIP16.09■□□□□ 0.17
HDAC3-213ENST00000492506 FLRT1Q9NZU1 646 aa16.09■□□□□ 0.17
HDAC3-213ENST00000492506 ZBTB21Q9ULJ3 1066 aa16.09■□□□□ 0.17
HDAC3-213ENST00000492506 FLT1P17948 1338 aa16.09■□□□□ 0.17
HDAC3-213ENST00000492506 CNMDO75829 334 aa16.08■□□□□ 0.16
HDAC3-213ENST00000492506 MAP2K5Q13163 448 aa16.08■□□□□ 0.16
HDAC3-213ENST00000492506 TGFBRAP1Q8WUH2 860 aa16.08■□□□□ 0.16
HDAC3-213ENST00000492506 PAGR1Q9BTK6 254 aa16.08■□□□□ 0.16
HDAC3-213ENST00000492506 LRP2BPQ9P2M1 347 aa16.08■□□□□ 0.16
HDAC3-213ENST00000492506 PALD1Q9ULE6 856 aa16.08■□□□□ 0.16
HDAC3-213ENST00000492506 GORABQ5T7V8 394 aa16.07■□□□□ 0.16
HDAC3-213ENST00000492506 GTF3C2Q8WUA4 911 aaPredicted RBP16.07■□□□□ 0.16
HDAC3-213ENST00000492506 BAG3O95817 575 aa16.06■□□□□ 0.16
HDAC3-213ENST00000492506 IGHA2P01877 340 aa16.06■□□□□ 0.16
HDAC3-213ENST00000492506 GNAI3P08754 354 aa16.06■□□□□ 0.16
HDAC3-213ENST00000492506 CT47B1P0C2W7 299 aaPredicted RBP16.06■□□□□ 0.16
HDAC3-213ENST00000492506 UQCRFS1P1P0C7P4 283 aa16.06■□□□□ 0.16
HDAC3-213ENST00000492506 NAA16Q6N069 864 aaPredicted RBP16.06■□□□□ 0.16
HDAC3-213ENST00000492506 USP17L2Q6R6M4 530 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms