RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 WDR18Q9BV38 432 aa20.79■□□□□ 0.92
MDC1-206ENST00000489540 R3HDMLQ9H3Y0 253 aa20.79■□□□□ 0.92
MDC1-206ENST00000489540 GDF11O95390 407 aa20.78■□□□□ 0.92
MDC1-206ENST00000489540 APPP05067 770 aa20.78■□□□□ 0.92
MDC1-206ENST00000489540 SHMT1P34896 483 aa20.78■□□□□ 0.92
MDC1-206ENST00000489540 JAG1P78504 1218 aa20.78■□□□□ 0.92
MDC1-206ENST00000489540 MOGSQ13724 837 aa20.78■□□□□ 0.92
MDC1-206ENST00000489540 SBK1Q52WX2 424 aa20.78■□□□□ 0.92
MDC1-206ENST00000489540 CCDC84Q86UT8 332 aaPredicted RBP20.78■□□□□ 0.92
MDC1-206ENST00000489540 TNS4Q8IZW8 715 aa20.78■□□□□ 0.92
MDC1-206ENST00000489540 ZNF296Q8WUU4 475 aaPredicted RBP20.78■□□□□ 0.92
MDC1-206ENST00000489540 NACAP1Q9BZK3 213 aa20.78■□□□□ 0.92
MDC1-206ENST00000489540 CABP5Q9NP86 173 aa20.78■□□□□ 0.92
MDC1-206ENST00000489540 HELLSQ9NRZ9 838 aa20.78■□□□□ 0.92
MDC1-206ENST00000489540 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.78■□□□□ 0.92
MDC1-206ENST00000489540 ARPP21Q9UBL0 812 aaPredicted RBP20.78■□□□□ 0.92
MDC1-206ENST00000489540 ZBTB21Q9ULJ3 1066 aa20.78■□□□□ 0.92
MDC1-206ENST00000489540 GH2P01242 217 aa20.78■□□□□ 0.92
MDC1-206ENST00000489540 ABCB5Q2M3G0 1257 aa20.78■□□□□ 0.92
MDC1-206ENST00000489540 SEC62Q99442 399 aaKnown RBP20.78■□□□□ 0.92
MDC1-206ENST00000489540 FOCADQ5VW36 1801 aa20.77■□□□□ 0.92
MDC1-206ENST00000489540 PDHXO00330 501 aa20.77■□□□□ 0.91
MDC1-206ENST00000489540 FKTNO75072 461 aa20.77■□□□□ 0.91
MDC1-206ENST00000489540 PDE4AP27815 886 aa20.77■□□□□ 0.91
MDC1-206ENST00000489540 CENPBP07199 599 aaPredicted RBP20.76■□□□□ 0.91
MDC1-206ENST00000489540 EVX2Q03828 476 aa20.76■□□□□ 0.91
MDC1-206ENST00000489540 GPAT2Q6NUI2 795 aa20.76■□□□□ 0.91
MDC1-206ENST00000489540 GADL1Q6ZQY3 521 aa20.76■□□□□ 0.91
MDC1-206ENST00000489540 IFNL3Q8IZI9 196 aa20.76■□□□□ 0.91
MDC1-206ENST00000489540 DYNLL2Q96FJ2 89 aa20.76■□□□□ 0.91
MDC1-206ENST00000489540 SLC45A1Q9Y2W3 748 aa20.76■□□□□ 0.91
MDC1-206ENST00000489540 CYP2D7A0A087X1C5 515 aa20.75■□□□□ 0.91
MDC1-206ENST00000489540 C19orf81C9J6K1 198 aa20.75■□□□□ 0.91
MDC1-206ENST00000489540 SDSP20132 328 aa20.75■□□□□ 0.91
MDC1-206ENST00000489540 TDO2P48775 406 aa20.75■□□□□ 0.91
MDC1-206ENST00000489540 BACE1P56817 501 aa20.75■□□□□ 0.91
MDC1-206ENST00000489540 MCMDC2Q4G0Z9 681 aa20.75■□□□□ 0.91
MDC1-206ENST00000489540 SH3D19Q5HYK7 790 aa20.75■□□□□ 0.91
MDC1-206ENST00000489540 C16orf86Q6ZW13 317 aa20.75■□□□□ 0.91
MDC1-206ENST00000489540 PROCA1Q8NCQ7 364 aaPredicted RBP20.75■□□□□ 0.91
MDC1-206ENST00000489540 CDK5RAP2Q96SN8 1893 aa20.75■□□□□ 0.91
MDC1-206ENST00000489540 USP17L10C9JJH3 530 aa20.74■□□□□ 0.91
MDC1-206ENST00000489540 TLR2O60603 784 aa20.74■□□□□ 0.91
MDC1-206ENST00000489540 NEFLP07196 543 aa20.74■□□□□ 0.91
MDC1-206ENST00000489540 CDK8P49336 464 aa20.74■□□□□ 0.91
MDC1-206ENST00000489540 RAB3GAP1Q15042 981 aa20.74■□□□□ 0.91
MDC1-206ENST00000489540 SHROOM1Q2M3G4 852 aaPredicted RBP20.74■□□□□ 0.91
MDC1-206ENST00000489540 CENPQQ7L2Z9 268 aaPredicted RBP20.74■□□□□ 0.91
MDC1-206ENST00000489540 CCDC17Q96LX7 622 aa20.74■□□□□ 0.91
MDC1-206ENST00000489540 MINDY4BA8MYZ0 360 aa20.73■□□□□ 0.91
MDC1-206ENST00000489540 HIP1O00291 1037 aa20.73■□□□□ 0.91
MDC1-206ENST00000489540 HMGCS2P54868 508 aa20.73■□□□□ 0.91
MDC1-206ENST00000489540 SLC44A5Q8NCS7 719 aa20.73■□□□□ 0.91
MDC1-206ENST00000489540 FAM227BQ96M60 508 aa20.73■□□□□ 0.91
MDC1-206ENST00000489540 PARK7Q99497 189 aaKnown RBP20.73■□□□□ 0.91
MDC1-206ENST00000489540 EPB41L4AQ9HCS5 686 aaPredicted RBP20.73■□□□□ 0.91
MDC1-206ENST00000489540 TMOD4Q9NZQ9 345 aa20.73■□□□□ 0.91
MDC1-206ENST00000489540 AGTPBP1Q9UPW5 1226 aa20.73■□□□□ 0.91
MDC1-206ENST00000489540 SIPA1L1O43166 1804 aa20.73■□□□□ 0.91
MDC1-206ENST00000489540 LAMB1P07942 1786 aa20.73■□□□□ 0.91
MDC1-206ENST00000489540 MYH1P12882 1939 aa20.72■□□□□ 0.91
MDC1-206ENST00000489540 MPHOSPH10O00566 681 aaKnown RBP20.72■□□□□ 0.91
MDC1-206ENST00000489540 SP3Q02447 781 aa20.72■□□□□ 0.91
MDC1-206ENST00000489540 MTMR2Q13614 643 aa20.72■□□□□ 0.91
MDC1-206ENST00000489540 CCDC129Q6ZRS4 1044 aa20.72■□□□□ 0.91
MDC1-206ENST00000489540 TMEM179Q6ZVK1 233 aa20.72■□□□□ 0.91
MDC1-206ENST00000489540 NAPBQ9H115 298 aa20.72■□□□□ 0.91
MDC1-206ENST00000489540 ZNF287Q9HBT7 754 aa20.72■□□□□ 0.91
MDC1-206ENST00000489540 MYH7P12883 1935 aa20.72■□□□□ 0.91
MDC1-206ENST00000489540 DOCK1Q14185 1865 aa20.72■□□□□ 0.91
MDC1-206ENST00000489540 NMIQ13287 307 aaPredicted RBP20.71■□□□□ 0.91
MDC1-206ENST00000489540 PABPC4Q13310 644 aaKnown RBP eCLIP20.71■□□□□ 0.913e-9■■■□□ 15.8
MDC1-206ENST00000489540 TTC22Q5TAA0 569 aa20.71■□□□□ 0.91
MDC1-206ENST00000489540 CTU1Q7Z7A3 348 aaKnown RBP20.71■□□□□ 0.91
MDC1-206ENST00000489540 ERO1AQ96HE7 468 aa20.71■□□□□ 0.91
MDC1-206ENST00000489540 A0A0D9SFI3 127 aa20.7■□□□□ 0.9
MDC1-206ENST00000489540 SMIM22K7EJ46 135 aa20.7■□□□□ 0.9
MDC1-206ENST00000489540 MFAP1P55081 439 aaKnown RBP20.7■□□□□ 0.9
MDC1-206ENST00000489540 DGKZQ13574 1117 aa20.7■□□□□ 0.9
MDC1-206ENST00000489540 SEPT2Q15019 361 aa20.7■□□□□ 0.9
MDC1-206ENST00000489540 USP17L2Q6R6M4 530 aa20.7■□□□□ 0.9
MDC1-206ENST00000489540 MKNK2Q9HBH9 465 aa20.7■□□□□ 0.9
MDC1-206ENST00000489540 DIAPH3Q9NSV4 1193 aa20.7■□□□□ 0.9
MDC1-206ENST00000489540 PNMA3Q9UL41 463 aa20.7■□□□□ 0.9
MDC1-206ENST00000489540 SLC3A2P08195 630 aaKnown RBP20.7■□□□□ 0.9
MDC1-206ENST00000489540 GUCY1A2P33402 732 aa20.7■□□□□ 0.9
MDC1-206ENST00000489540 USP14P54578 494 aa20.7■□□□□ 0.9
MDC1-206ENST00000489540 ARHGEF6Q15052 776 aa20.7■□□□□ 0.9
MDC1-206ENST00000489540 PKN2Q16513 984 aaKnown RBP20.7■□□□□ 0.9
MDC1-206ENST00000489540 TREML2Q5T2D2 321 aa20.7■□□□□ 0.9
MDC1-206ENST00000489540 C17orf99Q6UX52 265 aa20.7■□□□□ 0.9
MDC1-206ENST00000489540 DDX60LQ5H9U9 1706 aaKnown RBP20.69■□□□□ 0.9
MDC1-206ENST00000489540 CYP2C8P10632 490 aa20.69■□□□□ 0.9
MDC1-206ENST00000489540 AKR1B1P15121 316 aa20.69■□□□□ 0.9
MDC1-206ENST00000489540 OSBPP22059 807 aa20.69■□□□□ 0.9
MDC1-206ENST00000489540 ALX1Q15699 326 aa20.69■□□□□ 0.9
MDC1-206ENST00000489540 FEZ1Q99689 392 aa20.69■□□□□ 0.9
MDC1-206ENST00000489540 KIAA1683Q9H0B3 1180 aa20.69■□□□□ 0.9
MDC1-206ENST00000489540 ROBO3Q96MS0 1386 aa20.68■□□□□ 0.9
MDC1-206ENST00000489540 NAV1Q8NEY1 1877 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms