RNA–Protein interactions for RNA: ENST00000489111.1

USP11-211, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 516 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-211ENST00000489111 ADAMTSL1Q8N6G6 1762 aa11.72□□□□□ -0.53
USP11-211ENST00000489111 ATRNL1Q5VV63 1379 aa11.72□□□□□ -0.53
USP11-211ENST00000489111 PTPDC1A2A3K4 754 aa11.72□□□□□ -0.53
USP11-211ENST00000489111 H7C1D1 291 aa11.72□□□□□ -0.53
USP11-211ENST00000489111 CDKL5O76039 1030 aa11.72□□□□□ -0.53
USP11-211ENST00000489111 PDCP20941 246 aa11.72□□□□□ -0.53
USP11-211ENST00000489111 RCAN1P53805 252 aa11.72□□□□□ -0.53
USP11-211ENST00000489111 HMGN5P82970 282 aaKnown RBP11.72□□□□□ -0.53
USP11-211ENST00000489111 SEC23AQ15436 765 aa11.72□□□□□ -0.53
USP11-211ENST00000489111 FKBP1CQ5VVH2 108 aa11.72□□□□□ -0.53
USP11-211ENST00000489111 CATIPQ7Z7H3 387 aa11.72□□□□□ -0.53
USP11-211ENST00000489111 RAB11FIP4Q86YS3 637 aa11.72□□□□□ -0.53
USP11-211ENST00000489111 ZNF654Q8IZM8 581 aa11.72□□□□□ -0.53
USP11-211ENST00000489111 GPC2Q8N158 579 aa11.72□□□□□ -0.53
USP11-211ENST00000489111 ZBED3Q96IU2 234 aaPredicted RBP11.72□□□□□ -0.53
USP11-211ENST00000489111 SENP2Q9HC62 589 aa11.72□□□□□ -0.53
USP11-211ENST00000489111 PI4KBQ9UBF8 816 aa11.72□□□□□ -0.53
USP11-211ENST00000489111 CNOT7Q9UIV1 285 aaKnown RBP11.72□□□□□ -0.53
USP11-211ENST00000489111 SHTN1A0MZ66 631 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 WNT10BO00744 389 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 DDAH1O94760 285 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 CALM1P0DP23 149 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 CALM2P0DP24 149 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 CALM3P0DP25 149 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 TNNI2P48788 182 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 GABPAQ06546 454 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 TNFAIP1Q13829 316 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 RAB3GAP1Q15042 981 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 KIF4BQ2VIQ3 1234 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 RBM26Q5T8P6 1007 aaKnown RBP11.71□□□□□ -0.53
USP11-211ENST00000489111 C9orf131Q5VYM1 1079 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 ZFPM1Q8IX07 1006 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 FAM184AQ8NB25 1140 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 CSRNP1Q96S65 589 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 MYL10Q9BUA6 226 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 KAT14Q9H8E8 782 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 TCP11L1Q9NUJ3 509 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 HPS5Q9UPZ3 1129 aa11.71□□□□□ -0.53
USP11-211ENST00000489111 NID2Q14112 1375 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 PSME4Q14997 1843 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 WDR33Q9C0J8 1336 aaKnown RBP11.7□□□□□ -0.54
USP11-211ENST00000489111 CCDC196A0A1B0GTZ2 297 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 DDTLA6NHG4 134 aaPredicted RBP11.7□□□□□ -0.54
USP11-211ENST00000489111 GRIN3BO60391 1043 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 NMT2O60551 498 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 JAK2O60674 1132 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 PDIA4P13667 645 aaKnown RBP11.7□□□□□ -0.54
USP11-211ENST00000489111 RXRAP19793 462 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 LMOD1P29536 600 aaPredicted RBP11.7□□□□□ -0.54
USP11-211ENST00000489111 RTN1Q16799 776 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 NBPF9Q3BBW0 867 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 TBC1D10BQ4KMP7 808 aaPredicted RBP11.7□□□□□ -0.54
USP11-211ENST00000489111 PPP4R3BQ5MIZ7 849 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 FAM83AQ86UY5 434 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 DGKHQ86XP1 1220 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 CCDC144CPQ8IYA2 1237 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 NSUN7Q8NE18 718 aaKnown RBP11.7□□□□□ -0.54
USP11-211ENST00000489111 NEDD1Q8NHV4 660 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 NUP133Q8WUM0 1156 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 FAM151AQ8WW52 585 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 DDX11Q96FC9 970 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 CCDC17Q96LX7 622 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 STX8Q9UNK0 236 aa11.7□□□□□ -0.54
USP11-211ENST00000489111 PLIN4Q96Q06 1357 aa11.69□□□□□ -0.54
USP11-211ENST00000489111 VPS37CA5D8V6 355 aaPredicted RBP11.69□□□□□ -0.54
USP11-211ENST00000489111 MPHOSPH10O00566 681 aaKnown RBP11.69□□□□□ -0.54
USP11-211ENST00000489111 SOCS7O14512 581 aa11.69□□□□□ -0.54
USP11-211ENST00000489111 SHMT1P34896 483 aa11.69□□□□□ -0.54
USP11-211ENST00000489111 LARP1BQ659C4 914 aaKnown RBP11.69□□□□□ -0.54
USP11-211ENST00000489111 SH3BP5LQ7L8J4 393 aa11.69□□□□□ -0.54
USP11-211ENST00000489111 SAMD7Q7Z3H4 446 aa11.69□□□□□ -0.54
USP11-211ENST00000489111 FOXP4Q8IVH2 680 aaPredicted RBP11.69□□□□□ -0.54
USP11-211ENST00000489111 SMARCC2Q8TAQ2 1214 aa11.69□□□□□ -0.54
USP11-211ENST00000489111 GPRC5DQ9NZD1 345 aa11.69□□□□□ -0.54
USP11-211ENST00000489111 HERC5Q9UII4 1024 aaKnown RBP11.69□□□□□ -0.54
USP11-211ENST00000489111 CNTNAP1P78357 1384 aa11.68□□□□□ -0.54
USP11-211ENST00000489111 STX6O43752 255 aa11.68□□□□□ -0.54
USP11-211ENST00000489111 CTDNEP1O95476 244 aa11.68□□□□□ -0.54
USP11-211ENST00000489111 AKR1B1P15121 316 aa11.68□□□□□ -0.54
USP11-211ENST00000489111 SYT1P21579 422 aa11.68□□□□□ -0.54
USP11-211ENST00000489111 KIF5BP33176 963 aa11.68□□□□□ -0.54
USP11-211ENST00000489111 PPP2R5BQ15173 497 aa11.68□□□□□ -0.54
USP11-211ENST00000489111 PNMA1Q8ND90 353 aa11.68□□□□□ -0.54
USP11-211ENST00000489111 CTCFLQ8NI51 663 aaPredicted RBP11.68□□□□□ -0.54
USP11-211ENST00000489111 ANKS1AQ92625 1134 aa11.68□□□□□ -0.54
USP11-211ENST00000489111 GBP4Q96PP9 640 aa11.68□□□□□ -0.54
USP11-211ENST00000489111 TMEM39BQ9GZU3 492 aa11.68□□□□□ -0.54
USP11-211ENST00000489111 IL17RBQ9NRM6 502 aa11.68□□□□□ -0.54
USP11-211ENST00000489111 RBM28Q9NW13 759 aaKnown RBP11.68□□□□□ -0.54
USP11-211ENST00000489111 BAZ2AQ9UIF9 1905 aaKnown RBP11.68□□□□□ -0.54
USP11-211ENST00000489111 FAM196BA6NMK8 535 aa11.67□□□□□ -0.54
USP11-211ENST00000489111 H3BQV1 296 aa11.67□□□□□ -0.54
USP11-211ENST00000489111 DTNBO60941 627 aa11.67□□□□□ -0.54
USP11-211ENST00000489111 BRD1O95696 1058 aa11.67□□□□□ -0.54
USP11-211ENST00000489111 EGFRP00533 1210 aa11.67□□□□□ -0.54
USP11-211ENST00000489111 TOP1P11387 765 aaKnown RBP11.67□□□□□ -0.54
USP11-211ENST00000489111 PKP1Q13835 747 aa11.67□□□□□ -0.54
USP11-211ENST00000489111 CERKLQ49MI3 558 aaPredicted RBP11.67□□□□□ -0.54
USP11-211ENST00000489111 IFFO2Q5TF58 517 aa11.67□□□□□ -0.54
USP11-211ENST00000489111 FOXD4L5Q5VV16 416 aaPredicted RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms