RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 NBPF12Q5TAG4 269 aaPredicted RBP12.28□□□□□ -0.44
SKA1-204ENST00000488454 ZNF589Q86UQ0 364 aaPredicted RBP12.28□□□□□ -0.44
SKA1-204ENST00000488454 FOXP4Q8IVH2 680 aaPredicted RBP12.28□□□□□ -0.44
SKA1-204ENST00000488454 CDCA5Q96FF9 252 aa12.28□□□□□ -0.44
SKA1-204ENST00000488454 CSRNP1Q96S65 589 aa12.28□□□□□ -0.44
SKA1-204ENST00000488454 ZNF408Q9H9D4 720 aa12.28□□□□□ -0.44
SKA1-204ENST00000488454 PI4KBQ9UBF8 816 aa12.28□□□□□ -0.44
SKA1-204ENST00000488454 CTNNA3Q9UI47 895 aa12.28□□□□□ -0.44
SKA1-204ENST00000488454 PALD1Q9ULE6 856 aa12.28□□□□□ -0.44
SKA1-204ENST00000488454 CNTNAP1P78357 1384 aa12.28□□□□□ -0.44
SKA1-204ENST00000488454 DDTLA6NHG4 134 aaPredicted RBP12.27□□□□□ -0.45
SKA1-204ENST00000488454 MINDY4BA8MYZ0 360 aa12.27□□□□□ -0.45
SKA1-204ENST00000488454 USP17L12C9JPN9 530 aa12.27□□□□□ -0.45
SKA1-204ENST00000488454 USP17L21D6R901 530 aa12.27□□□□□ -0.45
SKA1-204ENST00000488454 EVI5O60447 810 aa12.27□□□□□ -0.45
SKA1-204ENST00000488454 ITGBL1O95965 494 aaPredicted RBP12.27□□□□□ -0.45
SKA1-204ENST00000488454 ALX1Q15699 326 aa12.27□□□□□ -0.45
SKA1-204ENST00000488454 DCAF15Q66K64 600 aa12.27□□□□□ -0.45
SKA1-204ENST00000488454 CRACR2BQ8N4Y2 399 aaPredicted RBP12.27□□□□□ -0.45
SKA1-204ENST00000488454 C2orf69Q8N8R5 385 aa12.27□□□□□ -0.45
SKA1-204ENST00000488454 DSCC1Q9BVC3 393 aa12.27□□□□□ -0.45
SKA1-204ENST00000488454 ARPP21Q9UBL0 812 aaPredicted RBP12.27□□□□□ -0.45
SKA1-204ENST00000488454 MYO5AQ9Y4I1 1855 aaKnown RBP12.27□□□□□ -0.45
SKA1-204ENST00000488454 DPYSL4O14531 572 aa12.26□□□□□ -0.45
SKA1-204ENST00000488454 REC8O95072 547 aa12.26□□□□□ -0.45
SKA1-204ENST00000488454 CELF2O95319 508 aaKnown RBP12.26□□□□□ -0.45
SKA1-204ENST00000488454 FGAP02671 866 aa12.26□□□□□ -0.45
SKA1-204ENST00000488454 SLC3A2P08195 630 aaKnown RBP12.26□□□□□ -0.45
SKA1-204ENST00000488454 SLC4A8Q2Y0W8 1093 aa12.26□□□□□ -0.45
SKA1-204ENST00000488454 SBK1Q52WX2 424 aa12.26□□□□□ -0.45
SKA1-204ENST00000488454 VPS53Q5VIR6 699 aa12.26□□□□□ -0.45
SKA1-204ENST00000488454 CTR9Q6PD62 1173 aa12.26□□□□□ -0.45
SKA1-204ENST00000488454 DLK2Q6UY11 383 aa12.26□□□□□ -0.45
SKA1-204ENST00000488454 ARMC9Q7Z3E5 817 aa12.26□□□□□ -0.45
SKA1-204ENST00000488454 ZNF687Q8N1G0 1237 aa12.26□□□□□ -0.45
SKA1-204ENST00000488454 TEPSINQ96N21 525 aa12.26□□□□□ -0.45
SKA1-204ENST00000488454 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.26□□□□□ -0.45
SKA1-204ENST00000488454 ANO2Q9NQ90 1003 aa12.26□□□□□ -0.45
SKA1-204ENST00000488454 MKRN1Q9UHC7 482 aaKnown RBP12.26□□□□□ -0.45
SKA1-204ENST00000488454 ZNF213O14771 459 aa12.25□□□□□ -0.45
SKA1-204ENST00000488454 PRKG1Q13976 671 aa12.25□□□□□ -0.45
SKA1-204ENST00000488454 C12orf60Q5U649 245 aa12.25□□□□□ -0.45
SKA1-204ENST00000488454 MIGA2Q7L4E1 593 aa12.25□□□□□ -0.45
SKA1-204ENST00000488454 SH3BP5LQ7L8J4 393 aa12.25□□□□□ -0.45
SKA1-204ENST00000488454 ZNF341Q9BYN7 854 aa12.25□□□□□ -0.45
SKA1-204ENST00000488454 ZNF287Q9HBT7 754 aa12.25□□□□□ -0.45
SKA1-204ENST00000488454 HERC5Q9UII4 1024 aaKnown RBP12.25□□□□□ -0.45
SKA1-204ENST00000488454 SERPINB13Q9UIV8 391 aa12.25□□□□□ -0.45
SKA1-204ENST00000488454 ATRNL1Q5VV63 1379 aa12.25□□□□□ -0.45
SKA1-204ENST00000488454 ADAMTSL1Q8N6G6 1762 aa12.25□□□□□ -0.45
SKA1-204ENST00000488454 IREB2P48200 963 aaKnown RBP12.24□□□□□ -0.45
SKA1-204ENST00000488454 PLCD1P51178 756 aa12.24□□□□□ -0.45
SKA1-204ENST00000488454 FKBP1BP68106 108 aa12.24□□□□□ -0.45
SKA1-204ENST00000488454 PTH1RQ03431 593 aa12.24□□□□□ -0.45
SKA1-204ENST00000488454 FMR1Q06787 632 aaKnown RBP eCLIP12.24□□□□□ -0.45
SKA1-204ENST00000488454 IMMTQ16891 758 aaKnown RBP12.24□□□□□ -0.45
SKA1-204ENST00000488454 KRTAP3-3Q9BYR6 98 aa12.24□□□□□ -0.45
SKA1-204ENST00000488454 KRTAP3-2Q9BYR7 98 aa12.24□□□□□ -0.45
SKA1-204ENST00000488454 IL25Q9H293 177 aa12.24□□□□□ -0.45
SKA1-204ENST00000488454 MKNK2Q9HBH9 465 aa12.24□□□□□ -0.45
SKA1-204ENST00000488454 GBA2Q9HCG7 927 aaPredicted RBP12.24□□□□□ -0.45
SKA1-204ENST00000488454 EPB41L4AQ9HCS5 686 aaPredicted RBP12.24□□□□□ -0.45
SKA1-204ENST00000488454 MYH7P12883 1935 aa12.23□□□□□ -0.45
SKA1-204ENST00000488454 COL2A1P02458 1487 aaPredicted RBP12.23□□□□□ -0.45
SKA1-204ENST00000488454 PASKQ96RG2 1323 aa12.23□□□□□ -0.45
SKA1-204ENST00000488454 CYP2D6P10635 497 aa12.23□□□□□ -0.45
SKA1-204ENST00000488454 PDE4BQ07343 736 aa12.23□□□□□ -0.45
SKA1-204ENST00000488454 PPARAQ07869 468 aa12.23□□□□□ -0.45
SKA1-204ENST00000488454 MAP4K1Q92918 833 aa12.23□□□□□ -0.45
SKA1-204ENST00000488454 EHD4Q9H223 541 aa12.23□□□□□ -0.45
SKA1-204ENST00000488454 SWAP70Q9UH65 585 aa12.23□□□□□ -0.45
SKA1-204ENST00000488454 ANGEL1Q9UNK9 670 aaKnown RBP12.23□□□□□ -0.45
SKA1-204ENST00000488454 ZMYM6O95789 1325 aa12.22□□□□□ -0.45
SKA1-204ENST00000488454 AK9Q5TCS8 1911 aa12.22□□□□□ -0.45
SKA1-204ENST00000488454 CYP2D7A0A087X1C5 515 aa12.22□□□□□ -0.45
SKA1-204ENST00000488454 TMEM88BA6NKF7 163 aa12.22□□□□□ -0.45
SKA1-204ENST00000488454 FOXP2O15409 715 aa12.22□□□□□ -0.45
SKA1-204ENST00000488454 USP2O75604 605 aaPredicted RBP12.22□□□□□ -0.45
SKA1-204ENST00000488454 MAP3K10Q02779 954 aa12.22□□□□□ -0.45
SKA1-204ENST00000488454 RNF20Q5VTR2 975 aa12.22□□□□□ -0.45
SKA1-204ENST00000488454 CST9Q5W186 159 aa12.22□□□□□ -0.45
SKA1-204ENST00000488454 ZNF444Q8N0Y2 327 aaPredicted RBP12.22□□□□□ -0.45
SKA1-204ENST00000488454 STK11IPQ8N1F8 1099 aa12.22□□□□□ -0.45
SKA1-204ENST00000488454 LSG1Q9H089 658 aaKnown RBP12.22□□□□□ -0.45
SKA1-204ENST00000488454 ABT1Q9ULW3 272 aaKnown RBP12.22□□□□□ -0.45
SKA1-204ENST00000488454 UBE2Q2LH0YL09 131 aa12.21□□□□□ -0.45
SKA1-204ENST00000488454 MCCP23508 829 aa12.21□□□□□ -0.45
SKA1-204ENST00000488454 CDK8P49336 464 aa12.21□□□□□ -0.45
SKA1-204ENST00000488454 APLP1P51693 650 aa12.21□□□□□ -0.45
SKA1-204ENST00000488454 HAND2P61296 217 aa12.21□□□□□ -0.45
SKA1-204ENST00000488454 CERKLQ49MI3 558 aaPredicted RBP12.21□□□□□ -0.45
SKA1-204ENST00000488454 METTL16Q86W50 562 aaKnown RBP12.21□□□□□ -0.45
SKA1-204ENST00000488454 ANKRD13AQ8IZ07 590 aa12.21□□□□□ -0.45
SKA1-204ENST00000488454 KLRG1Q96E93 195 aa12.21□□□□□ -0.45
SKA1-204ENST00000488454 DYNLL2Q96FJ2 89 aa12.21□□□□□ -0.45
SKA1-204ENST00000488454 WRNIP1Q96S55 665 aa12.21□□□□□ -0.45
SKA1-204ENST00000488454 RNF41Q9H4P4 317 aaPredicted RBP12.21□□□□□ -0.45
SKA1-204ENST00000488454 TOMM22Q9NS69 142 aa12.21□□□□□ -0.45
SKA1-204ENST00000488454 ANAPC4Q9UJX5 808 aa12.21□□□□□ -0.45
SKA1-204ENST00000488454 RBM8AQ9Y5S9 174 aaKnown RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms