RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 AKAP2Q9Y2D5 859 aa18.98■□□□□ 0.63
MCF2L-228ENST00000487354 VCANP13611 3396 aa18.98■□□□□ 0.63
MCF2L-228ENST00000487354 GSTO1P78417 241 aa18.97■□□□□ 0.63
MCF2L-228ENST00000487354 CACNB2Q08289 660 aaPredicted RBP18.97■□□□□ 0.63
MCF2L-228ENST00000487354 CCL14Q16627 93 aa18.97■□□□□ 0.63
MCF2L-228ENST00000487354 Q3C1V9 767 aa18.97■□□□□ 0.63
MCF2L-228ENST00000487354 ADGRA1Q86SQ6 560 aa18.97■□□□□ 0.63
MCF2L-228ENST00000487354 PORCNQ9H237 461 aa18.97■□□□□ 0.63
MCF2L-228ENST00000487354 AS3MTQ9HBK9 375 aa18.97■□□□□ 0.63
MCF2L-228ENST00000487354 RLFQ13129 1914 aa18.96■□□□□ 0.63
MCF2L-228ENST00000487354 LDHCP07864 332 aa18.96■□□□□ 0.63
MCF2L-228ENST00000487354 CCND3P30281 292 aaPredicted RBP18.96■□□□□ 0.63
MCF2L-228ENST00000487354 LRRC26Q2I0M4 334 aa18.96■□□□□ 0.63
MCF2L-228ENST00000487354 MORN1Q5T089 497 aa18.96■□□□□ 0.63
MCF2L-228ENST00000487354 SOCS4Q8WXH5 440 aa18.96■□□□□ 0.63
MCF2L-228ENST00000487354 API5Q9BZZ5 524 aaKnown RBP18.96■□□□□ 0.63
MCF2L-228ENST00000487354 RAI14Q9P0K7 980 aa18.96■□□□□ 0.63
MCF2L-228ENST00000487354 FLT1P17948 1338 aa18.96■□□□□ 0.63
MCF2L-228ENST00000487354 IRX3P78415 501 aaPredicted RBP18.95■□□□□ 0.62
MCF2L-228ENST00000487354 GPRC5AQ8NFJ5 357 aa18.95■□□□□ 0.62
MCF2L-228ENST00000487354 NEUROD6Q96NK8 337 aa18.95■□□□□ 0.62
MCF2L-228ENST00000487354 NUDT12Q9BQG2 462 aa18.95■□□□□ 0.62
MCF2L-228ENST00000487354 UBE2OQ9C0C9 1292 aaKnown RBP18.95■□□□□ 0.62
MCF2L-228ENST00000487354 PI4KBQ9UBF8 816 aa18.95■□□□□ 0.62
MCF2L-228ENST00000487354 SPTBN5Q9NRC6 3674 aaKnown RBP18.95■□□□□ 0.62
MCF2L-228ENST00000487354 CDH23Q9H251 3354 aa18.95■□□□□ 0.62
MCF2L-228ENST00000487354 ASNSP08243 561 aa18.94■□□□□ 0.62
MCF2L-228ENST00000487354 ERVK-9P63128 1117 aa18.94■□□□□ 0.62
MCF2L-228ENST00000487354 ERVK-24P63145 666 aa18.94■□□□□ 0.62
MCF2L-228ENST00000487354 GPR142Q7Z601 462 aa18.94■□□□□ 0.62
MCF2L-228ENST00000487354 AATFQ9NY61 560 aaKnown RBP eCLIP18.94■□□□□ 0.62
MCF2L-228ENST00000487354 HDAC5Q9UQL6 1122 aa18.94■□□□□ 0.62
MCF2L-228ENST00000487354 CNMDO75829 334 aa18.93■□□□□ 0.62
MCF2L-228ENST00000487354 GDF11O95390 407 aa18.93■□□□□ 0.62
MCF2L-228ENST00000487354 ZKSCAN1P17029 563 aaPredicted RBP18.93■□□□□ 0.62
MCF2L-228ENST00000487354 DHX36Q9H2U1 1008 aaKnown RBP18.93■□□□□ 0.62
MCF2L-228ENST00000487354 EMILIN3Q9NT22 766 aa18.93■□□□□ 0.62
MCF2L-228ENST00000487354 ZBTB21Q9ULJ3 1066 aa18.93■□□□□ 0.62
MCF2L-228ENST00000487354 ZNF236Q9UL36 1845 aa18.93■□□□□ 0.62
MCF2L-228ENST00000487354 A0A0G2JMZ2 1700 aa18.92■□□□□ 0.62
MCF2L-228ENST00000487354 PNMA6EA0A0J9YXQ4 647 aa18.92■□□□□ 0.62
MCF2L-228ENST00000487354 CT47B1P0C2W7 299 aaPredicted RBP18.92■□□□□ 0.62
MCF2L-228ENST00000487354 MAPK4P31152 587 aa18.92■□□□□ 0.62
MCF2L-228ENST00000487354 PPP4CP60510 307 aa18.92■□□□□ 0.62
MCF2L-228ENST00000487354 MAPKAPK5Q8IW41 473 aa18.92■□□□□ 0.62
MCF2L-228ENST00000487354 TGFBRAP1Q8WUH2 860 aa18.92■□□□□ 0.62
MCF2L-228ENST00000487354 GUCD1Q96NT3 240 aa18.92■□□□□ 0.62
MCF2L-228ENST00000487354 APBA2Q99767 749 aa18.92■□□□□ 0.62
MCF2L-228ENST00000487354 TMOD4Q9NZQ9 345 aa18.92■□□□□ 0.62
MCF2L-228ENST00000487354 FLRT1Q9NZU1 646 aa18.92■□□□□ 0.62
MCF2L-228ENST00000487354 PRUNE2Q8WUY3 3088 aa18.91■□□□□ 0.62
MCF2L-228ENST00000487354 ZNF316A6NFI3 1004 aaPredicted RBP18.91■□□□□ 0.62
MCF2L-228ENST00000487354 C19orf81C9J6K1 198 aa18.91■□□□□ 0.62
MCF2L-228ENST00000487354 USP17L10C9JJH3 530 aa18.91■□□□□ 0.62
MCF2L-228ENST00000487354 RARSP54136 660 aaKnown RBP18.91■□□□□ 0.62
MCF2L-228ENST00000487354 MDM2Q00987 491 aaPredicted RBP18.91■□□□□ 0.62
MCF2L-228ENST00000487354 TRMT44Q8IYL2 757 aaKnown RBP18.91■□□□□ 0.62
MCF2L-228ENST00000487354 PALD1Q9ULE6 856 aa18.91■□□□□ 0.62
MCF2L-228ENST00000487354 TNNQ9UQP3 1299 aa18.91■□□□□ 0.62
MCF2L-228ENST00000487354 POTEB2H3BUK9 544 aa18.9■□□□□ 0.62
MCF2L-228ENST00000487354 IGHA2P01877 340 aa18.9■□□□□ 0.62
MCF2L-228ENST00000487354 GNAI3P08754 354 aa18.9■□□□□ 0.62
MCF2L-228ENST00000487354 RGS2P41220 211 aa18.9■□□□□ 0.62
MCF2L-228ENST00000487354 PLEKHH3Q7Z736 793 aa18.9■□□□□ 0.62
MCF2L-228ENST00000487354 PAGR1Q9BTK6 254 aa18.9■□□□□ 0.62
MCF2L-228ENST00000487354 COL25A1Q9BXS0 654 aaPredicted RBP18.9■□□□□ 0.62
MCF2L-228ENST00000487354 SNRKQ9NRH2 765 aa18.9■□□□□ 0.62
MCF2L-228ENST00000487354 LRP2BPQ9P2M1 347 aa18.9■□□□□ 0.62
MCF2L-228ENST00000487354 CYP2E1P05181 493 aaPredicted RBP18.89■□□□□ 0.61
MCF2L-228ENST00000487354 UQCRFS1P1P0C7P4 283 aa18.89■□□□□ 0.61
MCF2L-228ENST00000487354 PDE3AQ14432 1141 aa18.89■□□□□ 0.61
MCF2L-228ENST00000487354 NAA16Q6N069 864 aaPredicted RBP18.89■□□□□ 0.61
MCF2L-228ENST00000487354 ARHGAP45Q92619 1136 aa18.89■□□□□ 0.61
MCF2L-228ENST00000487354 C12orf42Q96LP6 360 aa18.89■□□□□ 0.61
MCF2L-228ENST00000487354 GINM1Q9NU53 330 aa18.89■□□□□ 0.61
MCF2L-228ENST00000487354 PARP14Q460N5 1801 aa18.88■□□□□ 0.61
MCF2L-228ENST00000487354 NAV1Q8NEY1 1877 aa18.88■□□□□ 0.61
MCF2L-228ENST00000487354 GORABQ5T7V8 394 aa18.88■□□□□ 0.61
MCF2L-228ENST00000487354 FOXP4Q8IVH2 680 aaPredicted RBP18.88■□□□□ 0.61
MCF2L-228ENST00000487354 PLCG2P16885 1265 aa18.87■□□□□ 0.61
MCF2L-228ENST00000487354 DYNLL1P63167 89 aaKnown RBP18.87■□□□□ 0.61
MCF2L-228ENST00000487354 MAP2K5Q13163 448 aa18.87■□□□□ 0.61
MCF2L-228ENST00000487354 FAM109BQ6ICB4 259 aaPredicted RBP18.87■□□□□ 0.61
MCF2L-228ENST00000487354 GTF3C2Q8WUA4 911 aaPredicted RBP18.87■□□□□ 0.61
MCF2L-228ENST00000487354 DBNDD2Q9BQY9 259 aa18.87■□□□□ 0.61
MCF2L-228ENST00000487354 PIH1D3Q9NQM4 214 aaKnown RBP18.87■□□□□ 0.61
MCF2L-228ENST00000487354 SAP30BPQ9UHR5 308 aaKnown RBP18.87■□□□□ 0.61
MCF2L-228ENST00000487354 BAG3O95817 575 aa18.86■□□□□ 0.61
MCF2L-228ENST00000487354 GH2P01242 217 aa18.86■□□□□ 0.61
MCF2L-228ENST00000487354 TRIM27P14373 513 aa18.86■□□□□ 0.61
MCF2L-228ENST00000487354 USP17L2Q6R6M4 530 aa18.86■□□□□ 0.61
MCF2L-228ENST00000487354 CRACR2BQ8N4Y2 399 aaPredicted RBP18.86■□□□□ 0.61
MCF2L-228ENST00000487354 TRPV1Q8NER1 839 aa18.86■□□□□ 0.61
MCF2L-228ENST00000487354 NDUFB9Q9Y6M9 179 aa18.86■□□□□ 0.61
MCF2L-228ENST00000487354 TNNI3KQ59H18 835 aa18.85■□□□□ 0.61
MCF2L-228ENST00000487354 TATDN1Q6P1N9 297 aa18.85■□□□□ 0.61
MCF2L-228ENST00000487354 NPLOC4Q8TAT6 608 aa18.85■□□□□ 0.61
MCF2L-228ENST00000487354 NOL10Q9BSC4 688 aaKnown RBP18.85■□□□□ 0.61
MCF2L-228ENST00000487354 GPR108Q9NPR9 543 aa18.85■□□□□ 0.61
MCF2L-228ENST00000487354 BTBD7Q9P203 1132 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms