RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ENTPD3O75355 529 aa16.64■□□□□ 0.25
CUX1-209ENST00000487284 POLR3DP05423 398 aaPredicted RBP16.64■□□□□ 0.25
CUX1-209ENST00000487284 PLCD1P51178 756 aa16.64■□□□□ 0.25
CUX1-209ENST00000487284 FKBP1CQ5VVH2 108 aa16.64■□□□□ 0.25
CUX1-209ENST00000487284 SGMS1Q86VZ5 419 aa16.64■□□□□ 0.25
CUX1-209ENST00000487284 NSUN7Q8NE18 718 aaKnown RBP16.64■□□□□ 0.25
CUX1-209ENST00000487284 SCAF8Q9UPN6 1271 aaKnown RBP16.64■□□□□ 0.25
CUX1-209ENST00000487284 HPS5Q9UPZ3 1129 aa16.64■□□□□ 0.25
CUX1-209ENST00000487284 MTMR6Q9Y217 621 aa16.64■□□□□ 0.25
CUX1-209ENST00000487284 POLR2AP24928 1970 aaKnown RBP16.63■□□□□ 0.25
CUX1-209ENST00000487284 JAK2O60674 1132 aa16.63■□□□□ 0.25
CUX1-209ENST00000487284 CTDNEP1O95476 244 aa16.63■□□□□ 0.25
CUX1-209ENST00000487284 LIFRP42702 1097 aa16.63■□□□□ 0.25
CUX1-209ENST00000487284 FOXD4L5Q5VV16 416 aaPredicted RBP16.63■□□□□ 0.25
CUX1-209ENST00000487284 AMOTL1Q8IY63 956 aa16.63■□□□□ 0.25
CUX1-209ENST00000487284 FOXD4L4Q8WXT5 416 aaPredicted RBP16.63■□□□□ 0.25
CUX1-209ENST00000487284 LY9Q9HBG7 655 aa16.63■□□□□ 0.25
CUX1-209ENST00000487284 ROBO3Q96MS0 1386 aa16.63■□□□□ 0.25
CUX1-209ENST00000487284 DDTLA6NHG4 134 aaPredicted RBP16.62■□□□□ 0.25
CUX1-209ENST00000487284 GOLGA8BA8MQT2 603 aa16.62■□□□□ 0.25
CUX1-209ENST00000487284 DTNBO60941 627 aa16.62■□□□□ 0.25
CUX1-209ENST00000487284 F13A1P00488 732 aa16.62■□□□□ 0.25
CUX1-209ENST00000487284 EPHX2P34913 555 aa16.62■□□□□ 0.25
CUX1-209ENST00000487284 HMGN5P82970 282 aaKnown RBP16.62■□□□□ 0.25
CUX1-209ENST00000487284 ANGEL2Q5VTE6 544 aaKnown RBP16.62■□□□□ 0.25
CUX1-209ENST00000487284 LARP1BQ659C4 914 aaKnown RBP16.62■□□□□ 0.25
CUX1-209ENST00000487284 SH3BP5LQ7L8J4 393 aa16.62■□□□□ 0.25
CUX1-209ENST00000487284 GGA3Q9NZ52 723 aa16.62■□□□□ 0.25
CUX1-209ENST00000487284 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.62■□□□□ 0.25
CUX1-209ENST00000487284 NID2Q14112 1375 aa16.62■□□□□ 0.25
CUX1-209ENST00000487284 COL2A1P02458 1487 aaPredicted RBP16.61■□□□□ 0.25
CUX1-209ENST00000487284 ATRNL1Q5VV63 1379 aa16.61■□□□□ 0.25
CUX1-209ENST00000487284 IQCA1LA6NCM1 817 aa16.61■□□□□ 0.25
CUX1-209ENST00000487284 ORC4O43929 436 aa16.61■□□□□ 0.25
CUX1-209ENST00000487284 CCT2P78371 535 aaKnown RBP16.61■□□□□ 0.25
CUX1-209ENST00000487284 TMEM67Q5HYA8 995 aa16.61■□□□□ 0.25
CUX1-209ENST00000487284 RRP12Q5JTH9 1297 aaKnown RBP16.61■□□□□ 0.25
CUX1-209ENST00000487284 MCTP1Q6DN14 999 aa16.61■□□□□ 0.25
CUX1-209ENST00000487284 APOA5Q6Q788 366 aa16.61■□□□□ 0.25
CUX1-209ENST00000487284 FAM83AQ86UY5 434 aa16.61■□□□□ 0.25
CUX1-209ENST00000487284 ZSCAN29Q8IWY8 852 aaPredicted RBP16.61■□□□□ 0.25
CUX1-209ENST00000487284 FAM151AQ8WW52 585 aa16.61■□□□□ 0.25
CUX1-209ENST00000487284 ESR2Q92731 530 aa16.61■□□□□ 0.25
CUX1-209ENST00000487284 DYNLL2Q96FJ2 89 aa16.61■□□□□ 0.25
CUX1-209ENST00000487284 TAF1DQ9H5J8 278 aaPredicted RBP16.61■□□□□ 0.25
CUX1-209ENST00000487284 NCOA5Q9HCD5 579 aaKnown RBP16.61■□□□□ 0.25
CUX1-209ENST00000487284 NAP1L2Q9ULW6 460 aaPredicted RBP16.61■□□□□ 0.25
CUX1-209ENST00000487284 PTPDC1A2A3K4 754 aa16.6■□□□□ 0.25
CUX1-209ENST00000487284 DHX16O60231 1041 aaKnown RBP16.6■□□□□ 0.25
CUX1-209ENST00000487284 USP50Q70EL3 339 aaPredicted RBP16.6■□□□□ 0.25
CUX1-209ENST00000487284 TTC6Q86TZ1 520 aa16.6■□□□□ 0.25
CUX1-209ENST00000487284 CDAN1Q8IWY9 1227 aa16.6■□□□□ 0.25
CUX1-209ENST00000487284 TMEM39BQ9GZU3 492 aa16.6■□□□□ 0.25
CUX1-209ENST00000487284 TOMM22Q9NS69 142 aa16.6■□□□□ 0.25
CUX1-209ENST00000487284 IFIT3O14879 490 aaKnown RBP16.6■□□□□ 0.25
CUX1-209ENST00000487284 TRAK2O60296 914 aa16.6■□□□□ 0.25
CUX1-209ENST00000487284 SLC3A2P08195 630 aaKnown RBP16.6■□□□□ 0.25
CUX1-209ENST00000487284 SLURP2P0DP57 97 aa16.6■□□□□ 0.25
CUX1-209ENST00000487284 TNNI2P48788 182 aa16.6■□□□□ 0.25
CUX1-209ENST00000487284 TNFAIP1Q13829 316 aa16.6■□□□□ 0.25
CUX1-209ENST00000487284 RASA3Q14644 834 aa16.6■□□□□ 0.25
CUX1-209ENST00000487284 SART3Q15020 963 aaKnown RBP16.6■□□□□ 0.25
CUX1-209ENST00000487284 DHX36Q9H2U1 1008 aaKnown RBP16.6■□□□□ 0.25
CUX1-209ENST00000487284 SENP2Q9HC62 589 aa16.6■□□□□ 0.25
CUX1-209ENST00000487284 KIF3AQ9Y496 699 aa16.6■□□□□ 0.25
CUX1-209ENST00000487284 VPS37CA5D8V6 355 aaPredicted RBP16.59■□□□□ 0.25
CUX1-209ENST00000487284 PRDM1O75626 825 aa16.59■□□□□ 0.25
CUX1-209ENST00000487284 HLA-DOAP06340 250 aa16.59■□□□□ 0.25
CUX1-209ENST00000487284 NT5C2P49902 561 aa16.59■□□□□ 0.25
CUX1-209ENST00000487284 SKOR2Q2VWA4 1001 aaPredicted RBP16.59■□□□□ 0.25
CUX1-209ENST00000487284 APOBEC3FQ8IUX4 373 aaKnown RBP16.59■□□□□ 0.25
CUX1-209ENST00000487284 SLC44A5Q8NCS7 719 aa16.59■□□□□ 0.25
CUX1-209ENST00000487284 CSRNP1Q96S65 589 aa16.59■□□□□ 0.25
CUX1-209ENST00000487284 ATP6V1DQ9Y5K8 247 aa16.59■□□□□ 0.25
CUX1-209ENST00000487284 GABPAQ06546 454 aa16.58■□□□□ 0.24
CUX1-209ENST00000487284 SEC23AQ15436 765 aa16.58■□□□□ 0.24
CUX1-209ENST00000487284 EAPPQ56P03 285 aaPredicted RBP16.58■□□□□ 0.24
CUX1-209ENST00000487284 TMTC2Q8N394 836 aa16.58■□□□□ 0.24
CUX1-209ENST00000487284 ZNF526Q8TF50 670 aaPredicted RBP16.58■□□□□ 0.24
CUX1-209ENST00000487284 CHAMP1Q96JM3 812 aa16.58■□□□□ 0.24
CUX1-209ENST00000487284 DEFB129Q9H1M3 183 aa16.58■□□□□ 0.24
CUX1-209ENST00000487284 LMBRD1Q9NUN5 540 aa16.58■□□□□ 0.24
CUX1-209ENST00000487284 PGAP2Q9UHJ9 254 aa16.58■□□□□ 0.24
CUX1-209ENST00000487284 SERPINB13Q9UIV8 391 aa16.58■□□□□ 0.24
CUX1-209ENST00000487284 PITPNM2Q9BZ72 1349 aa16.58■□□□□ 0.24
CUX1-209ENST00000487284 ERICH2A1L162 156 aa16.57■□□□□ 0.24
CUX1-209ENST00000487284 ZBTB43O43298 467 aa16.57■□□□□ 0.24
CUX1-209ENST00000487284 RCAN1P53805 252 aa16.57■□□□□ 0.24
CUX1-209ENST00000487284 PDE4BQ07343 736 aa16.57■□□□□ 0.24
CUX1-209ENST00000487284 WTAPQ15007 396 aa16.57■□□□□ 0.24
CUX1-209ENST00000487284 C16orf86Q6ZW13 317 aa16.57■□□□□ 0.24
CUX1-209ENST00000487284 CDC37L1Q7L3B6 337 aa16.57■□□□□ 0.24
CUX1-209ENST00000487284 FAM184AQ8NB25 1140 aa16.57■□□□□ 0.24
CUX1-209ENST00000487284 DDX11Q96FC9 970 aa16.57■□□□□ 0.24
CUX1-209ENST00000487284 TEPSINQ96N21 525 aa16.57■□□□□ 0.24
CUX1-209ENST00000487284 UBAC1Q9BSL1 405 aa16.57■□□□□ 0.24
CUX1-209ENST00000487284 EHD4Q9H223 541 aa16.57■□□□□ 0.24
CUX1-209ENST00000487284 DNAJC18Q9H819 358 aa16.57■□□□□ 0.24
CUX1-209ENST00000487284 RRAGCQ9HB90 399 aa16.57■□□□□ 0.24
CUX1-209ENST00000487284 PI4KBQ9UBF8 816 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms