RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 NFIAQ12857 509 aa10.68□□□□□ -0.7
COL12A1-208ENST00000486533 OS9Q13438 667 aaPredicted RBP10.68□□□□□ -0.7
COL12A1-208ENST00000486533 CUL4AQ13619 759 aa10.68□□□□□ -0.7
COL12A1-208ENST00000486533 GLIPR1L2Q4G1C9 344 aa10.68□□□□□ -0.7
COL12A1-208ENST00000486533 MIGA2Q7L4E1 593 aa10.68□□□□□ -0.7
COL12A1-208ENST00000486533 FAM151AQ8WW52 585 aa10.68□□□□□ -0.7
COL12A1-208ENST00000486533 RUFY2Q8WXA3 655 aa10.68□□□□□ -0.7
COL12A1-208ENST00000486533 ZKSCAN4Q969J2 545 aaPredicted RBP10.68□□□□□ -0.7
COL12A1-208ENST00000486533 ATP6V1DQ9Y5K8 247 aa10.68□□□□□ -0.7
COL12A1-208ENST00000486533 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.68□□□□□ -0.7
COL12A1-208ENST00000486533 MCM5P33992 734 aa10.67□□□□□ -0.7
COL12A1-208ENST00000486533 GTF2A2P52657 109 aa10.67□□□□□ -0.7
COL12A1-208ENST00000486533 CRHR2Q13324 411 aa10.67□□□□□ -0.7
COL12A1-208ENST00000486533 PKN2Q16513 984 aaKnown RBP10.67□□□□□ -0.7
COL12A1-208ENST00000486533 SPTY2D1Q68D10 685 aaPredicted RBP10.67□□□□□ -0.7
COL12A1-208ENST00000486533 KIAA1211Q6ZU35 1233 aa10.67□□□□□ -0.7
COL12A1-208ENST00000486533 ZSCAN30Q86W11 494 aa10.67□□□□□ -0.7
COL12A1-208ENST00000486533 SLF2Q8IX21 1173 aa10.67□□□□□ -0.7
COL12A1-208ENST00000486533 KIF1BPQ96EK5 621 aa10.67□□□□□ -0.7
COL12A1-208ENST00000486533 PTPN18Q99952 460 aa10.67□□□□□ -0.7
COL12A1-208ENST00000486533 ZNF341Q9BYN7 854 aa10.67□□□□□ -0.7
COL12A1-208ENST00000486533 LMBRD1Q9NUN5 540 aa10.67□□□□□ -0.7
COL12A1-208ENST00000486533 PDS5AQ29RF7 1337 aaKnown RBP10.66□□□□□ -0.7
COL12A1-208ENST00000486533 TTC41PQ6P2S7 1318 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 CCL15-CCL14A0A0B4J2E2 113 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 SPDYE5A6NIY4 337 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 LETM1O95202 739 aaPredicted RBP10.66□□□□□ -0.7
COL12A1-208ENST00000486533 CHMLP26374 656 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 MLLT1Q03111 559 aaPredicted RBP10.66□□□□□ -0.7
COL12A1-208ENST00000486533 CCL15Q16663 113 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 ZSCAN23Q3MJ62 389 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 PI16Q6UXB8 463 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.66□□□□□ -0.7
COL12A1-208ENST00000486533 ERO1BQ86YB8 467 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 ERC1Q8IUD2 1116 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 SPATA5Q8NB90 893 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 OTUD7AQ8TE49 926 aaPredicted RBP10.66□□□□□ -0.7
COL12A1-208ENST00000486533 SSH3Q8TE77 659 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 RILPL2Q969X0 211 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 ANO2Q9NQ90 1003 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 FAM198AQ9UFP1 575 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 HPS5Q9UPZ3 1129 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 EXOC6BQ9Y2D4 811 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 SNCAIPQ9Y6H5 919 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 TNRC18O15417 2968 aaPredicted RBP10.66□□□□□ -0.7
COL12A1-208ENST00000486533 GAKO14976 1311 aa10.66□□□□□ -0.7
COL12A1-208ENST00000486533 POTEB3A0JP26 581 aa10.65□□□□□ -0.7
COL12A1-208ENST00000486533 TESPA1A2RU30 521 aaPredicted RBP10.65□□□□□ -0.7
COL12A1-208ENST00000486533 HIP1O00291 1037 aa10.65□□□□□ -0.7
COL12A1-208ENST00000486533 SURF6O75683 361 aaKnown RBP10.65□□□□□ -0.7
COL12A1-208ENST00000486533 HOXB1P14653 301 aaPredicted RBP10.65□□□□□ -0.7
COL12A1-208ENST00000486533 TERF1P54274 439 aa10.65□□□□□ -0.7
COL12A1-208ENST00000486533 SOX10P56693 466 aa10.65□□□□□ -0.7
COL12A1-208ENST00000486533 MECOMQ03112 1051 aa10.65□□□□□ -0.7
COL12A1-208ENST00000486533 CAVIN1Q6NZI2 390 aaKnown RBP10.65□□□□□ -0.7
COL12A1-208ENST00000486533 POTEBQ6S5H4 581 aa10.65□□□□□ -0.7
COL12A1-208ENST00000486533 BRI3BPQ8WY22 251 aa10.65□□□□□ -0.7
COL12A1-208ENST00000486533 TMX3Q96JJ7 454 aa10.65□□□□□ -0.7
COL12A1-208ENST00000486533 HMG20BQ9P0W2 317 aa10.65□□□□□ -0.7
COL12A1-208ENST00000486533 TRIM17Q9Y577 477 aa10.65□□□□□ -0.7
COL12A1-208ENST00000486533 DOCK2Q92608 1830 aa10.65□□□□□ -0.7
COL12A1-208ENST00000486533 MROH7-TTC4A0A0A0MT08 1334 aa10.65□□□□□ -0.7
COL12A1-208ENST00000486533 BRCA2P51587 3418 aa10.65□□□□□ -0.71
COL12A1-208ENST00000486533 IRF6O14896 467 aa10.65□□□□□ -0.71
COL12A1-208ENST00000486533 INPP5BP32019 993 aa10.65□□□□□ -0.71
COL12A1-208ENST00000486533 BTDP43251 543 aa10.65□□□□□ -0.71
COL12A1-208ENST00000486533 RGS19P49795 217 aa10.65□□□□□ -0.71
COL12A1-208ENST00000486533 SNAPC2Q13487 334 aa10.65□□□□□ -0.71
COL12A1-208ENST00000486533 TAF1CQ15572 869 aaPredicted RBP10.65□□□□□ -0.71
COL12A1-208ENST00000486533 FBXO46Q6PJ61 603 aaPredicted RBP10.65□□□□□ -0.71
COL12A1-208ENST00000486533 LRSAM1Q6UWE0 723 aa10.65□□□□□ -0.71
COL12A1-208ENST00000486533 ZSCAN29Q8IWY8 852 aaPredicted RBP10.65□□□□□ -0.71
COL12A1-208ENST00000486533 ZNF710Q8N1W2 664 aa10.65□□□□□ -0.71
COL12A1-208ENST00000486533 FAM184AQ8NB25 1140 aa10.65□□□□□ -0.71
COL12A1-208ENST00000486533 HS3ST6Q96QI5 342 aa10.65□□□□□ -0.71
COL12A1-208ENST00000486533 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.65□□□□□ -0.71
COL12A1-208ENST00000486533 WDHD1O75717 1129 aaPredicted RBP10.64□□□□□ -0.71
COL12A1-208ENST00000486533 GLRX3O76003 335 aaKnown RBP10.64□□□□□ -0.71
COL12A1-208ENST00000486533 BRD1O95696 1058 aa10.64□□□□□ -0.71
COL12A1-208ENST00000486533 UQCRFS1P1P0C7P4 283 aa10.64□□□□□ -0.71
COL12A1-208ENST00000486533 CETPP11597 493 aa10.64□□□□□ -0.71
COL12A1-208ENST00000486533 ARID4AP29374 1257 aaPredicted RBP10.64□□□□□ -0.71
COL12A1-208ENST00000486533 MCAMP43121 646 aa10.64□□□□□ -0.71
COL12A1-208ENST00000486533 PPIL2Q13356 520 aa10.64□□□□□ -0.71
COL12A1-208ENST00000486533 PICALMQ13492 652 aa10.64□□□□□ -0.71
COL12A1-208ENST00000486533 TNNI3KQ59H18 835 aa10.64□□□□□ -0.71
COL12A1-208ENST00000486533 TTC39AQ5SRH9 613 aa10.64□□□□□ -0.71
COL12A1-208ENST00000486533 ZFPM1Q8IX07 1006 aa10.64□□□□□ -0.71
COL12A1-208ENST00000486533 ERO1AQ96HE7 468 aa10.64□□□□□ -0.71
COL12A1-208ENST00000486533 IDI2Q9BXS1 227 aa10.64□□□□□ -0.71
COL12A1-208ENST00000486533 ZFYVE28Q9HCC9 887 aa10.64□□□□□ -0.71
COL12A1-208ENST00000486533 RAI14Q9P0K7 980 aa10.64□□□□□ -0.71
COL12A1-208ENST00000486533 LRP2BPQ9P2M1 347 aa10.64□□□□□ -0.71
COL12A1-208ENST00000486533 CCDC39Q9UFE4 941 aa10.64□□□□□ -0.71
COL12A1-208ENST00000486533 FPGT-TNNI3KV9GXZ4 949 aa10.64□□□□□ -0.71
COL12A1-208ENST00000486533 FAM205CA6NFA0 338 aa10.63□□□□□ -0.71
COL12A1-208ENST00000486533 ENTPD3O75355 529 aa10.63□□□□□ -0.71
COL12A1-208ENST00000486533 PRPF40AO75400 957 aaKnown RBP10.63□□□□□ -0.71
COL12A1-208ENST00000486533 GSTO1P78417 241 aa10.63□□□□□ -0.71
COL12A1-208ENST00000486533 SP3Q02447 781 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 401.4 ms