RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 PABPC4Q13310 644 aaKnown RBP eCLIP15.54■□□□□ 0.08
CHMP3-208ENST00000486404 GPAT2Q6NUI2 795 aa15.54■□□□□ 0.08
CHMP3-208ENST00000486404 PROCA1Q8NCQ7 364 aaPredicted RBP15.54■□□□□ 0.08
CHMP3-208ENST00000486404 SDR42E1Q8WUS8 393 aa15.54■□□□□ 0.08
CHMP3-208ENST00000486404 AGTPBP1Q9UPW5 1226 aa15.54■□□□□ 0.08
CHMP3-208ENST00000486404 SLC45A1Q9Y2W3 748 aa15.54■□□□□ 0.08
CHMP3-208ENST00000486404 ADGRA2Q96PE1 1338 aa15.53■□□□□ 0.08
CHMP3-208ENST00000486404 ECM2O94769 699 aaPredicted RBP15.53■□□□□ 0.08
CHMP3-208ENST00000486404 MTMR2Q13614 643 aa15.53■□□□□ 0.08
CHMP3-208ENST00000486404 AAMPQ13685 434 aa15.53■□□□□ 0.08
CHMP3-208ENST00000486404 RRP1BQ14684 758 aaKnown RBP15.53■□□□□ 0.08
CHMP3-208ENST00000486404 UBE3CQ15386 1083 aa15.53■□□□□ 0.08
CHMP3-208ENST00000486404 METTL16Q86W50 562 aaKnown RBP15.53■□□□□ 0.08
CHMP3-208ENST00000486404 FEZ1Q99689 392 aa15.53■□□□□ 0.08
CHMP3-208ENST00000486404 TMOD4Q9NZQ9 345 aa15.53■□□□□ 0.08
CHMP3-208ENST00000486404 PTPN22Q9Y2R2 807 aa15.53■□□□□ 0.08
CHMP3-208ENST00000486404 GH2P01242 217 aa15.52■□□□□ 0.08
CHMP3-208ENST00000486404 MX1P20591 662 aa15.52■□□□□ 0.08
CHMP3-208ENST00000486404 LRRFIP1Q32MZ4 808 aaKnown RBP15.52■□□□□ 0.08
CHMP3-208ENST00000486404 C17orf99Q6UX52 265 aa15.52■□□□□ 0.08
CHMP3-208ENST00000486404 GCC1Q96CN9 775 aa15.52■□□□□ 0.08
CHMP3-208ENST00000486404 ARHGAP39Q9C0H5 1083 aa15.52■□□□□ 0.08
CHMP3-208ENST00000486404 DCP1AQ9NPI6 582 aaPredicted RBP15.52■□□□□ 0.08
CHMP3-208ENST00000486404 GLRX3O76003 335 aaKnown RBP15.51■□□□□ 0.07
CHMP3-208ENST00000486404 GNRH1P01148 92 aa15.51■□□□□ 0.07
CHMP3-208ENST00000486404 RAB3GAP1Q15042 981 aa15.51■□□□□ 0.07
CHMP3-208ENST00000486404 ABCB5Q2M3G0 1257 aa15.51■□□□□ 0.07
CHMP3-208ENST00000486404 SLFNL1Q499Z3 407 aa15.51■□□□□ 0.07
CHMP3-208ENST00000486404 CERKLQ49MI3 558 aaPredicted RBP15.51■□□□□ 0.07
CHMP3-208ENST00000486404 TREML2Q5T2D2 321 aa15.51■□□□□ 0.07
CHMP3-208ENST00000486404 KBTBD3Q8NAB2 608 aa15.51■□□□□ 0.07
CHMP3-208ENST00000486404 WDR18Q9BV38 432 aa15.51■□□□□ 0.07
CHMP3-208ENST00000486404 CABP5Q9NP86 173 aa15.51■□□□□ 0.07
CHMP3-208ENST00000486404 ATP8A2Q9NTI2 1148 aa15.51■□□□□ 0.07
CHMP3-208ENST00000486404 SLC4A4Q9Y6R1 1079 aa15.51■□□□□ 0.07
CHMP3-208ENST00000486404 FMNL1O95466 1100 aaPredicted RBP15.5■□□□□ 0.07
CHMP3-208ENST00000486404 OSBPP22059 807 aa15.5■□□□□ 0.07
CHMP3-208ENST00000486404 FCGRTP55899 365 aa15.5■□□□□ 0.07
CHMP3-208ENST00000486404 BACE1P56817 501 aa15.5■□□□□ 0.07
CHMP3-208ENST00000486404 IRX3P78415 501 aaPredicted RBP15.5■□□□□ 0.07
CHMP3-208ENST00000486404 HDAC1Q13547 482 aaPredicted RBP15.5■□□□□ 0.07
CHMP3-208ENST00000486404 SHROOM1Q2M3G4 852 aaPredicted RBP15.5■□□□□ 0.07
CHMP3-208ENST00000486404 SLC9C1Q4G0N8 1177 aa15.5■□□□□ 0.07
CHMP3-208ENST00000486404 ANKRD45Q5TZF3 282 aa15.5■□□□□ 0.07
CHMP3-208ENST00000486404 FSD1Q9BTV5 496 aa15.5■□□□□ 0.07
CHMP3-208ENST00000486404 USP17L10C9JJH3 530 aa15.49■□□□□ 0.07
CHMP3-208ENST00000486404 MPHOSPH10O00566 681 aaKnown RBP15.49■□□□□ 0.07
CHMP3-208ENST00000486404 PRKAB2O43741 272 aa15.49■□□□□ 0.07
CHMP3-208ENST00000486404 CHGBP05060 677 aa15.49■□□□□ 0.07
CHMP3-208ENST00000486404 ZFYP08048 801 aaPredicted RBP15.49■□□□□ 0.07
CHMP3-208ENST00000486404 BCRP11274 1271 aa15.49■□□□□ 0.07
CHMP3-208ENST00000486404 HOXD10P28358 340 aa15.49■□□□□ 0.07
CHMP3-208ENST00000486404 PSMC4P43686 418 aa15.49■□□□□ 0.07
CHMP3-208ENST00000486404 PLCD1P51178 756 aa15.49■□□□□ 0.07
CHMP3-208ENST00000486404 MLLT1Q03111 559 aaPredicted RBP15.49■□□□□ 0.07
CHMP3-208ENST00000486404 TATDN1Q6P1N9 297 aa15.49■□□□□ 0.07
CHMP3-208ENST00000486404 OTUD7AQ8TE49 926 aaPredicted RBP15.49■□□□□ 0.07
CHMP3-208ENST00000486404 SWAP70Q9UH65 585 aa15.49■□□□□ 0.07
CHMP3-208ENST00000486404 PTCH2Q9Y6C5 1203 aa15.49■□□□□ 0.07
CHMP3-208ENST00000486404 MYPNQ86TC9 1320 aa15.48■□□□□ 0.07
CHMP3-208ENST00000486404 C19orf81C9J6K1 198 aa15.48■□□□□ 0.07
CHMP3-208ENST00000486404 RNF113AO15541 343 aaKnown RBP15.48■□□□□ 0.07
CHMP3-208ENST00000486404 CYP2D6P10635 497 aa15.48■□□□□ 0.07
CHMP3-208ENST00000486404 SHMT1P34896 483 aa15.48■□□□□ 0.07
CHMP3-208ENST00000486404 PRMT2P55345 433 aa15.48■□□□□ 0.07
CHMP3-208ENST00000486404 JAG1P78504 1218 aa15.48■□□□□ 0.07
CHMP3-208ENST00000486404 CAP1Q01518 475 aa15.48■□□□□ 0.07
CHMP3-208ENST00000486404 ZYXQ15942 572 aaKnown RBP15.48■□□□□ 0.07
CHMP3-208ENST00000486404 SH3D19Q5HYK7 790 aa15.48■□□□□ 0.07
CHMP3-208ENST00000486404 APPBP2Q92624 585 aa15.48■□□□□ 0.07
CHMP3-208ENST00000486404 TRIM47Q96LD4 638 aa15.48■□□□□ 0.07
CHMP3-208ENST00000486404 PUS7LQ9H0K6 701 aaKnown RBP15.48■□□□□ 0.07
CHMP3-208ENST00000486404 RWDD1Q9H446 243 aaPredicted RBP15.48■□□□□ 0.07
CHMP3-208ENST00000486404 HTTP42858 3142 aa15.48■□□□□ 0.07
CHMP3-208ENST00000486404 GCLCP48506 637 aaPredicted RBP15.47■□□□□ 0.07
CHMP3-208ENST00000486404 USP17L2Q6R6M4 530 aa15.47■□□□□ 0.07
CHMP3-208ENST00000486404 NBPF11Q86T75 865 aa15.47■□□□□ 0.07
CHMP3-208ENST00000486404 ANKRD13CQ8N6S4 541 aa15.47■□□□□ 0.07
CHMP3-208ENST00000486404 EXOC6Q8TAG9 804 aa15.47■□□□□ 0.07
CHMP3-208ENST00000486404 PI4K2BQ8TCG2 481 aa15.47■□□□□ 0.07
CHMP3-208ENST00000486404 RAET1EQ8TD07 263 aa15.47■□□□□ 0.07
CHMP3-208ENST00000486404 ASCC2Q9H1I8 757 aaPredicted RBP15.47■□□□□ 0.07
CHMP3-208ENST00000486404 FOXD4L1Q9NU39 408 aa15.47■□□□□ 0.07
CHMP3-208ENST00000486404 ARPP21Q9UBL0 812 aaPredicted RBP15.47■□□□□ 0.07
CHMP3-208ENST00000486404 TAOK2Q9UL54 1235 aa15.47■□□□□ 0.07
CHMP3-208ENST00000486404 TNPO2O14787 897 aaKnown RBP15.46■□□□□ 0.07
CHMP3-208ENST00000486404 USP14P54578 494 aa15.46■□□□□ 0.07
CHMP3-208ENST00000486404 GABPAQ06546 454 aa15.46■□□□□ 0.07
CHMP3-208ENST00000486404 FAM110CQ1W6H9 321 aa15.46■□□□□ 0.07
CHMP3-208ENST00000486404 SLC44A5Q8NCS7 719 aa15.46■□□□□ 0.07
CHMP3-208ENST00000486404 ARMC5Q96C12 935 aa15.46■□□□□ 0.07
CHMP3-208ENST00000486404 SRRDQ9UH36 339 aa15.46■□□□□ 0.07
CHMP3-208ENST00000486404 CYP2D7A0A087X1C5 515 aa15.45■□□□□ 0.06
CHMP3-208ENST00000486404 USP17L12C9JPN9 530 aa15.45■□□□□ 0.06
CHMP3-208ENST00000486404 USP17L21D6R901 530 aa15.45■□□□□ 0.06
CHMP3-208ENST00000486404 GPAA1O43292 621 aa15.45■□□□□ 0.06
CHMP3-208ENST00000486404 GNAT2P19087 354 aa15.45■□□□□ 0.06
CHMP3-208ENST00000486404 TDO2P48775 406 aa15.45■□□□□ 0.06
CHMP3-208ENST00000486404 RGS19P49795 217 aa15.45■□□□□ 0.06
CHMP3-208ENST00000486404 EVX2Q03828 476 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms