RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 RASA1P20936 1047 aa9.72□□□□□ -0.85
SYNE1-225ENST00000481502 NEK4P51957 841 aa9.72□□□□□ -0.85
SYNE1-225ENST00000481502 CTDSPL2Q05D32 466 aa9.72□□□□□ -0.85
SYNE1-225ENST00000481502 CERKLQ49MI3 558 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-225ENST00000481502 TMEM179Q6ZVK1 233 aa9.72□□□□□ -0.85
SYNE1-225ENST00000481502 KRT26Q7Z3Y9 468 aa9.72□□□□□ -0.85
SYNE1-225ENST00000481502 ZFPM1Q8IX07 1006 aa9.72□□□□□ -0.85
SYNE1-225ENST00000481502 ZNF274Q96GC6 653 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-225ENST00000481502 MAP3K14Q99558 947 aa9.72□□□□□ -0.85
SYNE1-225ENST00000481502 ZNF341Q9BYN7 854 aa9.72□□□□□ -0.85
SYNE1-225ENST00000481502 TMEM39BQ9GZU3 492 aa9.72□□□□□ -0.85
SYNE1-225ENST00000481502 KANSL2Q9H9L4 492 aa9.72□□□□□ -0.85
SYNE1-225ENST00000481502 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.72□□□□□ -0.85
SYNE1-225ENST00000481502 RRAGCQ9HB90 399 aa9.72□□□□□ -0.85
SYNE1-225ENST00000481502 CABP5Q9NP86 173 aa9.72□□□□□ -0.85
SYNE1-225ENST00000481502 TSHZ2Q9NRE2 1034 aa9.72□□□□□ -0.85
SYNE1-225ENST00000481502 PDRG1Q9NUG6 133 aa9.72□□□□□ -0.85
SYNE1-225ENST00000481502 SAP30BPQ9UHR5 308 aaKnown RBP9.72□□□□□ -0.85
SYNE1-225ENST00000481502 ANGEL1Q9UNK9 670 aaKnown RBP9.72□□□□□ -0.85
SYNE1-225ENST00000481502 UTRNP46939 3433 aa9.71□□□□□ -0.85
SYNE1-225ENST00000481502 LAMB1P07942 1786 aa9.71□□□□□ -0.85
SYNE1-225ENST00000481502 CYP2D7A0A087X1C5 515 aa9.71□□□□□ -0.86
SYNE1-225ENST00000481502 B4E1Z4 1266 aa9.71□□□□□ -0.86
SYNE1-225ENST00000481502 RANBP6O60518 1105 aaKnown RBP9.71□□□□□ -0.86
SYNE1-225ENST00000481502 KDM4AO75164 1064 aa9.71□□□□□ -0.86
SYNE1-225ENST00000481502 ASNSP08243 561 aa9.71□□□□□ -0.86
SYNE1-225ENST00000481502 TSPY3P0CV98 308 aa9.71□□□□□ -0.86
SYNE1-225ENST00000481502 TSPY8P0CW00 308 aa9.71□□□□□ -0.86
SYNE1-225ENST00000481502 CYP2D6P10635 497 aa9.71□□□□□ -0.86
SYNE1-225ENST00000481502 SHMT1P34896 483 aa9.71□□□□□ -0.86
SYNE1-225ENST00000481502 ANP32AP39687 249 aaKnown RBP9.71□□□□□ -0.86
SYNE1-225ENST00000481502 CAP2P40123 477 aa9.71□□□□□ -0.86
SYNE1-225ENST00000481502 TFAP4Q01664 338 aa9.71□□□□□ -0.86
SYNE1-225ENST00000481502 BECN1Q14457 450 aa9.71□□□□□ -0.86
SYNE1-225ENST00000481502 IGDCC4Q8TDY8 1250 aa9.71□□□□□ -0.86
SYNE1-225ENST00000481502 MKL1Q969V6 931 aa9.71□□□□□ -0.86
SYNE1-225ENST00000481502 ZSCAN10Q96SZ4 725 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-225ENST00000481502 UBAC1Q9BSL1 405 aa9.71□□□□□ -0.86
SYNE1-225ENST00000481502 SH2B1Q9NRF2 756 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-225ENST00000481502 NYAP2Q9P242 653 aa9.71□□□□□ -0.86
SYNE1-225ENST00000481502 LIMCH1Q9UPQ0 1083 aa9.71□□□□□ -0.86
SYNE1-225ENST00000481502 BAZ2AQ9UIF9 1905 aaKnown RBP9.71□□□□□ -0.86
SYNE1-225ENST00000481502 ADAMTSL1Q8N6G6 1762 aa9.7□□□□□ -0.86
SYNE1-225ENST00000481502 IGKV6D-41A0A0C4DH26 115 aa9.7□□□□□ -0.86
SYNE1-225ENST00000481502 PHF20L1A8MW92 1017 aa9.7□□□□□ -0.86
SYNE1-225ENST00000481502 PRC1O43663 620 aa9.7□□□□□ -0.86
SYNE1-225ENST00000481502 CALM1P0DP23 149 aa9.7□□□□□ -0.86
SYNE1-225ENST00000481502 CALM2P0DP24 149 aa9.7□□□□□ -0.86
SYNE1-225ENST00000481502 CALM3P0DP25 149 aa9.7□□□□□ -0.86
SYNE1-225ENST00000481502 PDIA4P13667 645 aaKnown RBP9.7□□□□□ -0.86
SYNE1-225ENST00000481502 EAPPQ56P03 285 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-225ENST00000481502 NOL9Q5SY16 702 aaKnown RBP9.7□□□□□ -0.86
SYNE1-225ENST00000481502 DYNLL2Q96FJ2 89 aa9.7□□□□□ -0.86
SYNE1-225ENST00000481502 DNAJC18Q9H819 358 aa9.7□□□□□ -0.86
SYNE1-225ENST00000481502 GPBP1L1Q9HC44 474 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-225ENST00000481502 TOMM22Q9NS69 142 aa9.7□□□□□ -0.86
SYNE1-225ENST00000481502 RBM19Q9Y4C8 960 aaKnown RBP9.7□□□□□ -0.86
SYNE1-225ENST00000481502 NEDD4P46934 1319 aa9.7□□□□□ -0.86
SYNE1-225ENST00000481502 CCDC196A0A1B0GTZ2 297 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 SH2B2O14492 632 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-225ENST00000481502 IFIT3O14879 490 aaKnown RBP9.69□□□□□ -0.86
SYNE1-225ENST00000481502 DHX16O60231 1041 aaKnown RBP9.69□□□□□ -0.86
SYNE1-225ENST00000481502 ASTN2O75129 1339 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-225ENST00000481502 TTLL1O95922 423 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 IREB2P48200 963 aaKnown RBP9.69□□□□□ -0.86
SYNE1-225ENST00000481502 ANTXR2P58335 489 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 FGD1P98174 961 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 WTAPQ15007 396 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 SEC23AQ15436 765 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 ABCB5Q2M3G0 1257 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 NBPF12Q5TAG4 269 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-225ENST00000481502 RCSD1Q6JBY9 416 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 CHADLQ6NUI6 762 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 SYNE3Q6ZMZ3 975 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 Q6ZUG5 572 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 ARMC9Q7Z3E5 817 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 USP48Q86UV5 1035 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 KLRG1Q96E93 195 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 UPF3BQ9BZI7 483 aaKnown RBP9.69□□□□□ -0.86
SYNE1-225ENST00000481502 SH2D4AQ9H788 454 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 MTMR4Q9NYA4 1195 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 CLEC11AQ9Y240 323 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 TACC3Q9Y6A5 838 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 TAF6LQ9Y6J9 622 aa9.69□□□□□ -0.86
SYNE1-225ENST00000481502 NID2Q14112 1375 aa9.68□□□□□ -0.86
SYNE1-225ENST00000481502 TNKSO95271 1327 aa9.68□□□□□ -0.86
SYNE1-225ENST00000481502 PRDM1O75626 825 aa9.68□□□□□ -0.86
SYNE1-225ENST00000481502 DDAH1O94760 285 aa9.68□□□□□ -0.86
SYNE1-225ENST00000481502 TOP1P11387 765 aaKnown RBP9.68□□□□□ -0.86
SYNE1-225ENST00000481502 SMARCA1P28370 1054 aa9.68□□□□□ -0.86
SYNE1-225ENST00000481502 AK2P54819 239 aa9.68□□□□□ -0.86
SYNE1-225ENST00000481502 MAP3K9P80192 1104 aa9.68□□□□□ -0.86
SYNE1-225ENST00000481502 TMEM67Q5HYA8 995 aa9.68□□□□□ -0.86
SYNE1-225ENST00000481502 RRP12Q5JTH9 1297 aaKnown RBP9.68□□□□□ -0.86
SYNE1-225ENST00000481502 IFIT1BQ5T764 474 aaKnown RBP9.68□□□□□ -0.86
SYNE1-225ENST00000481502 CYB5R4Q7L1T6 521 aa9.68□□□□□ -0.86
SYNE1-225ENST00000481502 HSCBQ8IWL3 235 aa9.68□□□□□ -0.86
SYNE1-225ENST00000481502 ANKRD13AQ8IZ07 590 aa9.68□□□□□ -0.86
SYNE1-225ENST00000481502 ENAHQ8N8S7 591 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-225ENST00000481502 RGS22Q8NE09 1264 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms