RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 UBAC1Q9BSL1 405 aa20.68■□□□□ 0.9
UPF3A-206ENST00000480362 DNAJC18Q9H819 358 aa20.68■□□□□ 0.9
UPF3A-206ENST00000480362 ANGEL1Q9UNK9 670 aaKnown RBP20.68■□□□□ 0.9
UPF3A-206ENST00000480362 SIPA1L1O43166 1804 aa20.68■□□□□ 0.9
UPF3A-206ENST00000480362 ERICH2A1L162 156 aa20.67■□□□□ 0.9
UPF3A-206ENST00000480362 FAM196BA6NMK8 535 aa20.67■□□□□ 0.9
UPF3A-206ENST00000480362 TSPY3P0CV98 308 aa20.67■□□□□ 0.9
UPF3A-206ENST00000480362 TSPY8P0CW00 308 aa20.67■□□□□ 0.9
UPF3A-206ENST00000480362 SHMT1P34896 483 aa20.67■□□□□ 0.9
UPF3A-206ENST00000480362 EPHX2P34913 555 aa20.67■□□□□ 0.9
UPF3A-206ENST00000480362 ME3Q16798 604 aa20.67■□□□□ 0.9
UPF3A-206ENST00000480362 SPRYD3Q8NCJ5 442 aa20.67■□□□□ 0.9
UPF3A-206ENST00000480362 LY9Q9HBG7 655 aa20.67■□□□□ 0.9
UPF3A-206ENST00000480362 GGA3Q9NZ52 723 aa20.67■□□□□ 0.9
UPF3A-206ENST00000480362 LARGE1O95461 756 aa20.66■□□□□ 0.9
UPF3A-206ENST00000480362 LIFRP42702 1097 aa20.66■□□□□ 0.9
UPF3A-206ENST00000480362 WTAPQ15007 396 aa20.66■□□□□ 0.9
UPF3A-206ENST00000480362 USP50Q70EL3 339 aaPredicted RBP20.66■□□□□ 0.9
UPF3A-206ENST00000480362 CDAN1Q8IWY9 1227 aa20.66■□□□□ 0.9
UPF3A-206ENST00000480362 NEDD1Q8NHV4 660 aa20.66■□□□□ 0.9
UPF3A-206ENST00000480362 DEFB129Q9H1M3 183 aa20.66■□□□□ 0.9
UPF3A-206ENST00000480362 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.66■□□□□ 0.91e-6■■■□□ 14.9
UPF3A-206ENST00000480362 SENP2Q9HC62 589 aa20.66■□□□□ 0.9
UPF3A-206ENST00000480362 SH2B1Q9NRF2 756 aaPredicted RBP20.66■□□□□ 0.9
UPF3A-206ENST00000480362 BRPF3Q9ULD4 1205 aa20.66■□□□□ 0.9
UPF3A-206ENST00000480362 TNKSO95271 1327 aa20.66■□□□□ 0.9
UPF3A-206ENST00000480362 POTECB2RU33 542 aa20.65■□□□□ 0.9
UPF3A-206ENST00000480362 NMT2O60551 498 aa20.65■□□□□ 0.9
UPF3A-206ENST00000480362 EVCP57679 992 aa20.65■□□□□ 0.9
UPF3A-206ENST00000480362 SEC23AQ15436 765 aa20.65■□□□□ 0.9
UPF3A-206ENST00000480362 TATDN1Q6P1N9 297 aa20.65■□□□□ 0.9
UPF3A-206ENST00000480362 NFXL1Q6ZNB6 911 aa20.65■□□□□ 0.9
UPF3A-206ENST00000480362 TMTC2Q8N394 836 aa20.65■□□□□ 0.9
UPF3A-206ENST00000480362 TEPSINQ96N21 525 aa20.65■□□□□ 0.9
UPF3A-206ENST00000480362 TCP11L1Q9NUJ3 509 aa20.65■□□□□ 0.9
UPF3A-206ENST00000480362 HERC5Q9UII4 1024 aaKnown RBP20.65■□□□□ 0.9
UPF3A-206ENST00000480362 NAP1L2Q9ULW6 460 aaPredicted RBP20.65■□□□□ 0.9
UPF3A-206ENST00000480362 KLF18A0A0U1RQI7 1052 aa20.64■□□□□ 0.89
UPF3A-206ENST00000480362 IQCA1LA6NCM1 817 aa20.64■□□□□ 0.89
UPF3A-206ENST00000480362 HSP90AA1P07900 732 aaKnown RBP20.64■□□□□ 0.89
UPF3A-206ENST00000480362 AKR1B1P15121 316 aa20.64■□□□□ 0.89
UPF3A-206ENST00000480362 CUL4AQ13619 759 aa20.64■□□□□ 0.89
UPF3A-206ENST00000480362 CCDC178Q5BJE1 867 aa20.64■□□□□ 0.89
UPF3A-206ENST00000480362 ENAHQ8N8S7 591 aaPredicted RBP20.64■□□□□ 0.89
UPF3A-206ENST00000480362 ZNF274Q96GC6 653 aaPredicted RBP20.64■□□□□ 0.89
UPF3A-206ENST00000480362 CCDC17Q96LX7 622 aa20.64■□□□□ 0.89
UPF3A-206ENST00000480362 TAF1DQ9H5J8 278 aaPredicted RBP20.64■□□□□ 0.89
UPF3A-206ENST00000480362 IL17RBQ9NRM6 502 aa20.64■□□□□ 0.89
UPF3A-206ENST00000480362 PITPNM2Q9BZ72 1349 aa20.63■□□□□ 0.89
UPF3A-206ENST00000480362 CCDC69A6NI79 296 aa20.63■□□□□ 0.89
UPF3A-206ENST00000480362 TBC1D12O60347 775 aa20.63■□□□□ 0.89
UPF3A-206ENST00000480362 PDIA3P30101 505 aaKnown RBP20.63■□□□□ 0.89
UPF3A-206ENST00000480362 STK3Q13188 491 aa20.63■□□□□ 0.89
UPF3A-206ENST00000480362 CERKLQ49MI3 558 aaPredicted RBP20.63■□□□□ 0.89
UPF3A-206ENST00000480362 SGMS1Q86VZ5 419 aa20.63■□□□□ 0.89
UPF3A-206ENST00000480362 NECAB1Q8N987 351 aa20.63■□□□□ 0.89
UPF3A-206ENST00000480362 DCPSQ96C86 337 aaKnown RBP20.63■□□□□ 0.89
UPF3A-206ENST00000480362 FOXD4L1Q9NU39 408 aa20.63■□□□□ 0.89
UPF3A-206ENST00000480362 WDR90Q96KV7 1748 aa20.63■□□□□ 0.89
UPF3A-206ENST00000480362 SCN4AP35499 1836 aa20.62■□□□□ 0.89
UPF3A-206ENST00000480362 IFIT1BQ5T764 474 aaKnown RBP20.62■□□□□ 0.89
UPF3A-206ENST00000480362 MIGA2Q7L4E1 593 aa20.62■□□□□ 0.89
UPF3A-206ENST00000480362 CCDC83Q8IWF9 413 aa20.62■□□□□ 0.89
UPF3A-206ENST00000480362 SLKQ9H2G2 1235 aaPredicted RBP20.62■□□□□ 0.89
UPF3A-206ENST00000480362 MYH8P13535 1937 aa20.62■□□□□ 0.89
UPF3A-206ENST00000480362 MPHOSPH10O00566 681 aaKnown RBP20.61■□□□□ 0.89
UPF3A-206ENST00000480362 PFKFB2O60825 505 aa20.61■□□□□ 0.89
UPF3A-206ENST00000480362 MAP3K10Q02779 954 aa20.61■□□□□ 0.89
UPF3A-206ENST00000480362 NBPF12Q5TAG4 269 aaPredicted RBP20.61■□□□□ 0.89
UPF3A-206ENST00000480362 RCSD1Q6JBY9 416 aa20.61■□□□□ 0.89
UPF3A-206ENST00000480362 DGKHQ86XP1 1220 aa20.61■□□□□ 0.89
UPF3A-206ENST00000480362 ANKS1AQ92625 1134 aa20.61■□□□□ 0.89
UPF3A-206ENST00000480362 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.61■□□□□ 0.89
UPF3A-206ENST00000480362 PPP2R3BQ9Y5P8 575 aa20.61■□□□□ 0.89
UPF3A-206ENST00000480362 SLC12A7Q9Y666 1083 aa20.61■□□□□ 0.89
UPF3A-206ENST00000480362 GOLGA8BA8MQT2 603 aa20.6■□□□□ 0.89
UPF3A-206ENST00000480362 CCT2P78371 535 aaKnown RBP20.6■□□□□ 0.89
UPF3A-206ENST00000480362 ST3GAL1Q11201 340 aa20.6■□□□□ 0.89
UPF3A-206ENST00000480362 EAPPQ56P03 285 aaPredicted RBP20.6■□□□□ 0.89
UPF3A-206ENST00000480362 PRAMEF18Q5VWM3 479 aa20.6■□□□□ 0.89
UPF3A-206ENST00000480362 APOA5Q6Q788 366 aa20.6■□□□□ 0.89
UPF3A-206ENST00000480362 SYNE3Q6ZMZ3 975 aa20.6■□□□□ 0.89
UPF3A-206ENST00000480362 PNMA8AQ86V59 439 aaPredicted RBP20.6■□□□□ 0.89
UPF3A-206ENST00000480362 RAB11FIP4Q86YS3 637 aa20.6■□□□□ 0.89
UPF3A-206ENST00000480362 ZC3H15Q8WU90 426 aaKnown RBP20.6■□□□□ 0.89
UPF3A-206ENST00000480362 PLIN4Q96Q06 1357 aa20.59■□□□□ 0.89
UPF3A-206ENST00000480362 IGKV6D-41A0A0C4DH26 115 aa20.59■□□□□ 0.89
UPF3A-206ENST00000480362 GDF11O95390 407 aa20.59■□□□□ 0.89
UPF3A-206ENST00000480362 SCRN1Q12765 414 aa20.59■□□□□ 0.89
UPF3A-206ENST00000480362 RRP1BQ14684 758 aaKnown RBP20.59■□□□□ 0.89
UPF3A-206ENST00000480362 ABCB5Q2M3G0 1257 aa20.59■□□□□ 0.89
UPF3A-206ENST00000480362 SULF1Q8IWU6 871 aa20.59■□□□□ 0.89
UPF3A-206ENST00000480362 GTF3C6Q969F1 213 aa20.59■□□□□ 0.89
UPF3A-206ENST00000480362 CEP95Q96GE4 821 aa20.59■□□□□ 0.89
UPF3A-206ENST00000480362 RRAGCQ9HB90 399 aa20.59■□□□□ 0.89
UPF3A-206ENST00000480362 HPS5Q9UPZ3 1129 aa20.59■□□□□ 0.89
UPF3A-206ENST00000480362 POLR2AP24928 1970 aaKnown RBP20.58■□□□□ 0.89
UPF3A-206ENST00000480362 ZBTB43O43298 467 aa20.58■□□□□ 0.89
UPF3A-206ENST00000480362 ZNF654Q8IZM8 581 aa20.58■□□□□ 0.89
UPF3A-206ENST00000480362 HOOK2Q96ED9 719 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms