RNA–Protein interactions for RNA: ENST00000480057.1

VTI1A-204, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-204	ENST00000480057	COL2A1	P02458	1487 aa	Predicted RBP	12.83	□□□□□ -0.36
VTI1A-204	ENST00000480057	PLIN4	Q96Q06	1357 aa		12.82	□□□□□ -0.36
VTI1A-204	ENST00000480057	SMIM22	K7EJ46	135 aa		12.82	□□□□□ -0.36
VTI1A-204	ENST00000480057	PRDM1	O75626	825 aa		12.82	□□□□□ -0.36
VTI1A-204	ENST00000480057	WDHD1	O75717	1129 aa	Predicted RBP	12.82	□□□□□ -0.36
VTI1A-204	ENST00000480057	MMP14	P50281	582 aa		12.82	□□□□□ -0.36
VTI1A-204	ENST00000480057	TROAP	Q12815	778 aa		12.82	□□□□□ -0.36
VTI1A-204	ENST00000480057	APOBEC3H	Q6NTF7	200 aa	Known RBP	12.82	□□□□□ -0.36
VTI1A-204	ENST00000480057	BRAP	Q7Z569	592 aa		12.82	□□□□□ -0.36
VTI1A-204	ENST00000480057	SYAP1	Q96A49	352 aa	Predicted RBP	12.82	□□□□□ -0.36
VTI1A-204	ENST00000480057	ZNF396	Q96N95	335 aa	Predicted RBP	12.82	□□□□□ -0.36
VTI1A-204	ENST00000480057	IDI2	Q9BXS1	227 aa		12.82	□□□□□ -0.36
VTI1A-204	ENST00000480057	RNF26	Q9BY78	433 aa	Predicted RBP	12.82	□□□□□ -0.36
VTI1A-204	ENST00000480057	USP40	Q9NVE5	1235 aa		12.82	□□□□□ -0.36
VTI1A-204	ENST00000480057	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.82	□□□□□ -0.36
VTI1A-204	ENST00000480057	CNPY2	Q9Y2B0	182 aa		12.82	□□□□□ -0.36
VTI1A-204	ENST00000480057	TCHH	Q07283	1943 aa		12.82	□□□□□ -0.36
VTI1A-204	ENST00000480057	ZBTB7A	O95365	584 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	DEXI	O95424	95 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	TSPY3	P0CV98	308 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	TSPY8	P0CW00	308 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	RASA1	P20936	1047 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	NOV	P48745	357 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	CDK8	P49336	464 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	PLCD1	P51178	756 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	TFAP4	Q01664	338 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	GABPA	Q06546	454 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	DALRD3	Q5D0E6	543 aa	Known RBP	12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	CDC42EP5	Q6NZY7	148 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	NBPF11	Q86T75	865 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	STK11IP	Q8N1F8	1099 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	NEDD1	Q8NHV4	660 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	GPT2	Q8TD30	523 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	SGIP1	Q9BQI5	828 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	ALG1	Q9BT22	464 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	OSBPL5	Q9H0X9	879 aa	Predicted RBP	12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	EHD4	Q9H223	541 aa		12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	DHX36	Q9H2U1	1008 aa	Known RBP	12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057	RBM27	Q9P2N5	1060 aa	Known RBP	12.81	□□□□□ -0.36
VTI1A-204	ENST00000480057		F8W031	263 aa	Predicted RBP	12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	HLA-DOA	P06340	250 aa		12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	VIL1	P09327	827 aa	Known RBP	12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	RXRA	P19793	462 aa		12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	KIF5B	P33176	963 aa		12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	TRIM29	Q14134	588 aa		12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	PPP4R3B	Q5MIZ7	849 aa		12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	RCSD1	Q6JBY9	416 aa		12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	RSBN1L	Q6PCB5	846 aa	Predicted RBP	12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	FERMT3	Q86UX7	667 aa		12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	RAB11FIP4	Q86YS3	637 aa		12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	LARGE2	Q8N3Y3	721 aa		12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	CTCFL	Q8NI51	663 aa	Predicted RBP	12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	UPF1	Q92900	1129 aa	Known RBP eCLIP	12.8	□□□□□ -0.36	8e-7	■■■■■ 27.8
VTI1A-204	ENST00000480057	DYNLL2	Q96FJ2	89 aa		12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	MYL10	Q9BUA6	226 aa		12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	MXD3	Q9BW11	206 aa		12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	KAT14	Q9H8E8	782 aa		12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	SAP30BP	Q9UHR5	308 aa	Known RBP	12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	LTBP3	Q9NS15	1303 aa		12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	FER1L6	Q2WGJ9	1857 aa		12.8	□□□□□ -0.36
VTI1A-204	ENST00000480057	YDJC	A8MPS7	323 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	PRPF3	O43395	683 aa	Known RBP	12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	FIBP	O43427	364 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	DTNB	O60941	627 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	ENTPD3	O75355	529 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	GNAQ	P50148	359 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	SCNN1D	P51172	638 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	ZNF445	P59923	1031 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	EVX2	Q03828	476 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	FAM47A	Q5JRC9	791 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	TMTC3	Q6ZXV5	915 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	KIAA0825	Q8IV33	1275 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	NIM1K	Q8IY84	436 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	FAM177A1	Q8N128	213 aa	Predicted RBP	12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	NUP133	Q8WUM0	1156 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	CHAMP1	Q96JM3	812 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	SLC26A6	Q9BXS9	759 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	KCNQ5	Q9NR82	932 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	ZNRF3	Q9ULT6	936 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	ADAMTSL1	Q8N6G6	1762 aa		12.79	□□□□□ -0.36
VTI1A-204	ENST00000480057	XBP1	P17861	261 aa		12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	DEK	P35659	375 aa	Known RBP	12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	AKAP17A	Q02040	695 aa	Known RBP	12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	KIF23	Q02241	960 aa	Predicted RBP	12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	FUT2	Q10981	343 aa		12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	R3HDM1	Q15032	1099 aa	Known RBP	12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	FOXD4L3	Q6VB84	417 aa	Predicted RBP	12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	CCDC144CP	Q8IYA2	1237 aa		12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	AGBL3	Q8NEM8	1001 aa		12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	LEO1	Q8WVC0	666 aa	Predicted RBP	12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	PHKB	Q93100	1093 aa		12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	SPATA32	Q96LK8	384 aa		12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	CCDC17	Q96LX7	622 aa		12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	GML	Q99445	158 aa		12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	LZTS2	Q9BRK4	669 aa		12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	DDX4	Q9NQI0	724 aa	Known RBP	12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	IL17RB	Q9NRM6	502 aa		12.78	□□□□□ -0.36
VTI1A-204	ENST00000480057	SERPINB13	Q9UIV8	391 aa		12.78	□□□□□ -0.36

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