RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 KLHL6Q8WZ60 621 aa7.38□□□□□ -1.23
UPF3B-203ENST00000478840 PCDH12Q9NPG4 1184 aa7.38□□□□□ -1.23
UPF3B-203ENST00000478840 ZNF214Q9UL59 606 aaPredicted RBP7.38□□□□□ -1.23
UPF3B-203ENST00000478840 COL4A3BPQ9Y5P4 624 aa7.38□□□□□ -1.23
UPF3B-203ENST00000478840 PTCH2Q9Y6C5 1203 aa7.38□□□□□ -1.23
UPF3B-203ENST00000478840 PRAMEF27A3QJZ7 478 aa7.37□□□□□ -1.23
UPF3B-203ENST00000478840 CHURC1-FNTBB4DL54 471 aa7.37□□□□□ -1.23
UPF3B-203ENST00000478840 DEAF1O75398 565 aaPredicted RBP7.37□□□□□ -1.23
UPF3B-203ENST00000478840 SLURP2P0DP57 97 aa7.37□□□□□ -1.23
UPF3B-203ENST00000478840 NTF4P34130 210 aa7.37□□□□□ -1.23
UPF3B-203ENST00000478840 ID3Q02535 119 aa7.37□□□□□ -1.23
UPF3B-203ENST00000478840 EXOSC6Q5RKV6 272 aaKnown RBP7.37□□□□□ -1.23
UPF3B-203ENST00000478840 ZBTB37Q5TC79 503 aa7.37□□□□□ -1.23
UPF3B-203ENST00000478840 MRPL41Q8IXM3 137 aaKnown RBP7.37□□□□□ -1.23
UPF3B-203ENST00000478840 STK17AQ9UEE5 414 aa7.37□□□□□ -1.23
UPF3B-203ENST00000478840 MEGF11A6BM72 1044 aa7.36□□□□□ -1.23
UPF3B-203ENST00000478840 TMPRSS2O15393 492 aa7.36□□□□□ -1.23
UPF3B-203ENST00000478840 SUSD5O60279 629 aa7.36□□□□□ -1.23
UPF3B-203ENST00000478840 ZNF143P52747 638 aaPredicted RBP7.36□□□□□ -1.23
UPF3B-203ENST00000478840 ETF1P62495 437 aaKnown RBP7.36□□□□□ -1.23
UPF3B-203ENST00000478840 SLC7A5Q01650 507 aa7.36□□□□□ -1.23
UPF3B-203ENST00000478840 TCEA2Q15560 299 aa7.36□□□□□ -1.23
UPF3B-203ENST00000478840 SLC10A6Q3KNW5 377 aa7.36□□□□□ -1.23
UPF3B-203ENST00000478840 SLC6A19Q695T7 634 aa7.36□□□□□ -1.23
UPF3B-203ENST00000478840 DMRTC2Q8IXT2 367 aaPredicted RBP7.36□□□□□ -1.23
UPF3B-203ENST00000478840 ZSWIM2Q8NEG5 633 aa7.36□□□□□ -1.23
UPF3B-203ENST00000478840 SGSM3Q96HU1 749 aa7.36□□□□□ -1.23
UPF3B-203ENST00000478840 SPATA9Q9BWV2 254 aa7.36□□□□□ -1.23
UPF3B-203ENST00000478840 TMPRSS13Q9BYE2 586 aa7.36□□□□□ -1.23
UPF3B-203ENST00000478840 KCNK4Q9NYG8 393 aa7.36□□□□□ -1.23
UPF3B-203ENST00000478840 CRIM1Q9NZV1 1036 aa7.36□□□□□ -1.23
UPF3B-203ENST00000478840 TJP2Q9UDY2 1190 aa7.36□□□□□ -1.23
UPF3B-203ENST00000478840 PFDN2Q9UHV9 154 aa7.36□□□□□ -1.23
UPF3B-203ENST00000478840 IQCA1LA6NCM1 817 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 SHISA8B8ZZ34 492 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 RGS13O14921 159 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 DDX3YO15523 660 aaKnown RBP7.35□□□□□ -1.23
UPF3B-203ENST00000478840 ADCY3O60266 1144 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 BCRP11274 1271 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 RAG1P15918 1043 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 CAP2P40123 477 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 YARSP54577 528 aaKnown RBP7.35□□□□□ -1.23
UPF3B-203ENST00000478840 ANAPC15P60006 121 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 TKFCQ3LXA3 575 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 BBS9Q3SYG4 887 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 TMEM67Q5HYA8 995 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 PPM1JQ5JR12 505 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 KIAA1211LQ6NV74 962 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 ZBTB38Q8NAP3 1195 aaPredicted RBP7.35□□□□□ -1.23
UPF3B-203ENST00000478840 RNF214Q8ND24 703 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 TMEM87BQ96K49 555 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 DHRS1Q96LJ7 313 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 SLC26A8Q96RN1 970 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 KLHL3Q9UH77 587 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 PLAAQ9Y263 795 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 CSADQ9Y600 493 aa7.35□□□□□ -1.23
UPF3B-203ENST00000478840 CCDC163A0A0D9SF12 145 aa7.34□□□□□ -1.23
UPF3B-203ENST00000478840 DLL1O00548 723 aa7.34□□□□□ -1.23
UPF3B-203ENST00000478840 VIL1P09327 827 aaKnown RBP7.34□□□□□ -1.23
UPF3B-203ENST00000478840 MASP1P48740 699 aa7.34□□□□□ -1.23
UPF3B-203ENST00000478840 DGKGP49619 791 aa7.34□□□□□ -1.23
UPF3B-203ENST00000478840 PMS1P54277 932 aaKnown RBP7.34□□□□□ -1.23
UPF3B-203ENST00000478840 HID1Q8IV36 788 aa7.34□□□□□ -1.23
UPF3B-203ENST00000478840 LRRC47Q8N1G4 583 aaKnown RBP7.34□□□□□ -1.23
UPF3B-203ENST00000478840 ZNF507Q8TCN5 953 aa7.34□□□□□ -1.23
UPF3B-203ENST00000478840 WHAMMQ8TF30 809 aa7.34□□□□□ -1.23
UPF3B-203ENST00000478840 SUGCTQ9HAC7 445 aa7.34□□□□□ -1.23
UPF3B-203ENST00000478840 DISC1Q9NRI5 854 aa7.34□□□□□ -1.23
UPF3B-203ENST00000478840 PPP1R9AQ9ULJ8 1098 aa7.34□□□□□ -1.23
UPF3B-203ENST00000478840 PCDHB10Q9UN67 800 aa7.34□□□□□ -1.23
UPF3B-203ENST00000478840 RAB11FIP3O75154 756 aa7.33□□□□□ -1.24
UPF3B-203ENST00000478840 FAM153BP0C7A2 387 aa7.33□□□□□ -1.24
UPF3B-203ENST00000478840 HOXB4P17483 251 aaPredicted RBP7.33□□□□□ -1.24
UPF3B-203ENST00000478840 FBXO11Q86XK2 927 aa7.33□□□□□ -1.24
UPF3B-203ENST00000478840 KCT2Q8NC54 265 aa7.33□□□□□ -1.24
UPF3B-203ENST00000478840 FAM13CQ8NE31 585 aa7.33□□□□□ -1.24
UPF3B-203ENST00000478840 FANCD2OSQ96PS1 177 aa7.33□□□□□ -1.24
UPF3B-203ENST00000478840 GSX1Q9H4S2 264 aaPredicted RBP7.33□□□□□ -1.24
UPF3B-203ENST00000478840 RAD18Q9NS91 495 aa7.33□□□□□ -1.24
UPF3B-203ENST00000478840 ASMTLO95671 621 aa7.32□□□□□ -1.24
UPF3B-203ENST00000478840 POLR2BP30876 1174 aaKnown RBP7.32□□□□□ -1.24
UPF3B-203ENST00000478840 AMPD3Q01432 767 aa7.32□□□□□ -1.24
UPF3B-203ENST00000478840 GNPTABQ3T906 1256 aa7.32□□□□□ -1.24
UPF3B-203ENST00000478840 DALRD3Q5D0E6 543 aaKnown RBP7.32□□□□□ -1.24
UPF3B-203ENST00000478840 SMG8Q8ND04 991 aaKnown RBP7.32□□□□□ -1.24
UPF3B-203ENST00000478840 UBASH3BQ8TF42 649 aa7.32□□□□□ -1.24
UPF3B-203ENST00000478840 SMARCC1Q92922 1105 aaPredicted RBP7.32□□□□□ -1.24
UPF3B-203ENST00000478840 ATXN3LQ9H3M9 355 aa7.32□□□□□ -1.24
UPF3B-203ENST00000478840 SUCOQ9UBS9 1254 aaKnown RBP7.32□□□□□ -1.24
UPF3B-203ENST00000478840 RFPL3O75679 317 aa7.31□□□□□ -1.24
UPF3B-203ENST00000478840 UBOX5O94941 541 aa7.31□□□□□ -1.24
UPF3B-203ENST00000478840 NAT2P11245 290 aa7.31□□□□□ -1.24
UPF3B-203ENST00000478840 DUOXA2Q1HG44 320 aa7.31□□□□□ -1.24
UPF3B-203ENST00000478840 KRT26Q7Z3Y9 468 aa7.31□□□□□ -1.24
UPF3B-203ENST00000478840 TMEM192Q8IY95 271 aa7.31□□□□□ -1.24
UPF3B-203ENST00000478840 RPUSD2Q8IZ73 545 aaKnown RBP7.31□□□□□ -1.24
UPF3B-203ENST00000478840 FMR1NBQ8N0W7 255 aaPredicted RBP7.31□□□□□ -1.24
UPF3B-203ENST00000478840 CCDC74BQ96LY2 380 aa7.31□□□□□ -1.24
UPF3B-203ENST00000478840 FBRSQ9HAH7 460 aa7.31□□□□□ -1.24
UPF3B-203ENST00000478840 METTL14Q9HCE5 456 aaKnown RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms