RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 KCT2Q8NC54 265 aa7.06□□□□□ -1.28
CCDC88A-212ENST00000474059 CEP44Q9C0F1 390 aa7.06□□□□□ -1.28
CCDC88A-212ENST00000474059 WNT10AQ9GZT5 417 aa7.06□□□□□ -1.28
CCDC88A-212ENST00000474059 CD320Q9NPF0 282 aa7.06□□□□□ -1.28
CCDC88A-212ENST00000474059 WWC3Q9ULE0 1092 aa7.06□□□□□ -1.28
CCDC88A-212ENST00000474059 PRAMEF27A3QJZ7 478 aa7.05□□□□□ -1.28
CCDC88A-212ENST00000474059 ESR1P03372 595 aa7.05□□□□□ -1.28
CCDC88A-212ENST00000474059 TMEM67Q5HYA8 995 aa7.05□□□□□ -1.28
CCDC88A-212ENST00000474059 SFRP5Q5T4F7 317 aa7.05□□□□□ -1.28
CCDC88A-212ENST00000474059 TTLL10Q6ZVT0 673 aa7.05□□□□□ -1.28
CCDC88A-212ENST00000474059 SIAH1Q8IUQ4 282 aa7.05□□□□□ -1.28
CCDC88A-212ENST00000474059 ELMO3Q96BJ8 720 aa7.05□□□□□ -1.28
CCDC88A-212ENST00000474059 DIRC2Q96SL1 478 aa7.05□□□□□ -1.28
CCDC88A-212ENST00000474059 SP110Q9HB58 689 aa7.05□□□□□ -1.28
CCDC88A-212ENST00000474059 PICK1Q9NRD5 415 aa7.05□□□□□ -1.28
CCDC88A-212ENST00000474059 CYP8B1Q9UNU6 501 aa7.05□□□□□ -1.28
CCDC88A-212ENST00000474059 GNEQ9Y223 722 aaKnown RBP7.05□□□□□ -1.28
CCDC88A-212ENST00000474059 WASH4PA8MWX3 477 aa7.04□□□□□ -1.28
CCDC88A-212ENST00000474059 ZSCAN22P10073 491 aaPredicted RBP7.04□□□□□ -1.28
CCDC88A-212ENST00000474059 ERVFC1P60507 584 aa7.04□□□□□ -1.28
CCDC88A-212ENST00000474059 LRRC14Q15048 493 aa7.04□□□□□ -1.28
CCDC88A-212ENST00000474059 MPZL3Q6UWV2 235 aa7.04□□□□□ -1.28
CCDC88A-212ENST00000474059 FBF1Q8TES7 1133 aa7.04□□□□□ -1.28
CCDC88A-212ENST00000474059 ALPK1Q96QP1 1244 aa7.04□□□□□ -1.28
CCDC88A-212ENST00000474059 SRCIN1Q9C0H9 1055 aa7.04□□□□□ -1.28
CCDC88A-212ENST00000474059 NSUN3Q9H649 340 aaKnown RBP7.04□□□□□ -1.28
CCDC88A-212ENST00000474059 DNAJC25-GNG10A0A024R161 153 aa7.03□□□□□ -1.28
CCDC88A-212ENST00000474059 FAM155AB1AL88 458 aaPredicted RBP7.03□□□□□ -1.28
CCDC88A-212ENST00000474059 TNK2Q07912 1038 aa7.03□□□□□ -1.28
CCDC88A-212ENST00000474059 RALGPS1Q5JS13 557 aa7.03□□□□□ -1.28
CCDC88A-212ENST00000474059 PRAMEF13Q5VWM6 474 aa7.03□□□□□ -1.28
CCDC88A-212ENST00000474059 LETMD1Q6P1Q0 360 aa7.03□□□□□ -1.28
CCDC88A-212ENST00000474059 LILRA6Q6PI73 481 aa7.03□□□□□ -1.28
CCDC88A-212ENST00000474059 THAP5Q7Z6K1 395 aa7.03□□□□□ -1.28
CCDC88A-212ENST00000474059 ANKLE2Q86XL3 938 aa7.03□□□□□ -1.28
CCDC88A-212ENST00000474059 FBXO15Q8NCQ5 510 aaPredicted RBP7.03□□□□□ -1.28
CCDC88A-212ENST00000474059 TPX2Q9ULW0 747 aaKnown RBP7.03□□□□□ -1.28
CCDC88A-212ENST00000474059 SAMM50Q9Y512 469 aa7.03□□□□□ -1.28
CCDC88A-212ENST00000474059 NCANO14594 1321 aa7.02□□□□□ -1.28
CCDC88A-212ENST00000474059 CST3P01034 146 aaPredicted RBP7.02□□□□□ -1.29
CCDC88A-212ENST00000474059 MED14OSP0DP75 135 aa7.02□□□□□ -1.29
CCDC88A-212ENST00000474059 WIPI1Q5MNZ9 446 aaPredicted RBP7.02□□□□□ -1.29
CCDC88A-212ENST00000474059 AMIGO3Q86WK7 504 aa7.02□□□□□ -1.29
CCDC88A-212ENST00000474059 ZSCAN18Q8TBC5 510 aaPredicted RBP7.02□□□□□ -1.29
CCDC88A-212ENST00000474059 NPIPB6E9PJ23 425 aa7.01□□□□□ -1.29
CCDC88A-212ENST00000474059 GFRA2O00451 464 aa7.01□□□□□ -1.29
CCDC88A-212ENST00000474059 MAPK1P28482 360 aa7.01□□□□□ -1.29
CCDC88A-212ENST00000474059 MFSD2AQ8NA29 543 aa7.01□□□□□ -1.29
CCDC88A-212ENST00000474059 UBE2FQ969M7 185 aa7.01□□□□□ -1.29
CCDC88A-212ENST00000474059 SLAMF8Q9P0V8 285 aa7.01□□□□□ -1.29
CCDC88A-212ENST00000474059 BIN2Q9UBW5 565 aaPredicted RBP7.01□□□□□ -1.29
CCDC88A-212ENST00000474059 CBX7O95931 251 aa7□□□□□ -1.29
CCDC88A-212ENST00000474059 USP17L7P0C7H9 530 aa7□□□□□ -1.29
CCDC88A-212ENST00000474059 HID1Q8IV36 788 aa7□□□□□ -1.29
CCDC88A-212ENST00000474059 XAGE3Q8WTP9 111 aa7□□□□□ -1.29
CCDC88A-212ENST00000474059 Q96M66 194 aa7□□□□□ -1.29
CCDC88A-212ENST00000474059 C12orf49Q9H741 205 aa7□□□□□ -1.29
CCDC88A-212ENST00000474059 ZSWIM5Q9P217 1185 aa7□□□□□ -1.29
CCDC88A-212ENST00000474059 PRRG2O14669 202 aa6.99□□□□□ -1.29
CCDC88A-212ENST00000474059 HPXP02790 462 aa6.99□□□□□ -1.29
CCDC88A-212ENST00000474059 GRK4P32298 578 aa6.99□□□□□ -1.29
CCDC88A-212ENST00000474059 MAPK8P45983 427 aa6.99□□□□□ -1.29
CCDC88A-212ENST00000474059 HDXQ7Z353 690 aa6.99□□□□□ -1.29
CCDC88A-212ENST00000474059 TTC6Q86TZ1 520 aa6.99□□□□□ -1.29
CCDC88A-212ENST00000474059 TJP2Q9UDY2 1190 aa6.99□□□□□ -1.29
CCDC88A-212ENST00000474059 PCDHB5Q9Y5E4 795 aa6.99□□□□□ -1.29
CCDC88A-212ENST00000474059 SNCAIPQ9Y6H5 919 aa6.99□□□□□ -1.29
CCDC88A-212ENST00000474059 ETV2O00321 342 aaPredicted RBP6.98□□□□□ -1.29
CCDC88A-212ENST00000474059 NFIBO00712 420 aa6.98□□□□□ -1.29
CCDC88A-212ENST00000474059 TRHRP34981 398 aaPredicted RBP6.98□□□□□ -1.29
CCDC88A-212ENST00000474059 KCNA10Q16322 511 aa6.98□□□□□ -1.29
CCDC88A-212ENST00000474059 GAB4Q2WGN9 574 aa6.98□□□□□ -1.29
CCDC88A-212ENST00000474059 ATG14Q6ZNE5 492 aa6.98□□□□□ -1.29
CCDC88A-212ENST00000474059 DNAJB8Q8NHS0 232 aa6.98□□□□□ -1.29
CCDC88A-212ENST00000474059 ABHD4Q8TB40 342 aa6.98□□□□□ -1.29
CCDC88A-212ENST00000474059 EPB41L4BQ9H329 900 aa6.98□□□□□ -1.29
CCDC88A-212ENST00000474059 RAPGEFL1Q9UHV5 662 aa6.98□□□□□ -1.29
CCDC88A-212ENST00000474059 GIPC1O14908 333 aa6.97□□□□□ -1.29
CCDC88A-212ENST00000474059 GLDCP23378 1020 aa6.97□□□□□ -1.29
CCDC88A-212ENST00000474059 BUD31P41223 144 aaPredicted RBP6.97□□□□□ -1.29
CCDC88A-212ENST00000474059 ETF1P62495 437 aaKnown RBP6.97□□□□□ -1.29
CCDC88A-212ENST00000474059 CDH24Q86UP0 819 aa6.97□□□□□ -1.29
CCDC88A-212ENST00000474059 DPH2Q9BQC3 489 aaPredicted RBP6.97□□□□□ -1.29
CCDC88A-212ENST00000474059 DUSP15Q9H1R2 295 aaPredicted RBP6.97□□□□□ -1.29
CCDC88A-212ENST00000474059 ADAMTS10Q9H324 1103 aa6.97□□□□□ -1.29
CCDC88A-212ENST00000474059 TMEM59LQ9UK28 342 aa6.97□□□□□ -1.29
CCDC88A-212ENST00000474059 INHBBP09529 407 aa6.96□□□□□ -1.3
CCDC88A-212ENST00000474059 SEPT6Q14141 434 aa6.96□□□□□ -1.3
CCDC88A-212ENST00000474059 ALG1LQ6GMV1 187 aa6.96□□□□□ -1.3
CCDC88A-212ENST00000474059 TTBK2Q6IQ55 1244 aa6.96□□□□□ -1.3
CCDC88A-212ENST00000474059 SV2BQ7L1I2 683 aa6.96□□□□□ -1.3
CCDC88A-212ENST00000474059 MRPL41Q8IXM3 137 aaKnown RBP6.96□□□□□ -1.3
CCDC88A-212ENST00000474059 C20orf173Q96LM9 149 aa6.96□□□□□ -1.3
CCDC88A-212ENST00000474059 DCP1AQ9NPI6 582 aaPredicted RBP6.96□□□□□ -1.3
CCDC88A-212ENST00000474059 FAM8A1Q9UBU6 413 aa6.96□□□□□ -1.3
CCDC88A-212ENST00000474059 SMG5Q9UPR3 1016 aaKnown RBP6.96□□□□□ -1.3
CCDC88A-212ENST00000474059 KIR3DL1P43629 444 aa6.95□□□□□ -1.3
CCDC88A-212ENST00000474059 HK2P52789 917 aa6.95□□□□□ -1.3
CCDC88A-212ENST00000474059 TIGD5Q53EQ6 642 aa6.95□□□□□ -1.3
CCDC88A-212ENST00000474059 PPP1R13LQ8WUF5 828 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms