RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 OTUD7AQ8TE49 926 aaPredicted RBP21.67■■□□□ 1.06
UPF3A-203ENST00000474056 DCP1AQ9NPI6 582 aaPredicted RBP21.67■■□□□ 1.06
UPF3A-203ENST00000474056 ZBTB21Q9ULJ3 1066 aa21.67■■□□□ 1.06
UPF3A-203ENST00000474056 AGTPBP1Q9UPW5 1226 aa21.67■■□□□ 1.06
UPF3A-203ENST00000474056 SLC45A1Q9Y2W3 748 aa21.67■■□□□ 1.06
UPF3A-203ENST00000474056 PRKAB2O43741 272 aa21.66■■□□□ 1.06
UPF3A-203ENST00000474056 POLR3DP05423 398 aaPredicted RBP21.66■■□□□ 1.06
UPF3A-203ENST00000474056 BCRP11274 1271 aa21.66■■□□□ 1.06
UPF3A-203ENST00000474056 CTGFP29279 349 aa21.66■■□□□ 1.06
UPF3A-203ENST00000474056 KIF22Q14807 665 aa21.66■■□□□ 1.06
UPF3A-203ENST00000474056 TATDN1Q6P1N9 297 aa21.66■■□□□ 1.06
UPF3A-203ENST00000474056 MCM9Q9NXL9 1143 aa21.66■■□□□ 1.06
UPF3A-203ENST00000474056 CENPFP49454 3210 aa21.66■■□□□ 1.06
UPF3A-203ENST00000474056 KIAA0100Q14667 2235 aaKnown RBP21.65■■□□□ 1.06
UPF3A-203ENST00000474056 MTMR2Q13614 643 aa21.65■■□□□ 1.06
UPF3A-203ENST00000474056 ARHGEF6Q15052 776 aa21.65■■□□□ 1.06
UPF3A-203ENST00000474056 SH3D19Q5HYK7 790 aa21.65■■□□□ 1.06
UPF3A-203ENST00000474056 WDR18Q9BV38 432 aa21.65■■□□□ 1.06
UPF3A-203ENST00000474056 GINM1Q9NU53 330 aa21.65■■□□□ 1.06
UPF3A-203ENST00000474056 RBBP6Q7Z6E9 1792 aaKnown RBP21.65■■□□□ 1.06
UPF3A-203ENST00000474056 TTC41PQ6P2S7 1318 aa21.64■■□□□ 1.05
UPF3A-203ENST00000474056 GH2P01242 217 aa21.64■■□□□ 1.05
UPF3A-203ENST00000474056 SHMT1P34896 483 aa21.64■■□□□ 1.05
UPF3A-203ENST00000474056 GABPAQ06546 454 aa21.64■■□□□ 1.05
UPF3A-203ENST00000474056 ZSCAN25Q6NSZ9 544 aa21.64■■□□□ 1.05
UPF3A-203ENST00000474056 KBTBD3Q8NAB2 608 aa21.64■■□□□ 1.05
UPF3A-203ENST00000474056 PUS7LQ9H0K6 701 aaKnown RBP21.64■■□□□ 1.05
UPF3A-203ENST00000474056 PTCH2Q9Y6C5 1203 aa21.64■■□□□ 1.05
UPF3A-203ENST00000474056 CYP2D6P10635 497 aa21.63■■□□□ 1.05
UPF3A-203ENST00000474056 PSMC4P43686 418 aa21.63■■□□□ 1.05
UPF3A-203ENST00000474056 BACE1P56817 501 aa21.63■■□□□ 1.05
UPF3A-203ENST00000474056 HDAC1Q13547 482 aaPredicted RBP21.63■■□□□ 1.05
UPF3A-203ENST00000474056 PI4K2BQ8TCG2 481 aa21.63■■□□□ 1.05
UPF3A-203ENST00000474056 CERKLQ49MI3 558 aaPredicted RBP21.62■■□□□ 1.05
UPF3A-203ENST00000474056 SMCR8Q8TEV9 937 aaPredicted RBP21.62■■□□□ 1.05
UPF3A-203ENST00000474056 TRIM47Q96LD4 638 aa21.62■■□□□ 1.05
UPF3A-203ENST00000474056 ATP8A2Q9NTI2 1148 aa21.62■■□□□ 1.05
UPF3A-203ENST00000474056 PNMA3Q9UL41 463 aa21.62■■□□□ 1.05
UPF3A-203ENST00000474056 SALL3Q9BXA9 1300 aa21.61■■□□□ 1.05
UPF3A-203ENST00000474056 USP17L10C9JJH3 530 aa21.61■■□□□ 1.05
UPF3A-203ENST00000474056 ANKRD45Q5TZF3 282 aa21.61■■□□□ 1.05
UPF3A-203ENST00000474056 ERC2O15083 957 aa21.6■■□□□ 1.05
UPF3A-203ENST00000474056 GNRH1P01148 92 aa21.6■■□□□ 1.05
UPF3A-203ENST00000474056 MX1P20591 662 aa21.6■■□□□ 1.05
UPF3A-203ENST00000474056 MLLT1Q03111 559 aaPredicted RBP21.6■■□□□ 1.05
UPF3A-203ENST00000474056 ABCB5Q2M3G0 1257 aa21.6■■□□□ 1.05
UPF3A-203ENST00000474056 EXOC6Q8TAG9 804 aa21.6■■□□□ 1.05
UPF3A-203ENST00000474056 GCC1Q96CN9 775 aa21.6■■□□□ 1.05
UPF3A-203ENST00000474056 TMOD4Q9NZQ9 345 aa21.6■■□□□ 1.05
UPF3A-203ENST00000474056 SLC4A4Q9Y6R1 1079 aa21.6■■□□□ 1.05
UPF3A-203ENST00000474056 C19orf81C9J6K1 198 aa21.59■■□□□ 1.05
UPF3A-203ENST00000474056 SMIM22K7EJ46 135 aa21.59■■□□□ 1.05
UPF3A-203ENST00000474056 GLRX3O76003 335 aaKnown RBP21.59■■□□□ 1.05
UPF3A-203ENST00000474056 FMNL1O95466 1100 aaPredicted RBP21.59■■□□□ 1.05
UPF3A-203ENST00000474056 OSBPP22059 807 aa21.59■■□□□ 1.05
UPF3A-203ENST00000474056 PABPC4Q13310 644 aaKnown RBP eCLIP21.59■■□□□ 1.05
UPF3A-203ENST00000474056 RAB3GAP1Q15042 981 aa21.59■■□□□ 1.05
UPF3A-203ENST00000474056 ANKRD13CQ8N6S4 541 aa21.59■■□□□ 1.05
UPF3A-203ENST00000474056 SLC44A5Q8NCS7 719 aa21.59■■□□□ 1.05
UPF3A-203ENST00000474056 OSBP2Q969R2 916 aa21.59■■□□□ 1.05
UPF3A-203ENST00000474056 ARMC5Q96C12 935 aa21.59■■□□□ 1.05
UPF3A-203ENST00000474056 DYNLL2Q96FJ2 89 aa21.59■■□□□ 1.05
UPF3A-203ENST00000474056 ASCC2Q9H1I8 757 aaPredicted RBP21.59■■□□□ 1.05
UPF3A-203ENST00000474056 CYP2D7A0A087X1C5 515 aa21.58■■□□□ 1.05
UPF3A-203ENST00000474056 RNF113AO15541 343 aaKnown RBP21.58■■□□□ 1.05
UPF3A-203ENST00000474056 GUCY1A2P33402 732 aa21.58■■□□□ 1.05
UPF3A-203ENST00000474056 AAMPQ13685 434 aa21.58■■□□□ 1.05
UPF3A-203ENST00000474056 APPBP2Q92624 585 aa21.58■■□□□ 1.05
UPF3A-203ENST00000474056 CABP5Q9NP86 173 aa21.58■■□□□ 1.05
UPF3A-203ENST00000474056 ZBTB47Q9UFB7 747 aaPredicted RBP21.58■■□□□ 1.05
UPF3A-203ENST00000474056 SRRDQ9UH36 339 aa21.58■■□□□ 1.05
UPF3A-203ENST00000474056 BRCA2P51587 3418 aa21.57■■□□□ 1.04
UPF3A-203ENST00000474056 ZYXQ15942 572 aaKnown RBP21.57■■□□□ 1.04
UPF3A-203ENST00000474056 SLC9C1Q4G0N8 1177 aa21.57■■□□□ 1.04
UPF3A-203ENST00000474056 C12orf60Q5U649 245 aa21.57■■□□□ 1.04
UPF3A-203ENST00000474056 STRBPQ96SI9 672 aaKnown RBP21.57■■□□□ 1.04
UPF3A-203ENST00000474056 EMILIN3Q9NT22 766 aa21.57■■□□□ 1.04
UPF3A-203ENST00000474056 SUPT16HQ9Y5B9 1047 aaKnown RBP21.57■■□□□ 1.04
UPF3A-203ENST00000474056 MYPNQ86TC9 1320 aa21.56■■□□□ 1.04
UPF3A-203ENST00000474056 USP17L12C9JPN9 530 aa21.56■■□□□ 1.04
UPF3A-203ENST00000474056 USP17L21D6R901 530 aa21.56■■□□□ 1.04
UPF3A-203ENST00000474056 ZFYP08048 801 aaPredicted RBP21.56■■□□□ 1.04
UPF3A-203ENST00000474056 HOXA7P31268 230 aaPredicted RBP21.56■■□□□ 1.04
UPF3A-203ENST00000474056 PRMT2P55345 433 aa21.56■■□□□ 1.04
UPF3A-203ENST00000474056 FCGRTP55899 365 aa21.56■■□□□ 1.04
UPF3A-203ENST00000474056 SEPT2Q15019 361 aa21.56■■□□□ 1.04
UPF3A-203ENST00000474056 FAM110CQ1W6H9 321 aa21.56■■□□□ 1.04
UPF3A-203ENST00000474056 USP17L2Q6R6M4 530 aa21.56■■□□□ 1.04
UPF3A-203ENST00000474056 ACER1Q8TDN7 264 aa21.56■■□□□ 1.04
UPF3A-203ENST00000474056 ZNF333Q96JL9 665 aa21.56■■□□□ 1.04
UPF3A-203ENST00000474056 FEZ1Q99689 392 aa21.56■■□□□ 1.04
UPF3A-203ENST00000474056 SWAP70Q9UH65 585 aa21.56■■□□□ 1.04
UPF3A-203ENST00000474056 M0R2C6 588 aa21.55■■□□□ 1.04
UPF3A-203ENST00000474056 GPAA1O43292 621 aa21.55■■□□□ 1.04
UPF3A-203ENST00000474056 HOXD10P28358 340 aa21.55■■□□□ 1.04
UPF3A-203ENST00000474056 IRX3P78415 501 aaPredicted RBP21.55■■□□□ 1.04
UPF3A-203ENST00000474056 CTR9Q6PD62 1173 aa21.55■■□□□ 1.04
UPF3A-203ENST00000474056 SH3TC2Q8TF17 1288 aa21.55■■□□□ 1.04
UPF3A-203ENST00000474056 DDRGK1Q96HY6 314 aa21.55■■□□□ 1.04
UPF3A-203ENST00000474056 FSD1Q9BTV5 496 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms